-
1
-
-
0020659327
-
A novel method of representation of nucleotide series especially suited for long DNA sequences
-
Hamori E., Ruskin J., curves H. A novel method of representation of nucleotide series especially suited for long DNA sequences. J. Biol. Chem. 1983, 258:1318-1327.
-
(1983)
J. Biol. Chem.
, vol.258
, pp. 1318-1327
-
-
Hamori, E.1
Ruskin, J.2
Curves, H.3
-
2
-
-
0024340861
-
Graphic representation of long DNA sequences by the method of H curves-current results and future aspects
-
Hamori E. Graphic representation of long DNA sequences by the method of H curves-current results and future aspects. BioTechniques 1989, 7:710-720.
-
(1989)
BioTechniques
, vol.7
, pp. 710-720
-
-
Hamori, E.1
-
3
-
-
0025340372
-
Chaos game representation of gene structure
-
Jeffrey H.J. Chaos game representation of gene structure. Nucleic Acids Res. 1990, 18:2163-2170.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 2163-2170
-
-
Jeffrey, H.J.1
-
4
-
-
0000347441
-
A new graphic representation and analysis of DNA sequence structure: I. Methodology and application to globin genes
-
Nandy A. A new graphic representation and analysis of DNA sequence structure: I. Methodology and application to globin genes. Curr. Sci. 1994, 66:309-314.
-
(1994)
Curr. Sci.
, vol.66
, pp. 309-314
-
-
Nandy, A.1
-
5
-
-
72949106535
-
Four-component spectral representation of DNA sequences
-
Bielinska-Waz D. Four-component spectral representation of DNA sequences. J. Math. Chem. 2010, 47(1):41-51.
-
(2010)
J. Math. Chem.
, vol.47
, Issue.1
, pp. 41-51
-
-
Bielinska-Waz, D.1
-
6
-
-
34447633537
-
Distribution moments of 2D-graphs as descriptors of DNA sequences
-
Bielinska-Waz D., Nowak W., Waz P., Nandy A., Clark T. Distribution moments of 2D-graphs as descriptors of DNA sequences. Chem. Phys. Lett. 2007, 443(4-6):408-413.
-
(2007)
Chem. Phys. Lett.
, vol.443
, Issue.4-6
, pp. 408-413
-
-
Bielinska-Waz, D.1
Nowak, W.2
Waz, P.3
Nandy, A.4
Clark, T.5
-
7
-
-
77955500711
-
Classification studies based on a spectral representation of DNA
-
Bielinska-Waz D., Subramaniam S. Classification studies based on a spectral representation of DNA. J. Theor. Biol. 2010, 266(4):667-674.
-
(2010)
J. Theor. Biol.
, vol.266
, Issue.4
, pp. 667-674
-
-
Bielinska-Waz, D.1
Subramaniam, S.2
-
8
-
-
3142704623
-
New 2-D graphic representation of DNA sequences
-
Liao B., Wang T.M. New 2-D graphic representation of DNA sequences. J. Comput. Chem. 2004, 25(11):1364-1368.
-
(2004)
J. Comput. Chem.
, vol.25
, Issue.11
, pp. 1364-1368
-
-
Liao, B.1
Wang, T.M.2
-
9
-
-
42349101849
-
Analysis of similarity/dissimilarity of DNA sequences based on dual nucleotides
-
Liao B., Zeng C., Li F.Q., Tang Y. Analysis of similarity/dissimilarity of DNA sequences based on dual nucleotides. Match-Commun. Math. Co. 2008, 59(3):647-652.
-
(2008)
Match-Commun. Math. Co.
, vol.59
, Issue.3
, pp. 647-652
-
-
Liao, B.1
Zeng, C.2
Li, F.Q.3
Tang, Y.4
-
10
-
-
84880333503
-
A new graphical coding of DNA sequence and its similarity calculation
-
Liao B., Xiang Q.L., Cai L.J. A new graphical coding of DNA sequence and its similarity calculation. Physica A 2013, 392(19):4663-4667.
