메뉴 건너뛰기




Volumn 33, Issue 24, 2014, Pages 2947-2966

TDP-1, the Caenorhabditis elegans ortholog of TDP-43, limits the accumulation of double-stranded RNA

Author keywords

neurodegeneration; RNA editing; RNA structure; splicing

Indexed keywords

2 BUTANONE; ADENOSINE; DOUBLE STRANDED RNA; INOSINE; ISOPENTYL ALCOHOL; RNA BINDING PROTEIN; TAR DNA BINDING PROTEIN; TDP 1 PROTEIN; UNCLASSIFIED DRUG; CAENORHABDITIS ELEGANS PROTEIN; DNA BINDING PROTEIN; PROTEIN TDP-43; TDP-1 PROTEIN, C ELEGANS;

EID: 84918825214     PISSN: 02614189     EISSN: 14602075     Source Type: Journal    
DOI: 10.15252/embj.201488740     Document Type: Article
Times cited : (57)

References (64)
  • 3
    • 38449121385 scopus 로고    scopus 로고
    • C. elegans (October 25, 2006), WormBook, ed The C. elegans Research Community, WormBook
    • Bargmann CI, (2006) Chemosensation in C. elegans (October 25, 2006), WormBook, ed. The C. elegans Research Community, WormBook. doi: 10.1895/wormbook.1.123.1, http://www.wormbook.org
    • (2006) Chemosensation
    • Bargmann, C.I.1
  • 4
    • 0024233053 scopus 로고    scopus 로고
    • An unwinding activity that covalently modifies its double-stranded RNA substrate
    • Bass BLWH, (1998) An unwinding activity that covalently modifies its double-stranded RNA substrate. Cell 55: 1089-1098
    • (1998) Cell , vol.55 , pp. 1089-1098
    • Bass, B.1
  • 5
    • 84934439769 scopus 로고    scopus 로고
    • Chromatin immunoprecipitation approaches to determine co-transcriptional nature of splicing
    • Bieberstein NI, Straube K, Neugebauer KM, (2014) Chromatin immunoprecipitation approaches to determine co-transcriptional nature of splicing. Methods Mol Biol 1126: 315-323
    • (2014) Methods Mol Biol , vol.1126 , pp. 315-323
    • Bieberstein, N.I.1    Straube, K.2    Neugebauer, K.M.3
  • 6
    • 0016063911 scopus 로고
    • The genetics of Caenorhabditis elegans
    • Brenner S, (1974) The genetics of Caenorhabditis elegans. Genetics 77: 71-94
    • (1974) Genetics , vol.77 , pp. 71-94
    • Brenner, S.1
  • 7
    • 0035965309 scopus 로고    scopus 로고
    • Characterization and functional implications of the RNA binding properties of nuclear factor TDP-43, a novel splicing regulator of CFTR exon 9
    • Buratti E, Baralle FE, (2001) Characterization and functional implications of the RNA binding properties of nuclear factor TDP-43, a novel splicing regulator of CFTR exon 9. J Biol Chem 276: 36337-36343
    • (2001) J Biol Chem , vol.276 , pp. 36337-36343
    • Buratti, E.1    Baralle, F.E.2
  • 9
    • 84155171976 scopus 로고    scopus 로고
    • Understanding the role of TDP-43 and FUS/TLS in ALS and beyond
    • Da Cruz S, Cleveland DW, (2011) Understanding the role of TDP-43 and FUS/TLS in ALS and beyond. Curr Opin Neurobiol 21: 904-919
    • (2011) Curr Opin Neurobiol , vol.21 , pp. 904-919
    • Da Cruz, S.1    Cleveland, D.W.2
  • 10
    • 0038054468 scopus 로고    scopus 로고
    • RNAse III-mediated degradation of unspliced pre-mRNAs and lariat introns
    • Danin-Kreiselman M, Lee CY, Chanfreau G, (2003) RNAse III-mediated degradation of unspliced pre-mRNAs and lariat introns. Mol Cell 11: 1279-1289
    • (2003) Mol Cell , vol.11 , pp. 1279-1289
    • Danin-Kreiselman, M.1    Lee, C.Y.2    Chanfreau, G.3
