메뉴 건너뛰기




Volumn 304, Issue , 2012, Pages 81-87

A 3D graphical representation of protein sequences based on the Gray code

Author keywords

Binary code; CGR; Correlation and significance analysis; Mathematical descriptors

Indexed keywords

REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE;

EID: 84859636830     PISSN: 00225193     EISSN: 10958541     Source Type: Journal    
DOI: 10.1016/j.jtbi.2012.03.023     Document Type: Article
Times cited : (37)

References (32)
  • 1
    • 33645325372 scopus 로고    scopus 로고
    • On graphical and numerical representation of protein sequences
    • Bai F.L., Wang T.M. On graphical and numerical representation of protein sequences. J. Biomol. Struct. Dyn. 2006, 23:537-545.
    • (2006) J. Biomol. Struct. Dyn. , vol.23 , pp. 537-545
    • Bai, F.L.1    Wang, T.M.2
  • 3
    • 77956169760 scopus 로고    scopus 로고
    • 3D graphical representation of protein sequences and their statistical characterization
    • El Maaty M.I.A., Abo-Elkhier M.M., Abd Elwahaab M.A. 3D graphical representation of protein sequences and their statistical characterization. Physica A 2010, 389:4668-4676.
    • (2010) Physica A , vol.389 , pp. 4668-4676
    • El Maaty, M.I.A.1    Abo-Elkhier, M.M.2    Abd Elwahaab, M.A.3
  • 4
    • 52149106884 scopus 로고    scopus 로고
    • Characterization of protein primary sequences based on partial ordering
    • Feng J., Wang T.M. Characterization of protein primary sequences based on partial ordering. J. Theor. Biol. 2008, 254:752-755.
    • (2008) J. Theor. Biol. , vol.254 , pp. 752-755
    • Feng, J.1    Wang, T.M.2
  • 6
    • 77956396778 scopus 로고    scopus 로고
    • A new graphical representation of similarity/dissimilarity studies of protein sequences
    • He P.A. A new graphical representation of similarity/dissimilarity studies of protein sequences. SAR QSAR Environ. Res. 2010, 21:571-580.
    • (2010) SAR QSAR Environ. Res. , vol.21 , pp. 571-580
    • He, P.A.1
  • 7
    • 77954280483 scopus 로고    scopus 로고
    • The graphical representation of protein sequences based on the physicochemical properties and its applications
    • He P.A., Zhang Y.P., Yao Y.H., Tang Y.F., Nan X.Y. The graphical representation of protein sequences based on the physicochemical properties and its applications. J. Comput. Chem. 2010, 31:2136-2142.
    • (2010) J. Comput. Chem. , vol.31 , pp. 2136-2142
    • He, P.A.1    Zhang, Y.P.2    Yao, Y.H.3    Tang, Y.F.4    Nan, X.Y.5
  • 9
    • 0025340372 scopus 로고
    • Chaos game representation of gene structure
    • Jeffrey H.J. Chaos game representation of gene structure. Nucleic Acids Res. 1990, 18:2163-2170.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 2163-2170
    • Jeffrey, H.J.1
  • 10
    • 77958498251 scopus 로고    scopus 로고
    • A novel method for similarity analysis and protein sub-cellular localization prediction
    • Liao B., Liao B.Y., Sun X.M., Zeng Q.G. A novel method for similarity analysis and protein sub-cellular localization prediction. Bioinformatics 2010, 26:2678-2683.
    • (2010) Bioinformatics , vol.26 , pp. 2678-2683
    • Liao, B.1    Liao, B.Y.2    Sun, X.M.3    Zeng, Q.G.4
  • 11
    • 60349115403 scopus 로고    scopus 로고
    • 3-D maps and coupling numbers for protein sequences
    • Li C., Yu X.Q., Yang L., Zheng X.Q., Wang Z.F. 3-D maps and coupling numbers for protein sequences. Physica A. 2009, 388:1967-1972.
    • (2009) Physica A. , vol.388 , pp. 1967-1972
    • Li, C.1    Yu, X.Q.2    Yang, L.3    Zheng, X.Q.4    Wang, Z.F.5
  • 14
    • 33749518282 scopus 로고    scopus 로고
    • Mathematical descriptors of DNA sequences: development and applications
    • Nandy A., Harle M., Basak S.C. Mathematical descriptors of DNA sequences: development and applications. ARKIVOC 2006, 9:211-238.
    • (2006) ARKIVOC , vol.9 , pp. 211-238
    • Nandy, A.1    Harle, M.2    Basak, S.C.3
  • 16
    • 2442509138 scopus 로고    scopus 로고
    • 2-D graphical representation of proteins based on virtual genetic code,
    • Randic M. 2-D graphical representation of proteins based on virtual genetic code,. SAR QSAR Environ. Res. 2004, 15:147-157.
    • (2004) SAR QSAR Environ. Res. , vol.15 , pp. 147-157
    • Randic, M.1
  • 17
    • 7444235858 scopus 로고    scopus 로고
    • Unique graphical representation of protein sequences based on nucleotide triplet codons
    • Randic M., Zupan J., Balaban A.T. Unique graphical representation of protein sequences based on nucleotide triplet codons. Chem. Phys. Lett. 2004, 397:247-252.
