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Volumn 47, Issue 12, 2014, Pages 3522-3529

Redox potentials and acidity constants from density functional theory based molecular dynamics

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EID: 84918514958     PISSN: 00014842     EISSN: 15204898     Source Type: Journal    
DOI: 10.1021/ar500268y     Document Type: Article
Times cited : (213)

References (43)
  • 1
    • 84961980477 scopus 로고    scopus 로고
    • Quantum Mechanical Continuum Solvation Models
    • Tomasi, J.; Mennucci, B.; Cammi, R. Quantum Mechanical Continuum Solvation Models. Chem. Rev. 2005, 105, 2999-3094.
    • (2005) Chem. Rev. , vol.105 , pp. 2999-3094
    • Tomasi, J.1    Mennucci, B.2    Cammi, R.3
  • 2
    • 84982207902 scopus 로고    scopus 로고
    • Computational Electrochemistry: Prediction of Liquid-Phase Reduction Potentials
    • Marenich, A. V.; Ho, J.; Coote, M. L.; Cramer, C. J.; Truhlar, D. G. Computational Electrochemistry: Prediction of Liquid-Phase Reduction Potentials. Phys. Chem. Chem. Phys. 2014, 16, 15068-15106 DOI: 10.1039/c4cp01572j.
    • (2014) Phys. Chem. Chem. Phys. , vol.16 , pp. 15068-15106
    • Marenich, A.V.1    Ho, J.2    Coote, M.L.3    Cramer, C.J.4    Truhlar, D.G.5
  • 4
    • 62149122220 scopus 로고    scopus 로고
    • Progress in Ab Initio QM/MM Free-Energy Simulations of Electrostatic Energies in Proteins: Accelerated QM/MM Studies of pKa, Redox Reactions and Solvation Free Energies
    • Kamerlin, S. C. L.; Haranczyk, M.; Warshel, A. Progress in Ab Initio QM/MM Free-Energy Simulations of Electrostatic Energies in Proteins: Accelerated QM/MM Studies of pKa, Redox Reactions and Solvation Free Energies. J. Phys. Chem. B 2009, 113, 1253-1272.
    • (2009) J. Phys. Chem. B , vol.113 , pp. 1253-1272
    • Kamerlin, S.C.L.1    Haranczyk, M.2    Warshel, A.3
  • 5
    • 84863172978 scopus 로고    scopus 로고
    • A Polarizable QM/MM Explicit Solvent Model for Computational Electrochemistry in Water
    • Wang, L.-P.; Van Voorhis, T. A Polarizable QM/MM Explicit Solvent Model for Computational Electrochemistry in Water. J. Chem. Theor. Comput. 2012, 8, 610-617.
    • (2012) J. Chem. Theor. Comput. , vol.8 , pp. 610-617
    • Wang, L.-P.1    Van Voorhis, T.2
  • 6
    • 15344345714 scopus 로고    scopus 로고
    • Quickstep: Fast and Accurate Density Functional Calculations Using a Mixed Gaussian and Plane Waves Approach
    • VandeVondele, J.; Krack, M.; Mohamed, F.; Parrinello, M.; Chassaing, T.; Hutter, J. Quickstep: Fast and Accurate Density Functional Calculations Using a Mixed Gaussian and Plane Waves Approach. Comput. Phys. Commun. 2005, 167, 103-128.
    • (2005) Comput. Phys. Commun. , vol.167 , pp. 103-128
    • VandeVondele, J.1    Krack, M.2    Mohamed, F.3    Parrinello, M.4    Chassaing, T.5    Hutter, J.6
  • 8
    • 0000354626 scopus 로고
    • Investigation of the Free Energy Functions for Electron Transfer Reactions
    • King, G.; Warshel, A. Investigation of the Free Energy Functions for Electron Transfer Reactions. J. Chem. Phys. 1990, 93, 8682-8692.
    • (1990) J. Chem. Phys. , vol.93 , pp. 8682-8692
    • King, G.1    Warshel, A.2
  • 10
    • 50849095461 scopus 로고    scopus 로고
    • Acidity Constants from Vertical Energy Gaps: Density Functional Theory Based Molecular Dynamics Implementation
    • Sulpizi, M.; Sprik, M. Acidity Constants from Vertical Energy Gaps: Density Functional Theory Based Molecular Dynamics Implementation. Phys. Chem. Chem. Phys. 2008, 10, 5238-5249.