-
(2013)
Physica A
, vol.392
, Issue.19
, pp. 4663-4667
-
-
Liao, B.1
Xiang, Q.L.2
Cai, L.J.3
-
11
-
-
0037435485
-
Novel 2-D graphic representation of DNA sequences and their numerical characterization
-
Randić M., Vračko M., Nella L., Dejan P. Novel 2-D graphic representation of DNA sequences and their numerical characterization. Chem. Phys. Lett. 2003, 368:1-6.
-
(2003)
Chem. Phys. Lett.
, vol.368
, pp. 1-6
-
-
Randić, M.1
Vračko, M.2
Nella, L.3
Dejan, P.4
-
12
-
-
41749104182
-
Another look at the chaos-game representation of DNA
-
Randić M. Another look at the chaos-game representation of DNA. Chem. Phys. Lett. 2008, 456:84-88.
-
(2008)
Chem. Phys. Lett.
, vol.456
, pp. 84-88
-
-
Randić, M.1
-
13
-
-
38549146281
-
On representation of DNA by line distance matrix
-
Randić M., Zupan J., Pisanski T. On representation of DNA by line distance matrix. J. Math. Chem. 2008, 43(2):674-692.
-
(2008)
J. Math. Chem.
, vol.43
, Issue.2
, pp. 674-692
-
-
Randić, M.1
Zupan, J.2
Pisanski, T.3
-
14
-
-
33845362256
-
Characterization of complex biological systems by matrix invariants
-
Jaklic G., Pisanski T., Randić M. Characterization of complex biological systems by matrix invariants. J. Comput. Biol. 2006, 13(9):1558-1564.
-
(2006)
J. Comput. Biol.
, vol.13
, Issue.9
, pp. 1558-1564
-
-
Jaklic, G.1
Pisanski, T.2
Randić, M.3
-
15
-
-
84882340001
-
Non-Degenerate graphical representation of DNA sequences and its applications to phylogenetic analysis
-
Yang Y., Zhang Y., Jia M., Li C., Meng L. Non-Degenerate graphical representation of DNA sequences and its applications to phylogenetic analysis. Comb. Chem. High. T. Scr. 2013, 16(8):585-589.
-
(2013)
Comb. Chem. High. T. Scr.
, vol.16
, Issue.8
, pp. 585-589
-
-
Yang, Y.1
Zhang, Y.2
Jia, M.3
Li, C.4
Meng, L.5
-
16
-
-
80053179147
-
Using huffman coding method to visualize and analyze DNA sequences
-
Qi Z.H., Li L. Using huffman coding method to visualize and analyze DNA sequences. J. Comput. Chem. 2011, 32(15):3233-3240.
-
(2011)
J. Comput. Chem.
, vol.32
, Issue.15
, pp. 3233-3240
-
-
Qi, Z.H.1
Li, L.2
-
17
-
-
84896797052
-
Graphic mapping of protein-coding DNA sequence in four-dimensional space and its application
-
Qi X.Q., Li X.H., Qi Z.H. Graphic mapping of protein-coding DNA sequence in four-dimensional space and its application. J. Comput. Theor Nanos 2014, 11(5):1244-1251.
-
(2014)
J. Comput. Theor Nanos
, vol.11
, Issue.5
, pp. 1244-1251
-
-
Qi, X.Q.1
Li, X.H.2
Qi, Z.H.3
-
18
-
-
77649310414
-
New method for global alignment of 2 DNA sequences by the tree data structure
-
Qi Z.H., Qi X.Q., Liu C.C. New method for global alignment of 2 DNA sequences by the tree data structure. J. Theor. Biol. 2010, 263(2):227-236.