    • (2004) Chem. Phys. Lett. , vol.397 , pp. 247-252
    • Randic, M.1    Zupan, J.2    Balaban, A.T.3
  • 18
    • 32344433839 scopus 로고    scopus 로고
    • Novel 2-D graphical representation of proteins
    • Randic M., Butina D., Zupan J. Novel 2-D graphical representation of proteins. Chem. Phys. Lett. 2006, 419:528-532.
    • (2006) Chem. Phys. Lett. , vol.419 , pp. 528-532
    • Randic, M.1    Butina, D.2    Zupan, J.3
  • 22
  • 23
    • 34248647897 scopus 로고    scopus 로고
    • 2-D graphical representation of proteins based on physico-chemical properties of amino acids
    • Randic M. 2-D graphical representation of proteins based on physico-chemical properties of amino acids. Chem. Phys. Lett. 2007, 440:291-295.
    • (2007) Chem. Phys. Lett. , vol.440 , pp. 291-295
    • Randic, M.1
  • 24
    • 44849106418 scopus 로고    scopus 로고
    • A construction of Gray codes inducing complete graphs
    • Suparata I., Van Zanten A. A construction of Gray codes inducing complete graphs. Discrete Math. 2008, 308:4124-4132.
    • (2008) Discrete Math. , vol.308 , pp. 4124-4132
    • Suparata, I.1    Van Zanten, A.2
  • 25
    • 0037342499 scopus 로고    scopus 로고
    • Alignment-free sequence comparison - a review
    • Vinga S., Almeida J. Alignment-free sequence comparison - a review. Bioinformatics 2003, 19:513-523.
    • (2003) Bioinformatics , vol.19 , pp. 513-523
    • Vinga, S.1    Almeida, J.2
  • 26
    • 71849120074 scopus 로고    scopus 로고
    • A 2D graphical representation of protein sequence and its numerical characterization
    • Wen J., Zhang Y.Y. A 2D graphical representation of protein sequence and its numerical characterization. Chem. Phys. Lett. 2009, 476:281-286.
    • (2009) Chem. Phys. Lett. , vol.476 , pp. 281-286
    • Wen, J.1    Zhang, Y.Y.2
  • 27
    • 77955673069 scopus 로고    scopus 로고
    • 2D-MH: a web-server for generating graphic representation of protein sequences based on the physicochemical properties of their constituent amino acids
    • Wu Z.C., Xiao X., Chou K.C. 2D-MH: a web-server for generating graphic representation of protein sequences based on the physicochemical properties of their constituent amino acids. J. Theor. Biol. 2010, 267:29-34.
    • (2010) J. Theor. Biol. , vol.267 , pp. 29-34
    • Wu, Z.C.1    Xiao, X.2    Chou, K.C.3
  • 28
    • 70349775502 scopus 로고    scopus 로고
    • Protein functional class prediction using global encoding of amino acid sequence
    • Xi L., Liao B., Zeng Q.G., Luo J.W. Protein functional class prediction using global encoding of amino acid sequence. J. Theor. Biol. 2009, 261:290-293.
    • (2009) J. Theor. Biol. , vol.261 , pp. 290-293
    • Xi, L.1    Liao, B.2    Zeng, Q.G.3    Luo, J.W.4
  • 29
    • 77953039087 scopus 로고    scopus 로고
    • Similarity/dissimilarity studies of protein sequences based on a new 2D graphical representation
    • Yao Y.H., Dai Q., Li L., Nan X.Y., He P.A., Zhang Y.Z. Similarity/dissimilarity studies of protein sequences based on a new 2D graphical representation. J. Comput. Chem. 2010, 31:1045-1052.
    • (2010) J. Comput. Chem. , vol.31 , pp. 1045-1052
    • Yao, Y.H.1    Dai, Q.2    Li, L.3    Nan, X.Y.4    He, P.A.5    Zhang, Y.Z.6
  • 30
    • 58149316600 scopus 로고    scopus 로고
    • Analysis of similarity/dissimilarity of protein sequences
    • Yao Y.H., Dai Q., Li C., He P.A., Nan X.Y., Zhang Y.Z. Analysis of similarity/dissimilarity of protein sequences. Proteins 2008, 73:864-871.
    • (2008) Proteins , vol.73 , pp. 864-871
    • Yao, Y.H.1    Dai, Q.2    Li, C.3    He, P.A.4    Nan, X.Y.5    Zhang, Y.Z.6
  • 31
    • 43249097631 scopus 로고    scopus 로고
    • A protein map and its application
    • Yau S.S.T., Yu C.L., He R. A protein map and its application. DNA Cell Biol. 2008, 27:241-250.
    • (2008) DNA Cell Biol. , vol.27 , pp. 241-250
    • Yau, S.S.T.1    Yu, C.L.2    He, R.3
  • 32
    • 67349230921 scopus 로고    scopus 로고
    • A novel representation for apoptosis protein subcellular localization prediction using support vector machine
    • Zhang L., Liao B., Li D.C., Zhu W. A novel representation for apoptosis protein subcellular localization prediction using support vector machine. J. Theor. Biol. 2009, 259:361-365.
    • (2009) J. Theor. Biol. , vol.259 , pp. 361-365
    • Zhang, L.1    Liao, B.2    Li, D.C.3    Zhu, W.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.