    • (2008) Phys. Chem. Chem. Phys. , vol.10 , pp. 5238-5249
    • Sulpizi, M.1    Sprik, M.2
  • 11
    • 70449346591 scopus 로고    scopus 로고
    • Redox Potentials and pKa for Benzoquinone from Density Functional Theory Based Molecular Dynamics
    • No. 154504
    • Cheng, J.; Sulpizi, M.; Sprik, M. Redox Potentials and pKa for Benzoquinone from Density Functional Theory Based Molecular Dynamics. J. Chem. Phys. 2009, 131, No. 154504.
    • (2009) J. Chem. Phys. , vol.131
    • Cheng, J.1    Sulpizi, M.2    Sprik, M.3
  • 12
    • 79960155098 scopus 로고    scopus 로고
    • The Oxidation of Tyrosine and Tryptophan Studied by a Molecular Dynamics Normal Hydrogen Electrode
    • No. 244508
    • Costanzo, F.; Della Valle, R. G.; Sulpizi, M.; Sprik, M. The Oxidation of Tyrosine and Tryptophan Studied by a Molecular Dynamics Normal Hydrogen Electrode. J. Chem. Phys. 2011, 134, No. 244508.
    • (2011) J. Chem. Phys. , vol.134
    • Costanzo, F.1    Della Valle, R.G.2    Sulpizi, M.3    Sprik, M.4
  • 14
    • 77955964429 scopus 로고    scopus 로고
    • Acidity Constants from DFT-Based Molecular Dynamics Simulations
    • No. 284116
    • Sulpizi, M.; Sprik, M. Acidity Constants from DFT-Based Molecular Dynamics Simulations. J. Phys.: Condens. Matter 2010, 22, No. 284116.
    • (2010) J. Phys.: Condens. Matter , vol.22
    • Sulpizi, M.1    Sprik, M.2
  • 15
    • 79959254386 scopus 로고    scopus 로고
    • Absolute pKa Values and Solvation Structure of Amino Acids from Density Functional Based Molecular Dynamics Simulation
    • Mangold, M.; Rolland, L.; Costanzo, F.; Sprik, M.; Sulpizi, M.; Blumberger, J. Absolute pKa Values and Solvation Structure of Amino Acids from Density Functional Based Molecular Dynamics Simulation. J. Chem. Theor. Comput. 2011, 7, 1951-1961.
    • (2011) J. Chem. Theor. Comput. , vol.7 , pp. 1951-1961
    • Mangold, M.1    Rolland, L.2    Costanzo, F.3    Sprik, M.4    Sulpizi, M.5    Blumberger, J.6
  • 16
    • 84874937037 scopus 로고    scopus 로고
    • Hydration, Acidity and Metal Complexing of Polysulfide Species: A First Principles Molecular Dynamics Study
    • Liu, X.; Sprik, M.; Cheng, J. Hydration, Acidity and Metal Complexing of Polysulfide Species: A First Principles Molecular Dynamics Study. Chem. Phys. Lett. 2013, 563, 9-14.
    • (2013) Chem. Phys. Lett. , vol.563 , pp. 9-14
    • Liu, X.1    Sprik, M.2    Cheng, J.3
  • 17
    • 84883824726 scopus 로고    scopus 로고
    • Solution Structures and Acidity Constants of Molybdic Acid
    • Liu, X.; Cheng, J.; Sprik, M.; Lu, X. Solution Structures and Acidity Constants of Molybdic Acid. J. Phys. Chem. Lett. 2013, 4, 2926-2930.
    • (2013) J. Phys. Chem. Lett. , vol.4 , pp. 2926-2930
    • Liu, X.1    Cheng, J.2    Sprik, M.3    Lu, X.4
  • 18
    • 77950145607 scopus 로고    scopus 로고
    • 2(110) Surface from Density Functional Theory Based Molecular Dynamics
    • 2(110) Surface from Density Functional Theory Based Molecular Dynamics. J. Chem. Theor. Comput. 2010, 6, 880-889.
    • (2010) J. Chem. Theor. Comput. , vol.6 , pp. 880-889
    • Cheng, J.1    Sprik, M.2
  • 20
    • 84864213619 scopus 로고    scopus 로고
    • Alignment of Electronic Energy Levels at Electrochemical Interfaces
    • Cheng, J.; Sprik, M. Alignment of Electronic Energy Levels at Electrochemical Interfaces. Phys. Chem. Chem. Phys. 2012, 14, 11245-11267.
    • (2012) Phys. Chem. Chem. Phys. , vol.14 , pp. 11245-11267
    • Cheng, J.1    Sprik, M.2
  • 22
    • 84858311954 scopus 로고    scopus 로고
    • The Silica-Water Interface: How the Silanols Determine the Surface Acidity and Modulate the Water Properties
    • Sulpizi, M.; Gaigeot, M.-P.; Sprik, M. The Silica-Water Interface: How the Silanols Determine the Surface Acidity and Modulate the Water Properties. J. Chem. Theor. Comput. 2012, 8, 137-147.
