메뉴 건너뛰기




Volumn 62, Issue 49, 2014, Pages 12067-12074

Small RNA profiles from virus-infected fresh market vegetables

Author keywords

genetic engineering; iris yellow spot virus (IYSV); miRNA; Ppotato virus Y (PVY); RNA silencing; RNAi; siRNA; small RNA; tomato spotted wilt virus (TSWV); vegetable; watermelon mosaic virus (WMV)

Indexed keywords

CROPS; FRUITS; GENETIC ENGINEERING; PLANTS (BOTANY); RNA; VEGETABLES;

EID: 84916613024     PISSN: 00218561     EISSN: 15205118     Source Type: Journal    
DOI: 10.1021/jf503756v     Document Type: Article
Times cited : (9)

References (37)
  • 1
    • 0037062951 scopus 로고    scopus 로고
    • RNA interference
    • Hannon, G. J. RNA interference Nature 2002, 418, 244-251
    • (2002) Nature , vol.418 , pp. 244-251
    • Hannon, G.J.1
  • 2
    • 4644242349 scopus 로고    scopus 로고
    • RNA silencing in plants
    • Baulcombe, D. RNA silencing in plants Nature 2004, 431, 356-33
    • (2004) Nature , vol.431 , pp. 356-433
    • Baulcombe, D.1
  • 3
    • 4644336023 scopus 로고    scopus 로고
    • Revealing the world of RNA interference
    • Mello, C. C.; Conte, D., Jr. Revealing the world of RNA interference Nature 2004, 431, 338-342
    • (2004) Nature , vol.431 , pp. 338-342
    • Mello, C.C.1    Conte, D.2
  • 4
    • 18344373363 scopus 로고    scopus 로고
    • Small RNAs: Classification, biogenesis, and function
    • Kim, V. N. Small RNAs: classification, biogenesis, and function Mol. Cells 2005, 19, 1-15
    • (2005) Mol. Cells , vol.19 , pp. 1-15
    • Kim, V.N.1
  • 5
    • 33646137364 scopus 로고    scopus 로고
    • The diversity of RNA silencing pathways in plants
    • Brodersen, P.; Voinnet, O. The diversity of RNA silencing pathways in plants Trends Genet 2006, 22, 268-280
    • (2006) Trends Genet , vol.22 , pp. 268-280
    • Brodersen, P.1    Voinnet, O.2
  • 6
    • 33745271035 scopus 로고    scopus 로고
    • Functions of microRNAs and related small RNAs in plants
    • Mallory, A. C.; Vaucheret, H. Functions of microRNAs and related small RNAs in plants Nat. Genetics 2006, 38 (Suppl) S31-S36
    • (2006) Nat. Genetics , vol.38 , pp. 31-S36
    • Mallory, A.C.1    Vaucheret, H.2
  • 7
    • 58749096360 scopus 로고    scopus 로고
    • On the road to reading the RNA-interference code
    • Siomi, H.; Siomi, M. C. On the road to reading the RNA-interference code Nature 2009, 457, 396-404
    • (2009) Nature , vol.457 , pp. 396-404
    • Siomi, H.1    Siomi, M.C.2
  • 8
    • 77952043572 scopus 로고    scopus 로고
    • RNAi-based therapeutics-current status, challenges and prospects
    • Tiemann, K.; Rossi, J. J. RNAi-based therapeutics-current status, challenges and prospects EMBO Mol. Med. 2009, 1, 142-151
    • (2009) EMBO Mol. Med. , vol.1 , pp. 142-151
    • Tiemann, K.1    Rossi, J.J.2
  • 10
    • 79952450888 scopus 로고    scopus 로고
    • Intestinal delivery of non-viral gene therapeutics: Physiological barriers and preclinical models
    • O'Neill, M. J.; Bourre, L.; Melgar, S.; O'Driscoll, C. M. Intestinal delivery of non-viral gene therapeutics: physiological barriers and preclinical models Drug Discovery Today 2011, 16, 203-218
    • (2011) Drug Discovery Today , vol.16 , pp. 203-218
    • O'Neill, M.J.1    Bourre, L.2    Melgar, S.3    O'Driscoll, C.M.4
  • 11
    • 84877335523 scopus 로고    scopus 로고
    • Safety assessment of food and feed from biotechnology-derived crops employing RNA-mediated gene regulation to achieve desired traits: A scientific review
    • Petrick, J. S.; Brower-Toland, B.; Jackson, A. L.; Kier, L. D. Safety assessment of food and feed from biotechnology-derived crops employing RNA-mediated gene regulation to achieve desired traits: a scientific review Regul. Toxicol. Pharmacol. 2013, 66, 167-176