  • 12
    • 79551480422 scopus 로고    scopus 로고
    • Identification of active loci of a human endogenous retrovirus in neurons of patients with amyotrophic lateral sclerosis
    • Douville R, Liu J, Rothstein J, Nath A, (2011) Identification of active loci of a human endogenous retrovirus in neurons of patients with amyotrophic lateral sclerosis. Ann Neurol 69: 141-151
    • (2011) Ann Neurol , vol.69 , pp. 141-151
    • Douville, R.1    Liu, J.2    Rothstein, J.3    Nath, A.4
  • 13
    • 67349271683 scopus 로고    scopus 로고
    • Depletion of TDP-43 affects Drosophila motoneurons terminal synapsis and locomotive behavior
    • Feiguin F, Godena VK, Romano G, D'Ambrogio A, Klima R, Baralle FE, (2009) Depletion of TDP-43 affects Drosophila motoneurons terminal synapsis and locomotive behavior. FEBS Lett 583: 1586-1592
    • (2009) FEBS Lett , vol.583 , pp. 1586-1592
    • Feiguin, F.1    Godena, V.K.2    Romano, G.3    D'Ambrogio, A.4    Klima, R.5    Baralle, F.E.6
  • 14
    • 77954385645 scopus 로고    scopus 로고
    • Small RNA-mediated gene silencing pathways in C. Elegans
    • Fischer SE, (2010) Small RNA-mediated gene silencing pathways in C. elegans. Int J Biochem Cell Biol 42: 1306-1315
    • (2010) Int J Biochem Cell Biol , vol.42 , pp. 1306-1315
    • Fischer, S.E.1
  • 16
    • 76149120427 scopus 로고    scopus 로고
    • Global analysis of TDP-43 interacting proteins reveals strong association with RNA splicing and translation machinery
    • Freibaum BD, Chitta RK, High AA, Taylor JP, (2010) Global analysis of TDP-43 interacting proteins reveals strong association with RNA splicing and translation machinery. J Proteome Res 9: 1104-1120
    • (2010) J Proteome Res , vol.9 , pp. 1104-1120
    • Freibaum, B.D.1    Chitta, R.K.2    High, A.A.3    Taylor, J.P.4
  • 17
    • 77955283303 scopus 로고    scopus 로고
    • RNA polymerase II C-terminal domain phosphorylation patterns in Caenorhabditis elegans operons, polycistronic gene clusters with only one promoter
    • Garrido-Lecca A, Blumenthal T, (2010) RNA polymerase II C-terminal domain phosphorylation patterns in Caenorhabditis elegans operons, polycistronic gene clusters with only one promoter. Mol Cell Biol 30: 3887-3893
    • (2010) Mol Cell Biol , vol.30 , pp. 3887-3893
    • Garrido-Lecca, A.1    Blumenthal, T.2
  • 19
    • 66449106867 scopus 로고    scopus 로고
    • Gene regulation by sense-antisense overlap of polyadenylation signals
    • Gu R, Zhang Z, DeCerbo JN, Carmichael GG, (2009) Gene regulation by sense-antisense overlap of polyadenylation signals. RNA 15: 1154-1163
    • (2009) RNA , vol.15 , pp. 1154-1163
    • Gu, R.1    Zhang, Z.2    Decerbo, J.N.3    Carmichael, G.G.4
  • 20
    • 79952592361 scopus 로고    scopus 로고
    • Autoregulation of convergent RNAi genes in fission yeast
    • Gullerova M, Moazed D, Proudfoot NJ, (2011) Autoregulation of convergent RNAi genes in fission yeast. Genes Dev 25: 556-568
    • (2011) Genes Dev , vol.25 , pp. 556-568
    • Gullerova, M.1    Moazed, D.2    Proudfoot, N.J.3
  • 21
    • 84863431578 scopus 로고    scopus 로고
    • ALS-associated ataxin 2 polyQ expansions enhance stress-induced caspase 3 activation and increase TDP-43 pathological modifications