-
(2010)
J. Theor. Biol.
, vol.263
, Issue.2
, pp. 227-236
-
-
Qi, Z.H.1
Qi, X.Q.2
Liu, C.C.3
-
19
-
-
2442509138
-
2-D graphical representation of proteins based on virtual genetic code
-
Randić M. 2-D graphical representation of proteins based on virtual genetic code. Sar Qsar Environ. Res. 2004, 15(3):147-157.
-
(2004)
Sar Qsar Environ. Res.
, vol.15
, Issue.3
, pp. 147-157
-
-
Randić, M.1
-
20
-
-
7444235858
-
Unique graphical representation of protein sequences based on nucleotide triplet codons
-
Randić M., Zupan J., Balaban A.T. Unique graphical representation of protein sequences based on nucleotide triplet codons. Chem. Phys. Lett. 2004, 397(1):247-252.
-
(2004)
Chem. Phys. Lett.
, vol.397
, Issue.1
, pp. 247-252
-
-
Randić, M.1
Zupan, J.2
Balaban, A.T.3
-
21
-
-
32344433839
-
Novel 2-D graphical representation of proteins
-
Randić M., Butina D., Zupan J. Novel 2-D graphical representation of proteins. Chem. Phys. Lett. 2006, 419(4):528-532.
-
(2006)
Chem. Phys. Lett.
, vol.419
, Issue.4
, pp. 528-532
-
-
Randić, M.1
Butina, D.2
Zupan, J.3
-
22
-
-
24644463186
-
A 2-D graphical representation of protein sequences based on nucleotide triplet codons
-
Bai F., Wang T. A 2-D graphical representation of protein sequences based on nucleotide triplet codons. Chem. Phys. Lett. 2005, 413(4):458-462.
-
(2005)
Chem. Phys. Lett.
, vol.413
, Issue.4
, pp. 458-462
-
-
Bai, F.1
Wang, T.2
-
23
-
-
84859636830
-
A 3D graphical representation of protein sequences based on the Gray code
-
He P.A., Li D., Zhang Y., Wang X., Yao Y. A 3D graphical representation of protein sequences based on the Gray code. J. Theor. Biol. 2012, 304:81-87.
-
(2012)
J. Theor. Biol.
, vol.304
, pp. 81-87
-
-
He, P.A.1
Li, D.2
Zhang, Y.3
Wang, X.4
Yao, Y.5
-
24
-
-
34248647897
-
2-D Graphical representation of proteins based on physico-chemical properties of amino acids
-
Randić M. 2-D Graphical representation of proteins based on physico-chemical properties of amino acids. Chem. Phys. Lett. 2007, 440(4):291-295.
-
(2007)
Chem. Phys. Lett.
, vol.440
, Issue.4
, pp. 291-295
-
-
Randić, M.1
-
25
-
-
58149316600
-
Analysis of similarity/dissimilarity of protein sequences
-
Yao Y.H., Dai Q., Li C., He P.A., Nan X.Y., Zhang Y.Z. Analysis of similarity/dissimilarity of protein sequences. Proteins 2008, 73(4):864-871.
-
(2008)
Proteins
, vol.73
, Issue.4
, pp. 864-871
-
-
Yao, Y.H.1
Dai, Q.2
Li, C.3
He, P.A.4
Nan, X.Y.5
Zhang, Y.Z.6
-
26
-
-
77956169760
-
3D graphical representation of protein sequences and their statistical characterization
-
Maaty M.I., Abo-Elkhier M.M., Elwahaab M. 3D graphical representation of protein sequences and their statistical characterization. Physica A 2010, 389(21):4668-4676.
-
(2010)
Physica A
, vol.389
, Issue.21
, pp. 4668-4676
-
-
Maaty, M.I.1
Abo-Elkhier, M.M.2
Elwahaab, M.3
-
27
-
-
77955673069
-
2D-MH: A web-server for generating graphic representation of protein sequences based on the physicochemical properties of their constituent amino acids
-
Wu Z.C., Xiao X., Chou K.C. 2D-MH: A web-server for generating graphic representation of protein sequences based on the physicochemical properties of their constituent amino acids. J. Theor. Biol. 2010, 267(1):29-34.
