bPeaks: A bioinformatics tool to detect transcription factor binding sites from ChIPseq data in yeasts and other organisms with small genomes

Yeast

Volumn 31, Issue 10, 2014, Pages 375-391

  Merhej, Jawad ^a,b   Frigo, Amandine ^c   Le Crom, Stéphane ^a,c,d   Camadro, Jean Michel ^e   Devaux, Frédéric ^a,b   Lelandais, Gaëlle ^e  

^a SORBONNE UNIVERSITÉ   (France)

^b UMR 7238   (France)

^c ECOLE NORMALE SUPÉRIEURE   (France)

^d Sorbonne Universités   (France)

^e INSTITUT JACQUES MONOD   (France)

Author keywords

Bioinformatics; ChIPseq; Peak calling; Regulatory motifs; Transcription factors; Yeasts

Indexed keywords

TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR CGAP1P; TRANSCRIPTION FACTOR PDR1P; TRANSCRIPTION FACTOR SFL1P; UNCLASSIFIED DRUG; FUNGAL PROTEIN; PROTEIN BINDING;

ARTICLE; BINDING SITE; BIOINFORMATICS; CANDIDA ALBICANS; CANDIDA GLABRATA; CHROMATIN IMMUNOPRECIPITATION; CONSENSUS SEQUENCE; CONTROLLED STUDY; DNA BINDING; DNA SEQUENCE; GENOME; NONHUMAN; PROMOTER REGION; SACCHAROMYCES CEREVISIAE; SOFTWARE; YEAST; ALGORITHM; BIOLOGY; CANDIDA; DNA MICROARRAY; FUNGAL GENOME; GENETICS; HIGH THROUGHPUT SEQUENCING; METABOLISM; PROCEDURES;

CANDIDA ALBICANS; CANDIDA GLABRATA; EUKARYOTA; SACCHAROMYCES CEREVISIAE;

ALGORITHMS; BINDING SITES; CANDIDA; CANDIDA ALBICANS; COMPUTATIONAL BIOLOGY; FUNGAL PROTEINS; GENOME, FUNGAL; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROTEIN BINDING; SACCHAROMYCES CEREVISIAE; SEQUENCE ANALYSIS, DNA; TRANSCRIPTION FACTORS;

EID: 84916891441     PISSN: 0749503X     EISSN: 10970061     Source Type: Journal    
DOI: 10.1002/yea.3031     Document Type: Article

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