    • Hart MP, Gitler AD, (2012) ALS-associated ataxin 2 polyQ expansions enhance stress-induced caspase 3 activation and increase TDP-43 pathological modifications. J Neurosci 32: 9133-9142
    • (2012) J Neurosci , vol.32 , pp. 9133-9142
    • Hart, M.P.1    Gitler, A.D.2
  • 22
    • 84883348833 scopus 로고    scopus 로고
    • Comparison of parallel high-throughput RNA sequencing between knockout of TDP-43 and its overexpression reveals primarily nonreciprocal and nonoverlapping gene expression changes in the central nervous system of drosophila
    • Hazelett DJ, Chang CJ, Lakeland DL, Morton DB, (2012) Comparison of parallel high-throughput RNA sequencing between knockout of TDP-43 and its overexpression reveals primarily nonreciprocal and nonoverlapping gene expression changes in the central nervous system of drosophila. G3 (Bethesda) 2: 789-802
    • (2012) G3 (Bethesda) , vol.2 , pp. 789-802
    • Hazelett, D.J.1    Chang, C.J.2    Lakeland, D.L.3    Morton, D.B.4
  • 23
    • 84865190331 scopus 로고    scopus 로고
    • Co-occurrence of TDP-43 mislocalization with reduced activity of an RNA editing enzyme, ADAR2, in aged mouse motor neurons
    • Hideyama T, Teramoto S, Hachiga K, Yamashita T, Kwak S, (2012) Co-occurrence of TDP-43 mislocalization with reduced activity of an RNA editing enzyme, ADAR2, in aged mouse motor neurons. PLoS One 7: e43469
    • (2012) PLoS One , vol.7 , pp. e43469
    • Hideyama, T.1    Teramoto, S.2    Hachiga, K.3    Yamashita, T.4    Kwak, S.5
  • 24
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang da W, Sherman BT, Lempicki RA, (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44-57
    • (2009) Nat Protoc , vol.4 , pp. 44-57
    • Huang Da, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 28
    • 80355128130 scopus 로고    scopus 로고
    • C. Elegans positive butanone learning, short-term, and long-term associative memory assays
    • Kauffman A, Parsons L, Stein G, Wills A, Kaletsky R, Murphy C, (2011) C. elegans positive butanone learning, short-term, and long-term associative memory assays. J Vis Exp e2490, doi: 10.3791/2490
    • (2011) J Vis Exp , pp. e2490
    • Kauffman, A.1    Parsons, L.2    Stein, G.3    Wills, A.4    Kaletsky, R.5    Murphy, C.6
  • 29
    • 0036810232 scopus 로고    scopus 로고
    • The role of RNA editing by ADARs in RNAi
    • Knight SW, Bass BL, (2002) The role of RNA editing by ADARs in RNAi. Mol Cell 10: 809-817
    • (2002) Mol Cell , vol.10 , pp. 809-817
    • Knight, S.W.1    Bass, B.L.2
  • 31
    • 33645765165 scopus 로고    scopus 로고
    • RNA editing and alternative splicing: The importance of co-transcriptional coordination
    • Laurencikiene J, Kallman AM, Fong N, Bentley DL, Ohman M, (2006) RNA editing and alternative splicing: the importance of co-transcriptional coordination. EMBO Rep 7: 303-307
    • (2006) EMBO Rep , vol.7 , pp. 303-307
    • Laurencikiene, J.1    Kallman, A.M.2    Fong, N.3    Bentley, D.L.4    Ohman, M.5
  • 32
    • 84867614408 scopus 로고    scopus 로고
    • A central role for RNA in the induction and biological activities of type 1 interferons
    • Li XL, Ezelle HJ, Hsi TY, Hassel BA, (2011) A central role for RNA in the induction and biological activities of type 1 interferons. Wiley Interdiscip Rev RNA 2: 58-78