-
(2010)
J. Theor. Biol.
, vol.267
, Issue.1
, pp. 29-34
-
-
Wu, Z.C.1
Xiao, X.2
Chou, K.C.3
-
28
-
-
79951633245
-
Graphical representation of proteins
-
Randić M., Zupan J., Balaban A.T., VikicD-TopicD D., Plavšić D. Graphical representation of proteins. Chem. Rev. 2011, 111(2):790-862.
-
(2011)
Chem. Rev.
, vol.111
, Issue.2
, pp. 790-862
-
-
Randić, M.1
Zupan, J.2
Balaban, A.T.3
VikicD-TopicD, D.4
Plavšić, D.5
-
29
-
-
77953039087
-
Similarity/dissimilarity studies of protein sequences based on a new 2D graphical representation
-
Yao Y.H., Dai Q., Li L., Nan X.Y., He P.A., Zhang Y.Z. Similarity/dissimilarity studies of protein sequences based on a new 2D graphical representation. J. Comput. Chem. 2010, 31(5):1045-1052.
-
(2010)
J. Comput. Chem.
, vol.31
, Issue.5
, pp. 1045-1052
-
-
Yao, Y.H.1
Dai, Q.2
Li, L.3
Nan, X.Y.4
He, P.A.5
Zhang, Y.Z.6
-
30
-
-
84860389050
-
Protein map: an alignment-free sequence comparison method based on various properties of amino acids
-
Yu C., Cheng S.Y., He R.L., Yau S.S.-T. Protein map: an alignment-free sequence comparison method based on various properties of amino acids. Gene 2011, 486(1):110-118.
-
(2011)
Gene
, vol.486
, Issue.1
, pp. 110-118
-
-
Yu, C.1
Cheng, S.Y.2
He, R.L.3
Yau, S.S.-T.4
-
31
-
-
84873853768
-
Biomolecular coronas provide the biological identity of nanosized materials
-
Monopoli M.P., Aberg C., Salvati A., Dawson K.A. Biomolecular coronas provide the biological identity of nanosized materials. Nat. Nanotechnol. 2012, 7(12):779-786.
-
(2012)
Nat. Nanotechnol.
, vol.7
, Issue.12
, pp. 779-786
-
-
Monopoli, M.P.1
Aberg, C.2
Salvati, A.3
Dawson, K.A.4
-
32
-
-
84901045080
-
Diagnostic nanoparticle targeting of the EGF-receptor in complex biological conditions using single-domain antibodies
-
Zarschler K., Prapainop K., Mahon E., Rocks L., Bramini M., Kelly P.M., Stephan H., Dawson K.A. Diagnostic nanoparticle targeting of the EGF-receptor in complex biological conditions using single-domain antibodies. Nanoscale 2014, 6(11):6046-6056.
-
(2014)
Nanoscale
, vol.6
, Issue.11
, pp. 6046-6056
-
-
Zarschler, K.1
Prapainop, K.2
Mahon, E.3
Rocks, L.4
Bramini, M.5
Kelly, P.M.6
Stephan, H.7
Dawson, K.A.8
-
33
-
-
0016197604
-
Amino acid difference formula to help explain protein evolution
-
Grantham R. Amino acid difference formula to help explain protein evolution. Science 1974, 185(4154):862-864.
-
(1974)
Science
, vol.185
, Issue.4154
, pp. 862-864
-
-
Grantham, R.1
-
34
-
-
0013997503
-
On the fundamental nature and evolution of the genetic code
-
Woese C.R., Dugre D.H., Dugre S.A., Kondo M., Saxinger W.C. On the fundamental nature and evolution of the genetic code. Cold Spring Harb. Sym. 1966, 31:723-736.
-
(1966)
Cold Spring Harb. Sym.
