메뉴 건너뛰기




Volumn 25, Issue 9, 2009, Pages 1112-1117

DV-Curve: A novel intuitive tool for visualizing and analyzing DNA sequences

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER GRAPHICS; CONTROLLED STUDY; DNA SEQUENCE; MATHEMATICAL ANALYSIS; MUTATIONAL ANALYSIS; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY;

EID: 65449167165     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp130     Document Type: Article
Times cited : (53)

References (20)
  • 1
    • 17844404533 scopus 로고    scopus 로고
    • Novel 4D numerical representation of DNA sequences
    • Chi,R. and Ding,K. (2005) Novel 4D numerical representation of DNA sequences. Chem. Phys. Lett., 407, 63-67.
    • (2005) Chem. Phys. Lett , vol.407 , pp. 63-67
    • Chi, R.1    Ding, K.2
  • 2
    • 0000678497 scopus 로고    scopus 로고
    • A novel 2-D graphical representation of DNA sequences of low degeneracy
    • Guo,X. et al. (2001) A novel 2-D graphical representation of DNA sequences of low degeneracy. Chem.Phys. Lett., 350, 106-112.
    • (2001) Chem.Phys. Lett , vol.350 , pp. 106-112
    • Guo, X.1
  • 3
    • 0024340861 scopus 로고
    • Graphic representation of long DNA sequences by the method of H curves-current results and future aspects
    • Hamori,E. (1989) Graphic representation of long DNA sequences by the method of H curves-current results and future aspects. BioTechniques 7, 710-720.
    • (1989) BioTechniques , vol.7 , pp. 710-720
    • Hamori, E.1
  • 4
    • 0020659327 scopus 로고
    • H curves, a novel method of representation of nucleotide series especially suited for long DNA sequences
    • Hamori,E. and Ruskin,J. (1983) H curves, a novel method of representation of nucleotide series especially suited for long DNA sequences. J. Biol. Chem., 258, 1318-1327.
    • (1983) J. Biol. Chem , vol.258 , pp. 1318-1327
    • Hamori, E.1    Ruskin, J.2
  • 5
    • 49649087115 scopus 로고    scopus 로고
    • H-L curve: A novel 2D graphical representation for DNA sequences
    • Huang,G.H. et al. (2008) H-L curve: A novel 2D graphical representation for DNA sequences. Chem. Phys. Lett., 462, 129-132.
    • (2008) Chem. Phys. Lett , vol.462 , pp. 129-132
    • Huang, G.H.1
  • 6
    • 0025340372 scopus 로고
    • Chaos game representation of gene structure
    • Jeffrey,H.J. (1990) Chaos game representation of gene structure. Nucleic Acids Res., 18, 2163-2170.
    • (1990) Nucleic Acids Res , vol.18 , pp. 2163-2170
    • Jeffrey, H.J.1
  • 7
    • 5444223083 scopus 로고    scopus 로고
    • Analysis of similarity/dissimilarity of DNA sequences based on nonoverlapping triplets of nucleotide bases
    • Liao,B. and Wang,T.M. (2004) Analysis of similarity/dissimilarity of DNA sequences based on nonoverlapping triplets of nucleotide bases. J. Chem. Inf. Comput. Sci., 44, 1666-1670.
    • (2004) J. Chem. Inf. Comput. Sci , vol.44 , pp. 1666-1670
    • Liao, B.1    Wang, T.M.2
  • 8
    • 25844481569 scopus 로고    scopus 로고
    • Application of 2-D graphical representation of DNA sequence
    • Liao,B. et al. (2005) Application of 2-D graphical representation of DNA sequence. Chem. Phys. Lett., 414, 296-300.
    • (2005) Chem. Phys. Lett , vol.414 , pp. 296-300
    • Liao, B.1
  • 9
    • 0000347441 scopus 로고
    • A new graphical representation and analysis of DNA sequence structure. I: Methodology and application to globin genes
    • Nandy,A. (1994) A new graphical representation and analysis of DNA sequence structure. I: Methodology and application to globin genes. Curr. Sci., 66, 309-314.
    • (1994) Curr. Sci , vol.66 , pp. 309-314
    • Nandy, A.1
  • 10
    • 34347358494 scopus 로고    scopus 로고