    • (2011) Wiley Interdiscip Rev RNA , vol.2 , pp. 58-78
    • Li, X.L.1    Ezelle, H.J.2    Hsi, T.Y.3    Hassel, B.A.4
  • 33
    • 84866050961 scopus 로고    scopus 로고
    • Transposable elements in TDP-43-mediated neurodegenerative disorders
    • Li W, Jin Y, Prazak L, Hammell M, Dubnau J, (2012) Transposable elements in TDP-43-mediated neurodegenerative disorders. PLoS One 7: e44099
    • (2012) PLoS One , vol.7 , pp. e44099
    • Li, W.1    Jin, Y.2    Prazak, L.3    Hammell, M.4    Dubnau, J.5
  • 34
    • 0037062438 scopus 로고    scopus 로고
    • RNA hairpins in noncoding regions of human brain and Caenorhabditis elegans mRNA are edited by adenosine deaminases that act on RNA
    • Morse DP, Aruscavage PJ, Bass BL, (2002) RNA hairpins in noncoding regions of human brain and Caenorhabditis elegans mRNA are edited by adenosine deaminases that act on RNA. Proc Natl Acad Sci USA 99: 7906-7911
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 7906-7911
    • Morse, D.P.1    Aruscavage, P.J.2    Bass, B.L.3
  • 35
    • 84857314596 scopus 로고    scopus 로고
    • RNA chaperone activity of human la protein is mediated by variant RNA recognition motif
    • Naeeni AR, Conte MR, Bayfield MA, (2012) RNA chaperone activity of human La protein is mediated by variant RNA recognition motif. J Biol Chem 287: 5472-5482
    • (2012) J Biol Chem , vol.287 , pp. 5472-5482
    • Naeeni, A.R.1    Conte, M.R.2    Bayfield, M.A.3
  • 36
    • 84867575580 scopus 로고    scopus 로고
    • Alternative 3′-end processing of long noncoding RNA initiates construction of nuclear paraspeckles
    • Naganuma T, Nakagawa S, Tanigawa A, Sasaki YF, Goshima N, Hirose T, (2012) Alternative 3′-end processing of long noncoding RNA initiates construction of nuclear paraspeckles. EMBO J 31: 4020-4034
    • (2012) EMBO J , vol.31 , pp. 4020-4034
    • Naganuma, T.1    Nakagawa, S.2    Tanigawa, A.3    Sasaki, Y.F.4    Goshima, N.5    Hirose, T.6
  • 37
    • 77952293063 scopus 로고    scopus 로고
    • Functions and regulation of RNA editing by ADAR deaminases
    • Nishikura K, (2010) Functions and regulation of RNA editing by ADAR deaminases. Annu Rev Biochem 79: 321-349
    • (2010) Annu Rev Biochem , vol.79 , pp. 321-349
    • Nishikura, K.1
  • 38
    • 0029066110 scopus 로고
    • Cloning and characterization of a novel cellular protein, TDP-43, that binds to human immunodeficiency virus type 1 TAR DNA sequence motifs
    • Ou SH, Wu F, Harrich D, Garcia-Martinez LF, Gaynor RB, (1995) Cloning and characterization of a novel cellular protein, TDP-43, that binds to human immunodeficiency virus type 1 TAR DNA sequence motifs. J Virol 69: 3584-3596
    • (1995) J Virol , vol.69 , pp. 3584-3596
    • Ou, S.H.1    Wu, F.2    Harrich, D.3    Garcia-Martinez, L.F.4    Gaynor, R.B.5
  • 39
    • 77649252528 scopus 로고    scopus 로고
    • Mutations in TDP-43 link glycine-rich domain functions to amyotrophic lateral sclerosis
    • Pesiridis GS, Lee VM, Trojanowski JQ, (2009) Mutations in TDP-43 link glycine-rich domain functions to amyotrophic lateral sclerosis. Hum Mol Genet 18: R156-R162
    • (2009) Hum Mol Genet , vol.18 , pp. R156-R162
    • Pesiridis, G.S.1    Lee, V.M.2    Trojanowski, J.Q.3
  • 42
    • 36249019206 scopus 로고    scopus 로고