, vol.31
, pp. 723-736
-
-
Woese, C.R.1
Dugre, D.H.2
Dugre, S.A.3
Kondo, M.4
Saxinger, W.C.5
-
35
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte J., Doolittle R.F. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 1982, 157(1):105-132.
-
(1982)
J. Mol. Biol.
, vol.157
, Issue.1
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
36
-
-
0014581827
-
The genetic code and error transmission
-
Alff-Steinberger C. The genetic code and error transmission. Proc. Natl. Acad. Sci. USA 1969, 64(2):584-591.
-
(1969)
Proc. Natl. Acad. Sci. USA
, vol.64
, Issue.2
, pp. 584-591
-
-
Alff-Steinberger, C.1
-
37
-
-
0013965569
-
Relations between chemical structure and biological activity
-
Sneath P.H.A. Relations between chemical structure and biological activity. J. Theor. Biol. 1966, 12(2):157-195.
-
(1966)
J. Theor. Biol.
, vol.12
, Issue.2
, pp. 157-195
-
-
Sneath, P.H.A.1
-
39
-
-
0000325341
-
And planes of closest fit to systems of points in space
-
Pearson K., lines On and planes of closest fit to systems of points in space. Philos. Mag. 1901, 2(11):559-572.
-
(1901)
Philos. Mag.
, vol.2
, Issue.11
, pp. 559-572
-
-
Pearson, K.1
Lines, O.2
-
40
-
-
55549132598
-
Principal component analysis and quantitative image analysis to predict effects of toxics in anaerobic granular sludge
-
Costa J.C., Alves M.M., Ferreira E.C. Principal component analysis and quantitative image analysis to predict effects of toxics in anaerobic granular sludge. Bioresource Technol. 2009, 100:1180-1185.
-
(2009)
Bioresource Technol.
, vol.100
, pp. 1180-1185
-
-
Costa, J.C.1
Alves, M.M.2
Ferreira, E.C.3
-
41
-
-
33646568767
-
Amino acid principal component analysis (AAPCA) and its applications in protein structural class prediction
-
Du Q.S., Jiang Z.Q., He W.Z., Li D.P., Chou K.C. Amino acid principal component analysis (AAPCA) and its applications in protein structural class prediction. J. Biomol. Struct. Dyn. 2006, 23(6):635-640.
-
(2006)
J. Biomol. Struct. Dyn.
, vol.23
, Issue.6
, pp. 635-640
-
-
Du, Q.S.1
Jiang, Z.Q.2
He, W.Z.3
Li, D.P.4
Chou, K.C.5
-
42
-
-
52149087297
-
Predicting membrane protein types by the LLDA algorithm
-
Wang T., Yang J., Shen H.B., Chou K.C. Predicting membrane protein types by the LLDA algorithm. Protein Peptide Lett. 2008, 15(9):915-921.
-
(2008)
Protein Peptide Lett.
, vol.15
, Issue.9
, pp. 915-921
-
-
Wang, T.1
Yang, J.2
Shen, H.B.3
Chou, K.C.4
-
43
-
-
78650473254
-
A combination dimensionality reduction approach to codon position patterns of eubacteria based on their complete genomes
-
Qi Z.H., Wei R.Y. A combination dimensionality reduction approach to codon position patterns of eubacteria based on their complete genomes. J. Theor. Biol. 2011, 272(1):26-34.
-
(2011)
J. Theor. Biol.
, vol.272
, Issue.1
, pp. 26-34
-
-
Qi, Z.H.1
Wei, R.Y.2
-
44
-
-
65449167165
-
DV-Curve: a novel intuitive tool for visualizing and analyzing DNA sequences
-
Zhang Z.J. DV-Curve: a novel intuitive tool for visualizing and analyzing DNA sequences. Bioinformatics 2009, 25(9):1112-1117.
