TIP: A probabilistic method for identifying transcription factor target genes from ChiP-seq binding profiles

Bioinformatics

Volumn 27, Issue 23, 2011, Pages 3221-3227

  Cheng, Chao ^a   Min, Renqiang ^a   Gerstein, Mark ^a,b  

^a YALE UNIVERSITY   (United States)

^b Yale University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ESTROGEN RECEPTOR ALPHA; STAT4 PROTEIN; STAT4 PROTEIN, MOUSE; TRANSCRIPTION FACTOR;

ANIMAL; ARTICLE; BINDING SITE; CHEMISTRY; CHROMATIN IMMUNOPRECIPITATION; DNA MICROARRAY; DNA SEQUENCE; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MOUSE; PROTEIN BINDING; PROTEIN MOTIF; STATISTICAL MODEL; TRANSCRIPTION INITIATION SITE;

AMINO ACID MOTIFS; ANIMALS; BINDING SITES; CHROMATIN IMMUNOPRECIPITATION; ESTROGEN RECEPTOR ALPHA; GENE EXPRESSION REGULATION; MICE; MODELS, STATISTICAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROTEIN BINDING; SEQUENCE ANALYSIS, DNA; STAT4 TRANSCRIPTION FACTOR; TRANSCRIPTION FACTORS; TRANSCRIPTION INITIATION SITE;

EID: 82255194271     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr552     Document Type: Article

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