    • Dissecting RNA chaperone activity
    • Rajkowitsch L, Schroeder R, (2007) Dissecting RNA chaperone activity. RNA 13: 2053-2060
    • (2007) RNA , vol.13 , pp. 2053-2060
    • Rajkowitsch, L.1    Schroeder, R.2
  • 43
    • 75249087100 scopus 로고    scopus 로고
    • EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson MD, McCarthy DJ, Smyth GK, (2010) edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26: 139-140
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 44
    • 33745595582 scopus 로고    scopus 로고
    • Identification and characterization of a virus-inducible non-coding RNA in mouse brain
    • Saha S, Murthy S, Rangarajan PN, (2006) Identification and characterization of a virus-inducible non-coding RNA in mouse brain. J Gen Virol 87: 1991-1995
    • (2006) J Gen Virol , vol.87 , pp. 1991-1995
    • Saha, S.1    Murthy, S.2    Rangarajan, P.N.3
  • 45
  • 48
    • 0025855933 scopus 로고
    • Monoclonal antibodies to double-stranded RNA as probes of RNA structure in crude nucleic acid extracts
    • Schonborn J, Oberstrass J, Breyel E, Tittgen J, Schumacher J, Lukacs N, (1991) Monoclonal antibodies to double-stranded RNA as probes of RNA structure in crude nucleic acid extracts. Nucleic Acids Res 19: 2993-3000
    • (1991) Nucleic Acids Res , vol.19 , pp. 2993-3000
    • Schonborn, J.1    Oberstrass, J.2    Breyel, E.3    Tittgen, J.4    Schumacher, J.5    Lukacs, N.6
  • 49
    • 58149398638 scopus 로고    scopus 로고
    • Colocalization of transactivation-responsive DNA-binding protein 43 and huntingtin in inclusions of Huntington disease
    • Schwab C, Arai T, Hasegawa M, Yu S, McGeer PL, (2008) Colocalization of transactivation-responsive DNA-binding protein 43 and huntingtin in inclusions of Huntington disease. J Neuropathol Exp Neurol 67: 1159-1165
    • (2008) J Neuropathol Exp Neurol , vol.67 , pp. 1159-1165
    • Schwab, C.1    Arai, T.2    Hasegawa, M.3    Yu, S.4    McGeer, P.L.5
  • 50
    • 77949878273 scopus 로고    scopus 로고
    • TDP-43 is a developmentally regulated protein essential for early embryonic development
    • Sephton CFGS, Atkin S, Dewey CM, Mayer P 3rd, Herz J, Yu G, (2010) TDP-43 is a developmentally regulated protein essential for early embryonic development. J Biol Chem 285: 6826-6834
    • (2010) J Biol Chem , vol.285 , pp. 6826-6834
    • Sephton, C.1    Atkin, S.2    Dewey, C.M.3    Mayer, P.4    Herz, J.5    Yu, G.6
  • 51
    • 33846925650 scopus 로고    scopus 로고
    • Modulating role of RNA structure in alternative splicing of a critical exon in the spinal muscular atrophy genes
    • Singh NN, Singh RN, Androphy EJ, (2007) Modulating role of RNA structure in alternative splicing of a critical exon in the spinal muscular atrophy genes. Nucleic Acids Res 35: 371-389
    • (2007) Nucleic Acids Res , vol.35 , pp. 371-389
    • Singh, N.N.1    Singh, R.N.2    Androphy, E.J.3
  • 52
    • 33745622860 scopus 로고    scopus 로고
    • Genomic localization of RNA binding proteins reveals links between pre-mRNA processing and transcription
    • Swinburne IA, Meyer CA, Liu XS, Silver PA, Brodsky AS, (2006) Genomic localization of RNA binding proteins reveals links between pre-mRNA processing and transcription. Genome Res 16: 912-921
