-
4
-
-
0033954256
-
-
H. M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T. Bhat, H. Weissig, I. N. Shindyalov, P. E. Bourne, Nucleic Acids Res. 2000, 28, 235.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
5
-
-
75549088586
-
-
P. Vanhee, J. Reumers, F. Stricher, L. Baeten, L. Serrano, J. Schymkowitz, F. Rousseau, Nucleic Acids Res. 2010, 38, D545.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. D545
-
-
Vanhee, P.1
Reumers, J.2
Stricher, F.3
Baeten, L.4
Serrano, L.5
Schymkowitz, J.6
Rousseau, F.7
-
6
-
-
34548658287
-
-
T. Shtatland, D. Guettler, M. Kossodo, M. Pivovarov, R. Weissleder, BMC Bioinformatics 2007, 8, 280.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 280
-
-
Shtatland, T.1
Guettler, D.2
Kossodo, M.3
Pivovarov, M.4
Weissleder, R.5
-
7
-
-
75849126506
-
-
N. London, D. Movshovitz-Attias, O. Schueler-Furman, Structure 2010, 18, 188.
-
(2010)
Structure
, vol.18
, pp. 188
-
-
London, N.1
Movshovitz-Attias, D.2
Schueler-Furman, O.3
-
9
-
-
79959981040
-
-
N. London, B. Raveh, E. Cohen, G. Fathi, O. Schueler-Furman, Nucleic Acids Res. 2011, 39, W249.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. W249
-
-
London, N.1
Raveh, B.2
Cohen, E.3
Fathi, G.4
Schueler-Furman, O.5
-
10
-
-
79955716232
-
-
B. Raveh, N. London, L. Zimmerman, O. Schueler-Furman, PLoS One 2011, 6, e18934.
-
(2011)
PLoS One
, vol.6
, pp. e18934
-
-
Raveh, B.1
London, N.2
Zimmerman, L.3
Schueler-Furman, O.4
-
11
-
-
84874871709
-
-
M. Trellet, A. S. Melquiond, A. M. Bonvin, PLoS One 2013, 8, e58769.
-
(2013)
PLoS One
, vol.8
, pp. e58769
-
-
Trellet, M.1
Melquiond, A.S.2
Bonvin, A.M.3
-
13
-
-
77951223167
-
-
I. Antes, Proteins 2010, 78, 1084.
-
(2010)
Proteins
, vol.78
, pp. 1084
-
-
Antes, I.1
-
14
-
-
82955168441
-
-
O. Dagliyan, E. A. Proctor, K. M. D'Auria, F. Ding, N. V. Dokholyan, Structure 2011, 19, 1837.
-
(2011)
Structure
, vol.19
, pp. 1837
-
-
Dagliyan, O.1
Proctor, E.A.2
D'Auria, K.M.3
Ding, F.4
Dokholyan, N.V.5
-
18
-
-
0035025191
-
-
T. J. Ewing, S. Makino, A. G. Skillman, I. D. Kuntz, J. Comput.-Aided Mol. Des. 2001, 15, 411.
-
(2001)
J. Comput.-Aided Mol. Des.
, vol.15
, pp. 411
-
-
Ewing, T.J.1
Makino, S.2
Skillman, A.G.3
Kuntz, I.D.4
-
19
-
-
70349932423
-
-
G. M. Morris, R. Huey, W. Lindstrom, M. F. Sanner, R. K. Belew, D. S. Goodsell, A. J. Olson, J. Comput. Chem. 2009, 30, 2785.
-
(2009)
J. Comput. Chem.
, vol.30
, pp. 2785
-
-
Morris, G.M.1
Huey, R.2
Lindstrom, W.3
Sanner, M.F.4
Belew, R.K.5
Goodsell, D.S.6
Olson, A.J.7
-
20
-
-
12144289984
-
-
R. A. Friesner, J. L. Banks, R. B. Murphy, T. A. Halgren, J. J. Klicic, D. T. Mainz, M. P. Repasky, E. H. Knoll, M. Shelley, J. K. Perry, D. E. Shaw, P. Francis, P. S. Shenkin, J. Med. Chem. 2004, 47, 1739.
-
(2004)
J. Med. Chem.
, vol.47
, pp. 1739
-
-
Friesner, R.A.1
Banks, J.L.2
Murphy, R.B.3
Halgren, T.A.4
Klicic, J.J.5
Mainz, D.T.6
Repasky, M.P.7
Knoll, E.H.8
Shelley, M.9
Perry, J.K.10
Shaw, D.E.11
Francis, P.12
Shenkin, P.S.13
-
21
-
-
0041919542
-
-
M. L. Verdonk, J. C. Cole, M. J. Hartshorn, C. W. Murray, R. D. Taylor, Proteins 2003, 52, 609.
-
(2003)
Proteins
, vol.52
, pp. 609
-
-
Verdonk, M.L.1
Cole, J.C.2
Hartshorn, M.J.3
Murray, C.W.4
Taylor, R.D.5
-
24
-
-
0030979125
-
-
J. Ruppert, W. Welch, A. N. Jain, Protein Sci. 1997, 6, 524.
-
(1997)
Protein Sci.