    • PN-curve: A 3D graphical representation of DNA sequences and their numerical characterization
    • Qi,Z.H. and Fan,T.R. (2007) PN-curve: A 3D graphical representation of DNA sequences and their numerical characterization. Chem. Phys. Lett. 442, 434-440.
    • (2007) Chem. Phys. Lett , vol.442 , pp. 434-440
    • Qi, Z.H.1    Fan, T.R.2
  • 11
    • 34247869892 scopus 로고    scopus 로고
    • Novel 2D graphical representation of DNA sequence based on dual nucleotides
    • Qi,Z.H and Qi,X.Q. (2007) Novel 2D graphical representation of DNA sequence based on dual nucleotides. Chem. Phys. Lett., 440, 139-144.
    • (2007) Chem. Phys. Lett , vol.440 , pp. 139-144
    • Qi, Z.H.1    Qi, X.Q.2
  • 12
    • 36249019849 scopus 로고    scopus 로고
    • New 3D graphical representation of DNA sequence based on dual nucleotides
    • Qi,X. et al. (2007) New 3D graphical representation of DNA sequence based on dual nucleotides. J. Theor. Biol., 249, 681-690.
    • (2007) J. Theor. Biol , vol.249 , pp. 681-690
    • Qi, X.1
  • 13
    • 0037435485 scopus 로고    scopus 로고
    • Novel 2-D graphical representation of DNA sequences and their numerical characterization
    • Randić,M. et al. (2003a) Novel 2-D graphical representation of DNA sequences and their numerical characterization. Chem. Phys. Lett. 368, 1-6.
    • (2003) Chem. Phys. Lett , vol.368 , pp. 1-6
    • Randić, M.1
  • 14
    • 0037470662 scopus 로고    scopus 로고
    • Analysis of similarity/dissimilarity of DNA sequences based on novel 2-D graphical representation
    • Randić,M. et al. (2003b) Analysis of similarity/dissimilarity of DNA sequences based on novel 2-D graphical representation. Chem. Phys. Lett., 371, 202-207.
    • (2003) Chem. Phys. Lett , vol.371 , pp. 202-207
    • Randić, M.1
  • 15
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith,T.F. and Waterman,M.S. (1981) Identification of common molecular subsequences. J. Mol. Biol., 147, 195-197.
    • (1981) J. Mol. Biol , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 16
    • 0028679709 scopus 로고
    • On the complexity of multiple sequence alignment
    • Wang,L. and Jiang,T. (1994) On the complexity of multiple sequence alignment. J. Comput. Biol., 1, 337-348.
    • (1994) J. Comput. Biol , vol.1 , pp. 337-348
    • Wang, L.1    Jiang, T.2
  • 17
    • 0037413312 scopus 로고    scopus 로고
    • DB-Curve: A novel 2D method of DNA sequence visualization and representation
    • Wu,Y. et al. (2003) DB-Curve: A novel 2D method of DNA sequence visualization and representation. Chem. Phys. Lett., 367, 170-176.
    • (2003) Chem. Phys. Lett , vol.367 , pp. 170-176
    • Wu, Y.1
  • 18
    • 7044263264 scopus 로고    scopus 로고
    • A class of new 2-D graphical representation of DNA sequences and their application
    • Yao,Y.H. and Wang,T.M. (2004) A class of new 2-D graphical representation of DNA sequences and their application. Chem. Phys. Lett., 398, 318-323.
    • (2004) Chem. Phys. Lett , vol.398 , pp. 318-323
    • Yao, Y.H.1    Wang, T.M.2
  • 19
    • 0027995001 scopus 로고
    • Z curves, an intuitive tool for visualizing and analyzing DNA sequences
    • Zhang,R. and Zhang,C.T. (1994) Z curves, an intuitive tool for visualizing and analyzing DNA sequences. J. Biomol. Struct. Dyn., 11, 767-782.
    • (1994) J. Biomol. Struct. Dyn , vol.11 , pp. 767-782
    • Zhang, R.1    Zhang, C.T.2
  • 20
    • 0037460960 scopus 로고    scopus 로고
    • The Z curve database: A graphic representation of genome sequences
    • Zhang,C.T. et al. (2003) The Z curve database: A graphic representation of genome sequences. Bioinformatics, 19, 593-599.
    • (2003) Bioinformatics , vol.19 , pp. 593-599
    • Zhang, C.T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.