    • (2013) Regul. Toxicol. Pharmacol. , vol.66 , pp. 167-176
    • Petrick, J.S.1    Brower-Toland, B.2    Jackson, A.L.3    Kier, L.D.4
  • 12
    • 21444438449 scopus 로고    scopus 로고
    • Tomato transgene structure and silencing
    • Sanders, R. A.; Hiatt, W. Tomato transgene structure and silencing Nat. Biotechnol. 2005, 23, 287-289
    • (2005) Nat. Biotechnol. , vol.23 , pp. 287-289
    • Sanders, R.A.1    Hiatt, W.2
  • 14
    • 77957920491 scopus 로고    scopus 로고
    • Tapping RNA silencing pathways for plant biotechnology
    • Frizzi, A.; Huang, S. Tapping RNA silencing pathways for plant biotechnology Plant Biotechnol. J. 2010, 8, 655-677
    • (2010) Plant Biotechnol. J. , vol.8 , pp. 655-677
    • Frizzi, A.1    Huang, S.2
  • 15
    • 4444234497 scopus 로고    scopus 로고
    • In vivo investigation of the transcription, processing, endonucleolytic activity, and functional relevance of the spatial distribution of a plant miRNA
    • Parizotto, E. A.; Dunoyer, P.; Rahm, N.; Himber, C.; Voinnet, O. In vivo investigation of the transcription, processing, endonucleolytic activity, and functional relevance of the spatial distribution of a plant miRNA Genes Dev. 2004, 18, 2237-2242
    • (2004) Genes Dev. , vol.18 , pp. 2237-2242
    • Parizotto, E.A.1    Dunoyer, P.2    Rahm, N.3    Himber, C.4    Voinnet, O.5
  • 16
    • 84857497803 scopus 로고    scopus 로고
    • Functional specialization of the plant miR396 regulatory network through distinct microRNA-target interactions
    • Debernardi, J. M.; Rodriguez, R. E.; Mecchia, M. A.; Palatnik, J. F. Functional specialization of the plant miR396 regulatory network through distinct microRNA-target interactions PLoS Genet. 2012, 8 e1002419
    • (2012) PLoS Genet. , vol.8 , pp. 1002419
    • Debernardi, J.M.1    Rodriguez, R.E.2    Mecchia, M.A.3    Palatnik, J.F.4
  • 17
    • 33745612464 scopus 로고    scopus 로고
    • Widespread siRNA 'off-target' transcript silencing mediated by seed region sequence complementarity
    • Jackson, A. L.; Burchard, J.; Schelter, J.; Chau, B. N.; Cleary, M.; Lim, L.; Linsley, P. S. Widespread siRNA 'off-target' transcript silencing mediated by seed region sequence complementarity RNA 2006, 12, 1179-1187
    • (2006) RNA , vol.12 , pp. 1179-1187
    • Jackson, A.L.1    Burchard, J.2    Schelter, J.3    Chau, B.N.4    Cleary, M.5    Lim, L.6    Linsley, P.S.7
  • 18
    • 84886254200 scopus 로고    scopus 로고
    • The effect of regions flanking target site on siRNA potency
    • Liu, L.; Li, Q. Z.; Lin, H.; Zuo, Y. C. The effect of regions flanking target site on siRNA potency Genomics 2013, 102, 215-222
    • (2013) Genomics , vol.102 , pp. 215-222
    • Liu, L.1    Li, Q.Z.2    Lin, H.3    Zuo, Y.C.4
  • 19
    • 72549097028 scopus 로고    scopus 로고
    • SiDirect 2.0: Updated software for designing functional siRNA with reduced seed-dependent off-target effect
    • Naito, Y.; Jun Yoshimura, J.; Morishita, S.; Ui-Tei, K. siDirect 2.0: updated software for designing functional siRNA with reduced seed-dependent off-target effect BMC Bioinf. 2009, 10, 392
    • (2009) BMC Bioinf. , vol.10 , pp. 392
    • Naito, Y.1    Jun Yoshimura, J.2    Morishita, S.3    Ui-Tei, K.4
  • 20
    • 79959580032 scopus 로고    scopus 로고
    • Using small RNA sequences to diagnose, sequence, and investigate the infectivity characteristics of vegetable-infecting viruses
