Amino acid principal component analysis (aapca) and its applications in protein structural class prediction

Journal of Biomolecular Structure and Dynamics

Volumn 23, Issue 6, 2006, Pages 635-640

  Du, Qi Shi ^a,b   Jiang, Zhi Qin ^b   He, Wen Zhang ^a   Li, Da Peng ^b   Chou, Kou Chen ^c  

^a TIANJIN UNIVERSITY OF TECHNOLOGY AND EDUCATION   (China)

^b TIANJIN NORMAL UNIVERSITY   (China)

^c GORDON LIFE SCIENCE INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID;

AMINO ACID ANALYSIS; AMINO ACID COMPOSITION; AMINO ACID PRINCIPAL COMPONENT ANALYSIS; ARTICLE; COMPUTER PREDICTION; MATHEMATICAL MODEL; PRINCIPAL COMPONENT ANALYSIS; PRIORITY JOURNAL; PROTEIN STRUCTURE; RANDOM ERROR; THEORETICAL MODEL;

EID: 33646568767     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.2006.10507088     Document Type: Article

References (38)

1. Chou, K. C., 2004. Current Medicinal Chemistry, 11:2105–2134.
2. Chou, K. C., 2000. Analytical Biochemistry, 286:1–16.
3. Chou, K. C., and Cai, Y. D., 2003. PROTEINS:Structure, Function, and Genetics, 53:282–289.
4. Chou, K. C., 2000. Current Protein and Peptide Science, 1:171–208.
5. Chou, K. C., 2005. Current Protein and Peptide Science, 6:423–436.
6. Nakashima, H., Nishikawa, K., and Ooi, T., 1986. J. Biochem, 99:152–162.
7. Chou, K. C., and Zhang, C. T., 1994. Journal of Biological Chemistry, 269:22014–22020.
8. Malinowski, E. R., and Howery, D. G., 1980. Factor Analysis in Chemistry. New York:Wiley.
9. Deming, S. N., 1986. Clin Chem, 32:1702–1706.
10. Chou, K. C., 1999. Biochemical and Biophysical Research Communications, 264:216–224.
11. Chou, K. C., 1995. Proteins:Structure, Function & Genetics, 21:319–344.
12. Zhou, G. P., 1998. Journal of Protein Chemistry, 17:729–738.
13. Zhou, G. P., and Assa-Munt, N., 2001. PROTEINS:Structure, Function, and Genetics, 44:57–59.
14. Zhou, G. P., and Doctor, K., 2003. PROTEINS:Structure, Function, and Genetics, 50:44–48.
15. Pan, Y. X., Zhang, Z. Z., Guo, Z. M., Feng, G. Y., Huang, Z. D., and He, L., 2003. Journal of Protein Chemistry, 22:395–402.
16. Chou, K. C., and Zhang, C. T., 1995. Critical Reviews in Biochemistry and Molecular Biology, 30:275–349.
17. Zhang, C. T., and Chou, K. C., 1995. Journal of Protein Chemistry, 14:309–326.
18. Liu, W., and Chou, K. C., 1998. Journal of Protein Chemistry, 17:209–217.
19. Feng, Z. P., 2002. In Silico Biol., 2:291–303.
20. Wang, M., Yang, J., Liu, G. P., Xu, Z. J., and Chou, K. C., 2004. Protein Engineering, Design, and Selection, 17:509–516.
21. Wang, M., Yang, J., Xu, Z. J., and Chou, K. C., 2005. Journal of Theoretical Biology, 232:7–15.
22. Xiao, X., Shao, S., Ding, Y., Huang, Z., Huang, Y., and Chou, K. C., 2005. Amino Acids, 28:57–61.
23. Xiao, X., Shao, S. H., Ding, Y. S., Huang, Z. D., and Chou, K. C., 2005. Amino Acids, Online first., DOI 10.1007/s00726-005-0225-6
24. Gao, Y., Shao, S. H., Xiao, X., Ding, Y. S., Huang, Y. S., Huang, Z. D., and Chou, K. C., 2005. Amino Acids, 28:373–376.
25. Shen, H. B., Yang, J., Liu, X. J., and Chou, K. C., 2005. Biochem. Biophys. Res. Commun., 334:577–581.
26. Shen, H. B., and Chou, K. C., 2005. Biochemical & Biophysical Research Communications, 334:288–292.
27. Liu, H., Wang, M., and Chou, K. C., 2005. Biochem Biophys Res Commun, 336:737–739.
28. Chou, K. C., 2005. Journal of Proteome Research, 4:1413–1418.
29. Chou, P. Y., 1989. Prediction of Protein Structure and the Principles of Protein Conformation Edited by:Fasman. 549–586. New York:G. D. Plenum Press.
30. Chou, K. C., and Elrod, D. W., 1999. Protein Engineering, 12:107–118.
31. Cedano, J., Aloy, P., P'erez-Pons, J. A., and Querol, E., 1997. J. Mol. Biol, 266:594–600.
32. Chou, K. C., and Cai, Y. D., 2005. Bioinformatics, 21:944–950.
33. Chou, K. C., and Cai, Y. D., 2002. Journal of Biological Chemistry, 277:45765–45769.
34. Shen, H. B., and Chou, K. C., 2005. Biochem. Biophys. Res. Comm., 337:752–756.
35. Chou, K. C., and Elrod, D. W., 1999. PROTEINS:Structure, Function, and Genetics, 34:137–153.
36. Chou, K. C., and Cai, Y. D., 2004. Protein Science, 13:2857–2863.
37. Chou, K. C., and Cai, Y. D., 2004. Biochemical and Biophysical Research Communications, 325:506–509.
38. Chou, K. C., and Cai, Y. D., 2006. Biochem. Biophys. Res. Comm., 339:1015–1020.