    • (2006) Genome Res , vol.16 , pp. 912-921
    • Swinburne, I.A.1    Meyer, C.A.2    Liu, X.S.3    Silver, P.A.4    Brodsky, A.S.5
  • 53
    • 33748486517 scopus 로고    scopus 로고
    • AceView: A comprehensive cDNA-supported gene and transcripts annotation
    • 11-S12. 14
    • Thierry-Mieg D, Thierry-Mieg J, (2006) AceView: a comprehensive cDNA-supported gene and transcripts annotation. Genome Biol 7: S12. 11-S12. 14
    • (2006) Genome Biol , vol.7 , pp. S12
    • Thierry-Mieg, D.1    Thierry-Mieg, J.2
  • 55
    • 0344305774 scopus 로고    scopus 로고
    • Mutations in RNAi rescue aberrant chemotaxis of ADAR mutants
    • Tonkin LA, Bass BL, (2003) Mutations in RNAi rescue aberrant chemotaxis of ADAR mutants. Science 302: 1725
    • (2003) Science , vol.302 , pp. 1725
    • Tonkin, L.A.1    Bass, B.L.2
  • 57
    • 84864606276 scopus 로고    scopus 로고
    • TDP-1/TDP-43 regulates stress signaling and age-dependent proteotoxicity in Caenorhabditis elegans
    • Vaccaro A, Tauffenberger A, Ash PE, Carlomagno Y, Petrucelli L, Parker JA, (2012) TDP-1/TDP-43 regulates stress signaling and age-dependent proteotoxicity in Caenorhabditis elegans. PLoS Genet 8: e1002806
    • (2012) PLoS Genet , vol.8 , pp. e1002806
    • Vaccaro, A.1    Tauffenberger, A.2    Ash, P.E.3    Carlomagno, Y.4    Petrucelli, L.5    Parker, J.A.6
  • 58
    • 77649158879 scopus 로고    scopus 로고
    • Role of RNA structure in regulating pre-mRNA splicing
    • Warf MB, Berglund JA, (2010) Role of RNA structure in regulating pre-mRNA splicing. Trends Biochem Sci 35: 169-178
    • (2010) Trends Biochem Sci , vol.35 , pp. 169-178
    • Warf, M.B.1    Berglund, J.A.2
  • 59
    • 84864614462 scopus 로고    scopus 로고
    • Effects of ADARs on small RNA processing pathways in C. Elegans
    • Warf MB, Shepherd BA, Johnson WE, Bass BL, (2012) Effects of ADARs on small RNA processing pathways in C. elegans. Genome Res 22: 1488-1498
    • (2012) Genome Res , vol.22 , pp. 1488-1498
    • Warf, M.B.1    Shepherd, B.A.2    Johnson, W.E.3    Bass, B.L.4
  • 60
    • 75149119376 scopus 로고    scopus 로고
    • An unexpected ending: Noncanonical 3′ end processing mechanisms
    • Wilusz JE, Spector DL, (2010) An unexpected ending: noncanonical 3′ end processing mechanisms. RNA 16: 259-266
    • (2010) RNA , vol.16 , pp. 259-266
    • Wilusz, J.E.1    Spector, D.L.2
  • 61
    • 80455164552 scopus 로고    scopus 로고
    • Competition between ADAR and RNAi pathways for an extensive class of RNA targets
    • Wu D, Lamm AT, Fire AZ, (2011) Competition between ADAR and RNAi pathways for an extensive class of RNA targets. Nat Struct Mol Biol 18: 1094-1101
    • (2011) Nat Struct Mol Biol , vol.18 , pp. 1094-1101
    • Wu, D.1    Lamm, A.T.2    Fire, A.Z.3
  • 63
    • 84863263765 scopus 로고    scopus 로고
    • Caenorhabditis elegans RNA-processing protein TDP-1 regulates protein homeostasis and life span
    • Zhang T, Hwang HY, Hao H, Talbot C Jr, Wang J, (2012) Caenorhabditis elegans RNA-processing protein TDP-1 regulates protein homeostasis and life span. J Biol Chem 287: 8371-8382
    • (2012) J Biol Chem , vol.287 , pp. 8371-8382
    • Zhang, T.1    Hwang, H.Y.2    Hao, H.3    Talbot, C.4    Wang, J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.