-
(2009)
Bioinformatics
, vol.25
, Issue.9
, pp. 1112-1117
-
-
Zhang, Z.J.1
-
45
-
-
84862820743
-
Application of 2D graphic representation of protein sequence based on Huffman tree method
-
Qi Z.H., Feng J., Qi X.Q., Li L. Application of 2D graphic representation of protein sequence based on Huffman tree method. Comput. Biol. Med. 2012, 42(5):556-563.
-
(2012)
Comput. Biol. Med.
, vol.42
, Issue.5
, pp. 556-563
-
-
Qi, Z.H.1
Feng, J.2
Qi, X.Q.3
Li, L.4
-
46
-
-
0037435485
-
Novel 2-D graphic representation of DNA sequences and their numerical characterization
-
Randić M., Vračko M., Nella L., Dejan P. Novel 2-D graphic representation of DNA sequences and their numerical characterization. Chem. Phys. Lett. 2003, 368(1-2):1-6.
-
(2003)
Chem. Phys. Lett.
, vol.368
, Issue.1-2
, pp. 1-6
-
-
Randić, M.1
Vračko, M.2
Nella, L.3
Dejan, P.4
-
47
-
-
34247869892
-
Novel 2D graphic representation of DNA sequence based on dual nucleotides
-
Qi Z.H., Qi X.Q. Novel 2D graphic representation of DNA sequence based on dual nucleotides. Chem. Phys. Lett. 2007, 440(1-3):139-144.
-
(2007)
Chem. Phys. Lett.
, vol.440
, Issue.1-3
, pp. 139-144
-
-
Qi, Z.H.1
Qi, X.Q.2
-
48
-
-
57649146899
-
Graphic representation of proteins as four-color maps and their numerical characterization
-
Randić M., Mehulić K., Vukičević D., Pisanski T., Vikić-Topić D., Plavšić D. Graphic representation of proteins as four-color maps and their numerical characterization. J. Mol. Graph. Model. 2009, 27(5):637-641.
-
(2009)
J. Mol. Graph. Model.
, vol.27
, Issue.5
, pp. 637-641
-
-
Randić, M.1
Mehulić, K.2
Vukičević, D.3
Pisanski, T.4
Vikić-Topić, D.5
Plavšić, D.6
-
49
-
-
77958498251
-
A novel method for similarity analysis and protein sub-cellular localization prediction
-
Liao B., Liao B.Y., Sun X.M., Zeng Q.G. A novel method for similarity analysis and protein sub-cellular localization prediction. Bioinformatics 2010, 26(21):2678-2683.
-
(2010)
Bioinformatics
, vol.26
, Issue.21
, pp. 2678-2683
-
-
Liao, B.1
Liao, B.Y.2
Sun, X.M.3
Zeng, Q.G.4
-
50
-
-
84896715949
-
A novel descriptor of protein sequences and its application
-
Yao Y.H., Yan S.J., Han Jianning, Dai Q.i., Ping-an H.e. A novel descriptor of protein sequences and its application. J. Theor. Biol. 2014, 347:109-117.
-
(2014)
J. Theor. Biol.
, vol.347
, pp. 109-117
-
-
Yao, Y.H.1
Yan, S.J.2
Han, J.3
Dai, Q.4
Ping-an, H.5
-
51
-
-
85067776017
-
-
Pandemic (H1N1) - update 64. WHO.
-
World Health Organization (WHO), 2011a. Pandemic (H1N1) - update 64. WHO. http://www.who.int/csr/don%20/2009_09_04/en/index.html.
-
(2011)
-
-
-
52
-
-
84894026161
-
Evolution trends of the 2009 pandemic influenza A (H1N1) viruses in different continents from March 2009 to April 2012
-
Qi Z.H., Feng J., Liu C.C. Evolution trends of the 2009 pandemic influenza A (H1N1) viruses in different continents from March 2009 to April 2012. Biologia 2014, 69(4):407-418.
-
(2014)
Biologia
, vol.69
, Issue.4
, pp. 407-418
-
-
Qi, Z.H.1
Feng, J.2
Liu, C.C.3
|