    • (2012) J. Chem. Theor. Comput. , vol.8 , pp. 137-147
    • Sulpizi, M.1    Gaigeot, M.-P.2    Sprik, M.3
  • 24
    • 84882990284 scopus 로고    scopus 로고
    • Understanding Surface Acidity of Gibbsite with First Principles Molecular Dynamics Simulations
    • Liu, X.; Cheng, J.; Sprik, M.; Lu, X.; Wang, R. Understanding Surface Acidity of Gibbsite with First Principles Molecular Dynamics Simulations. Geochim. Cosmochim. Acta 2013, 120, 487-495.
    • (2013) Geochim. Cosmochim. Acta , vol.120 , pp. 487-495
    • Liu, X.1    Cheng, J.2    Sprik, M.3    Lu, X.4    Wang, R.5
  • 26
    • 41949121296 scopus 로고    scopus 로고
    • Localization and Delocalization Errors in Density Functional Theory and Implications for Band-Gap Prediction
    • No. 146401
    • Mori-Sánchez, P.; Cohen, A. J.; Yang, W. Localization and Delocalization Errors in Density Functional Theory and Implications for Band-Gap Prediction. Phys. Rev. Lett. 2008, 100, No. 146401.
    • (2008) Phys. Rev. Lett. , vol.100
    • Mori-Sánchez, P.1    Cohen, A.J.2    Yang, W.3
  • 27
    • 77955562106 scopus 로고    scopus 로고
    • Auxiliary Density Matrix Methods for Hartree-Fock Exchange Correlations
    • Guidon, M.; Hutter, J.; VandeVondele, J. Auxiliary Density Matrix Methods for Hartree-Fock Exchange Correlations. J. Chem. Theor. Comput. 2010, 6, 2348-2364.
    • (2010) J. Chem. Theor. Comput. , vol.6 , pp. 2348-2364
    • Guidon, M.1    Hutter, J.2    VandeVondele, J.3
  • 28
    • 0000934120 scopus 로고
    • The Energy and Elastic Dipole Tensor of Defects in Ionic Crystals Calculated by the Supercell Method
    • Leslie, M.; Gillan, M. J. The Energy and Elastic Dipole Tensor of Defects in Ionic Crystals Calculated by the Supercell Method. J. Phys.: Condens. Matter 1985, 18, 973.
    • (1985) J. Phys.: Condens. Matter , vol.18 , pp. 973
    • Leslie, M.1    Gillan, M.J.2
  • 30
    • 84904131114 scopus 로고    scopus 로고
    • An Overview of Electrostatic Free Energy Computations for Solutions and Proteins
    • Lin, Y.-L.; Aleksandrov, A.; Simonson, T.; Roux, B. An Overview of Electrostatic Free Energy Computations for Solutions and Proteins. J. Chem. Theor. Comput. 2014, 10, 2690-2709.
    • (2014) J. Chem. Theor. Comput. , vol.10 , pp. 2690-2709
    • Lin, Y.-L.1    Aleksandrov, A.2    Simonson, T.3    Roux, B.4
  • 32
    • 84863833798 scopus 로고    scopus 로고
    • Finite-size Supercell Correction Schemes for Charged Defect Calculations
    • No. 045112
    • Komsa, H.-P.; Rantala, T. T.; Pasquarello, A. Finite-size Supercell Correction Schemes for Charged Defect Calculations. Phys. Rev. B 2012, 86, No. 045112.
    • (2012) Phys. Rev. B , vol.86
    • Komsa, H.-P.1    Rantala, T.T.2    Pasquarello, A.3
  • 33
    • 38749135480 scopus 로고    scopus 로고
    • A Classical Point Charge Model Study of System Size Dependence of Oxidation and Reorganization Free Energies in Aqueous Solution
    • Ayala, R.; Sprik, M. A Classical Point Charge Model Study of System Size Dependence of Oxidation and Reorganization Free Energies in Aqueous Solution. J. Phys. Chem. B 2008, 112, 257-269.
    • (2008) J. Phys. Chem. B , vol.112 , pp. 257-269
    • Ayala, R.1    Sprik, M.2
  • 34
    • 84897696249 scopus 로고    scopus 로고
    • Probing the Electronic Structure of Water with Many-Body Perturbation Theory
    • No. 060202(R)
    • Pham, T. A.; Zhang, C.; Schwegler, E.; Galli, G. Probing the Electronic Structure of Water with Many-Body Perturbation Theory. Phys. Rev. B 2014, 89, No. 060202(R).