    • Hagen, C.; Frizzi, A.; Kao, J.; Jia, L.; Huang, M.; Zhang, Y.; Huang, S. Using small RNA sequences to diagnose, sequence, and investigate the infectivity characteristics of vegetable-infecting viruses Arch. Virol. 2011, 156, 1209-1216
    • (2011) Arch. Virol. , vol.156 , pp. 1209-1216
    • Hagen, C.1    Frizzi, A.2    Kao, J.3    Jia, L.4    Huang, M.5    Zhang, Y.6    Huang, S.7
  • 23
    • 84885455647 scopus 로고    scopus 로고
    • Differential expression of tomato spotted wilt virus-derived viral small RNAs in infected commercial and experimental host plants
    • Mitter, N.; Koundal, V.; Williams, S.; Pappu, H. Differential expression of tomato spotted wilt virus-derived viral small RNAs in infected commercial and experimental host plants PLoS One 2013, 8 e76276
    • (2013) PLoS One , vol.8 , pp. 76276
    • Mitter, N.1    Koundal, V.2    Williams, S.3    Pappu, H.4
  • 25
    • 84880852727 scopus 로고    scopus 로고
    • Ineffective delivery of diet-derived microRNAs to recipient animal organisms
    • Snow, J. W.; Hale, A.; Isaacs, S. K.; Baggish, A. L.; Chan, S. Y. Ineffective delivery of diet-derived microRNAs to recipient animal organisms RNA Biol. 2013, 10, 1-10
    • (2013) RNA Biol. , vol.10 , pp. 1-10
    • Snow, J.W.1    Hale, A.2    Isaacs, S.K.3    Baggish, A.L.4    Chan, S.Y.5
  • 26
    • 84880854859 scopus 로고    scopus 로고
    • Real-time quantitative PCR and droplet digital PCR for plant miRNAs in mammalian blood provide little evidence for general uptake of dietary miRNAs
    • Witwer, K. W.; McAlexander, M. A.; Queen, S. E.; Adams, R. J. Real-time quantitative PCR and droplet digital PCR for plant miRNAs in mammalian blood provide little evidence for general uptake of dietary miRNAs RNA Biol. 2013, 10, 1-7
    • (2013) RNA Biol. , vol.10 , pp. 1-7
    • Witwer, K.W.1    McAlexander, M.A.2    Queen, S.E.3    Adams, R.J.4
  • 28
    • 10644237968 scopus 로고    scopus 로고
    • RNAi-mediated pathways in the nucleus
    • Matzke, M. A.; Birchler, J. A. RNAi-mediated pathways in the nucleus Nat. Rev. Genet. 2005, 6, 24-35
    • (2005) Nat. Rev. Genet. , vol.6 , pp. 24-35
    • Matzke, M.A.1    Birchler, J.A.2
  • 29
    • 33645528966 scopus 로고    scopus 로고
    • Post-transcriptional small RNA pathways in plants: Mechanisms and regulations
    • Vaucheret, H. Post-transcriptional small RNA pathways in plants: mechanisms and regulations Genes Dev. 2006, 20, 759-771
    • (2006) Genes Dev. , vol.20 , pp. 759-771
    • Vaucheret, H.1
  • 30
    • 14344252157 scopus 로고    scopus 로고
    • Induction and suppression of RNA silencing: Insights from viral infections
    • Voinnet, O. Induction and suppression of RNA silencing: insights from viral infections Nat. Rev. Genet. 2005, 6, 206-220
    • (2005) Nat. Rev. Genet. , vol.6 , pp. 206-220
    • Voinnet, O.1
  • 31
    • 14744278972 scopus 로고    scopus 로고
    • RNA silencing and antiviral defense in plants
    • Wang, M. B.; Metzlaff, M. RNA silencing and antiviral defense in plants Curr. Opin. Plant Biol. 2005, 8, 216-222
    • (2005) Curr. Opin. Plant Biol. , vol.8 , pp. 216-222
    • Wang, M.B.1    Metzlaff, M.2
  • 35
    • 33748290141 scopus 로고    scopus 로고
    • The high cost of not consuming fruits and vegetables
    • Bazzano, L. A. The high cost of not consuming fruits and vegetables J. Am. Diet. Assoc. 2006, 106, 1364-1368
    • (2006) J. Am. Diet. Assoc. , vol.106 , pp. 1364-1368
    • Bazzano, L.A.1
  • 36
    • 31444444814 scopus 로고    scopus 로고
    • Eat your fruit and vegetables
    • Steffen, L. M. Eat your fruit and vegetables Lancet 2006, 367, 278-279
    • (2006) Lancet , vol.367 , pp. 278-279
    • Steffen, L.M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.