, vol.6
, pp. 524
-
-
Ruppert, J.1
Welch, W.2
Jain, A.N.3
-
25
-
-
33747818007
-
-
J. Dundas, Z. Ouyang, J. Tseng, A. Binkowski, Y. Turpaz, J. Liang, Nucleic Acids Res. 2006, 34, W116.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. W116
-
-
Dundas, J.1
Ouyang, Z.2
Tseng, J.3
Binkowski, A.4
Turpaz, Y.5
Liang, J.6
-
26
-
-
69249150494
-
-
B. Huang, OMICS 2009, 13, 325.
-
(2009)
OMICS
, vol.13
, pp. 325
-
-
Huang, B.1
-
27
-
-
75249088440
-
-
J. Yu, Y. Zhou, I. Tanaka, M. Yao, Bioinformatics 2010, 26, 46.
-
(2010)
Bioinformatics
, vol.26
, pp. 46
-
-
Yu, J.1
Zhou, Y.2
Tanaka, I.3
Yao, M.4
-
30
-
-
0038526303
-
-
R. Chen, L. Li, Z. Weng, Proteins 2003, 52, 80.
-
(2003)
Proteins
, vol.52
, pp. 80
-
-
Chen, R.1
Li, L.2
Weng, Z.3
-
32
-
-
36748998784
-
-
S. J. de Vries, A. D. J. van Dijk, M. Krzeminski, M. van Dijk, A. Thureau, V. Hsu, T. Wassenaar, A. M. J. J. Bonvin, Proteins 2007, 69, 726.
-
(2007)
Proteins
, vol.69
, pp. 726
-
-
De Vries, S.J.1
Van Dijk, A.D.J.2
Krzeminski, M.3
Van Dijk, M.4
Thureau, A.5
Hsu, V.6
Wassenaar, T.7
Bonvin, A.M.J.J.8
-
33
-
-
33749020839
-
-
D. Kozakov, R. Brenke, S. R. Comeau, S. Vajda. Proteins 2006, 65, 392.
-
(2006)
Proteins
, vol.65
, pp. 392
-
-
Kozakov, D.1
Brenke, R.2
Comeau, S.R.3
Vajda, S.4
-
34
-
-
84875151263
-
-
M. Torchala, I. H. Moal, R. A. Chaleil, J. Fernandez-Recio, P. A. Bates, Bioinformatics 2013, 29, 807.
-
(2013)
Bioinformatics
, vol.29
, pp. 807
-
-
Torchala, M.1
Moal, I.H.2
Chaleil, R.A.3
Fernandez-Recio, J.4
Bates, P.A.5
-
36
-
-
85170282443
-
-
Portland, OR
-
M. Ester, H.-P. Kriegel, J. Sander, X. Xu, In Proceedings of the 2nd International Conference on Knowledge Discovery and Data Mining (KDD-96), Vol. 96; Portland, OR, 1996; pp. 226-231.
-
(1996)
Proceedings of the 2nd International Conference on Knowledge Discovery and Data Mining (KDD-96)
, vol.96
, pp. 226-231
-
-
Ester, M.1
Kriegel, H.-P.2
Sander, J.3
Xu, X.4
-
37
-
-
63549128280
-
-
E. Petsalaki, A. Stark, E. García-Urdiales, R. B. Russell, PLoS Comput. Biol. 2009, 5, e1000335.
-
(2009)
PLoS Comput. Biol.
, vol.5
, pp. e1000335
-
-
Petsalaki, E.1
Stark, A.2
García-Urdiales, E.3
Russell, R.B.4
-
38
-
-
84864419151
-
-
L. G. Trabuco, S. Lise, E. Petsalaki, R. B. Russell, Nucleic Acids Res. 2012 40, W423.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. W423
-
-
Trabuco, L.G.1
Lise, S.2
Petsalaki, E.3
Russell, R.B.4
-
39
-
-
84888294694
-
-
A. Lavi, C. H. Ngan, D. Movshovitz-Attias, T. Bohnuud, C. Yueh, D. Beglov, O. Schueler-Furman, D. Kozakov, Proteins 2013, 81, 2096.
-
(2013)
Proteins
, vol.81
, pp. 2096
-
-
Lavi, A.1
Ngan, C.H.2
Movshovitz-Attias, D.3
Bohnuud, T.4
Yueh, C.5
Beglov, D.6
Schueler-Furman, O.7
Kozakov, D.8
-
40
-
-
33947658802
-
-
M. R. Landon, D. R. Lancia, J. Yu, S. C. Thiel, S. Vajda, J. Med. Chem., 2007, 50, 1231.
-
(2007)
J. Med. Chem.
, vol.50
, pp. 1231
-
-
Landon, M.R.1
Lancia, D.R.2
Yu, J.3
Thiel, S.C.4
Vajda, S.5
-
41
-
-
61449104961
-
-
R. Brenke, D. Kozakov, G.-Y. Chuang, D. Beglov, D. Hall, M. R. Landon, C. Mattos, S. Vajda, Bioinformatics 2009, 25, 621.