    • (2014) Phys. Rev. B , vol.89
    • Pham, T.A.1    Zhang, C.2    Schwegler, E.3    Galli, G.4
  • 35
    • 0022752527 scopus 로고
    • The Absolute Electrode Potential: An Explanatory Note
    • Trasatti, S. The Absolute Electrode Potential: An Explanatory Note. Pure Appl. Chem. 1986, 58, 955-966.
    • (1986) Pure Appl. Chem. , vol.58 , pp. 955-966
    • Trasatti, S.1
  • 36
    • 78650626762 scopus 로고    scopus 로고
    • Thermochemistry of Proton-Coupled Electron Transfer Reagents and its Implications
    • Warren, J. J.; Tronic, T. A.; Mayer, J. M. Thermochemistry of Proton-Coupled Electron Transfer Reagents and its Implications. Chem. Rev. 2010, 110, 6961-7001.
    • (2010) Chem. Rev. , vol.110 , pp. 6961-7001
    • Warren, J.J.1    Tronic, T.A.2    Mayer, J.M.3
  • 37
    • 78651286417 scopus 로고    scopus 로고
    • Defect Levels through Hybrid Density Functionals: Insights and Applications
    • Alkauskas, A.; Broqvist, P.; Pasquarello, A. Defect Levels through Hybrid Density Functionals: Insights and Applications. Phys. Status Solidi B 2011, 248, 775-789.
    • (2011) Phys. Status Solidi B , vol.248 , pp. 775-789
    • Alkauskas, A.1    Broqvist, P.2    Pasquarello, A.3
  • 39
    • 33845518500 scopus 로고    scopus 로고
    • Influence of the Exchange Screening Parameter on the Performance of Screened Hybrid Functionals
    • No. 224106
    • Krukau, A. V.; Vydrov, O. A.; Izmaylov, A. F.; Scuseria, G. E. Influence of the Exchange Screening Parameter on the Performance of Screened Hybrid Functionals. J. Chem. Phys. 2006, 125, No. 224106.
    • (2006) J. Chem. Phys. , vol.125
    • Krukau, A.V.1    Vydrov, O.A.2    Izmaylov, A.F.3    Scuseria, G.E.4
  • 40
    • 0001322105 scopus 로고    scopus 로고
    • Rationale for Mixing Exact Exchange with Density Functional Approximations
    • Perdew, J. P.; Ernzerhof, M.; Burke, K. Rationale for Mixing Exact Exchange with Density Functional Approximations. J. Chem. Phys. 1996, 105, 9982-9985.
    • (1996) J. Chem. Phys. , vol.105 , pp. 9982-9985
    • Perdew, J.P.1    Ernzerhof, M.2    Burke, K.3
  • 41
    • 84904639696 scopus 로고    scopus 로고
    • The Ionization Potential of Aqueous Hydroxide Computed Using Many-Body Perturbation Theory
    • No. 034501
    • Opalka, D.; Pham, T.; Sprik, M.; Galli, G. The Ionization Potential of Aqueous Hydroxide Computed Using Many-Body Perturbation Theory. J. Chem. Phys. 2014, 141, No. 034501.
    • (2014) J. Chem. Phys. , vol.141
    • Opalka, D.1    Pham, T.2    Sprik, M.3    Galli, G.4
  • 42
    • 84887797284 scopus 로고    scopus 로고
    • Bulk Liquid Water at Ambient Temperature and Pressure from MP2 Theory
    • Del Ben, M.; Schönherr, M.; Hutter, J.; VandeVondele, J. Bulk Liquid Water at Ambient Temperature and Pressure from MP2 Theory. J. Phys. Chem. Lett. 2013, 4, 3753-3759.
    • (2013) J. Phys. Chem. Lett. , vol.4 , pp. 3753-3759
    • Del Ben, M.1    Schönherr, M.2    Hutter, J.3    VandeVondele, J.4
  • 43
    • 84879100373 scopus 로고    scopus 로고
    • Electron Correlation in the Condensed Phase from a Resolution of Identity Approach Based on the Gaussian and Plane waves Scheme
    • Del Ben, M.; Hutter, J.; VandeVondele, J. Electron Correlation in the Condensed Phase from a Resolution of Identity Approach Based on the Gaussian and Plane waves Scheme. J. Chem. Theor. Comput. 2013, 9, 2654-2671.
    • (2013) J. Chem. Theor. Comput. , vol.9 , pp. 2654-2671
    • Del Ben, M.1    Hutter, J.2    VandeVondele, J.3


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