-
(2009)
Bioinformatics
, vol.25
, pp. 621
-
-
Brenke, R.1
Kozakov, D.2
Chuang, G.-Y.3
Beglov, D.4
Hall, D.5
Landon, M.R.6
Mattos, C.7
Vajda, S.8
-
42
-
-
0033056947
-
-
N. M. Mahoney, D. A. Rozwarski, E. Fedorov, A. A. Fedorov, S. C. Almo, Nat. Struct. Mol. Biol. 1999, 6, 666.
-
(1999)
Nat. Struct. Mol. Biol.
, vol.6
, pp. 666
-
-
Mahoney, N.M.1
Rozwarski, D.A.2
Fedorov, E.3
Fedorov, A.A.4
Almo, S.C.5
-
43
-
-
80052903046
-
-
B. G. Pierce, Y. Hourai, Z. Weng, PLoS one 2011, 6, e24657.
-
(2011)
PLoS One
, vol.6
, pp. e24657
-
-
Pierce, B.G.1
Hourai, Y.2
Weng, Z.3
-
45
-
-
84888298806
-
-
S.-Y. Huang, C. Yan, S. Z. Grinter, S. Chang, L. Jiang, X. Zou, Proteins 2013, 81, 2183.
-
(2013)
Proteins
, vol.81
, pp. 2183
-
-
Huang, S.-Y.1
Yan, C.2
Grinter, S.Z.3
Chang, S.4
Jiang, L.5
Zou, X.6
-
47
-
-
0003742069
-
-
Department of Biochemistry and Molecular Biology, University College London: London, England
-
S. J. Hubbard, J. M. Thornton, Naccess Computer Program; Department of Biochemistry and Molecular Biology, University College London: London, England, 1993.
-
(1993)
Naccess Computer Program
-
-
Hubbard, S.J.1
Thornton, J.M.2
-
48
-
-
78651277458
-
-
R. P. Joosten, T. A. Te Beek, E. Krieger, M. L. Hekkelman, R. W. Hooft, R. Schneider, C. Sander, G. Vriend, Nucleic Acids Res. 2011, 39, D411.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D411
-
-
Joosten, R.P.1
Te Beek, T.A.2
Krieger, E.3
Hekkelman, M.L.4
Hooft, R.W.5
Schneider, R.6
Sander, C.7
Vriend, G.8
-
50
-
-
0032505172
-
-
J. Wagner, J. Kallen, C. Ehrhardt, J.-P. Evenou, D. Wagner, J. Med. Chem. 1998, 41, 3664.
-
(1998)
J. Med. Chem.
, vol.41
, pp. 3664
-
-
Wagner, J.1
Kallen, J.2
Ehrhardt, C.3
Evenou, J.-P.4
Wagner, D.5
-
51
-
-
0141483200
-
-
M. K. Hoellerer, M. E. Noble, G. Labesse, I. D. Campbell, J. M. Werner, S. T. Arold, Structure 2003, 11, 1207.
-
(2003)
Structure
, vol.11
, pp. 1207
-
-
Hoellerer, M.K.1
Noble, M.E.2
Labesse, G.3
Campbell, I.D.4
Werner, J.M.5
Arold, S.T.6
-
52
-
-
17944368301
-
-
M. Harel, R. Kasher, A. Nicolas, J. M. Guss, M. Balass, M. Fridkin, A. B. Smit, K. Brejc, T. K. Sixma, E. Katchalski-Katzir, J. L. Sussman, S. Fuchs, Neuron 2001, 32, 265.
-
(2001)
Neuron
, vol.32
, pp. 265
-
-
Harel, M.1
Kasher, R.2
Nicolas, A.3
Guss, J.M.4
Balass, M.5
Fridkin, M.6
Smit, A.B.7
Brejc, K.8
Sixma, T.K.9
Katchalski-Katzir, E.10
Sussman, J.L.11
Fuchs, S.12
-
53
-
-
49149093447
-
-
J. Chen, L. Pan, Z. Wei, Y. Zhao, M. Zhang, EMBO J. 2008, 27, 2113.
-
(2008)
EMBO J.
, vol.27
, pp. 2113
-
-
Chen, J.1
Pan, L.2
Wei, Z.3
Zhao, Y.4
Zhang, M.5
-
54
-
-
84918832981
-
-
C. H. Ngan, T. Bohnuud, S. E. Mottarella, D. Beglov, E. A. Villar, D. R. Hall1, D. Kozakov S. Vajda, Nucleic Acids Res. 2012, gks441, 1.
-
(2012)
Nucleic Acids Res.
, vol.GKS441
, pp. 1
-
-
Ngan, C.H.1
Bohnuud, T.2
Mottarella, S.E.3
Beglov, D.4
Villar, E.A.5
Hall, D.R.6
Kozakov, D.7
Vajda, S.8
-
55
-
-
66149103553
-
-
T. Cheng, X. Li, Y. Li, Z. Liu, R. Wang, J. Chem. Inf. Model. 2009, 49, 1079.
-
(2009)
J. Chem. Inf. Model.
, vol.49
, pp. 1079
-
-
Cheng, T.1
Li, X.2
Li, Y.3
Liu, Z.4
Wang, R.5
|