Endomembrane trafficking protein SEC24A regulates cell size patterning in arabidopsis

Plant Physiology

Volumn 166, Issue 4, 2014, Pages 1877-1890

  Qu, Xian ^a   Chatty, Prerana Rao ^a   Roeder, Adrienne H K ^a  

^a School of Integrative Plant Sciences   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS;

PROTEIN SUBUNIT; SUCCINATE DEHYDROGENASE (UBIQUINONE);

ARABIDOPSIS; CELL CYCLE; CELL SIZE; CYTOKINESIS; CYTOLOGY; ENDOREDUPLICATION; GENETICS; GIANT CELL; GOLGI COMPLEX; GROWTH, DEVELOPMENT AND AGING; METABOLISM; PLANT EPIDERMIS; POLYPLOIDY; PROTEIN SUBUNIT; PROTEIN TRANSPORT; SECRETORY PATHWAY;

ARABIDOPSIS; CELL CYCLE; CELL SIZE; CYTOKINESIS; ELECTRON TRANSPORT COMPLEX II; ENDOREDUPLICATION; GIANT CELLS; GOLGI APPARATUS; PLANT EPIDERMIS; POLYPLOIDY; PROTEIN SUBUNITS; PROTEIN TRANSPORT; SECRETORY PATHWAY;

EID: 84914129182     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.114.246033     Document Type: Article

References (77)

1. Aridor M, Weissman J, Bannykh S, Nuoffer C, Balch WE (1998) Cargo selection by the COPII budding machinery during export from the ER. J Cell Biol 141: 61-70.
2. Balasubramanian MK, Bi E, Glotzer M (2004) Comparative analysis of cytokinesis in budding yeast, fission yeast and animal cells. Curr Biol 14: R806-R818.
3. Barlowe, C (2003) Signals for COPII-dependent export from the ER: what's the ticket out? Trends Cell Biol 13: 295-300.
4. Barlowe C, Orci L, Yeung T, Hosobuchi M, Hamamoto S, Salama N, Rexach MF, Ravazzola M, Amherdt M, Schekman R (1994) COPII: a membrane coat formed by Sec proteins that drive vesicle budding from the endoplasmic reticulum. Cell 77: 895-907.
5. Barlowe C, Schekman R (1993) SEC12 encodes a guanine-nucleotideexchange factor essential for transport vesicle budding from the ER. Nature 365: 347-349.
6. Bassham DC, Brandizzi F, Otegui MS, Sanderfoot AA (2008) The secretory system of Arabidopsis. Arabidopsis Book 6: e0116 doi/10. 1199/tab. 0116.
7. Becraft PW, Asuncion-Crabb Y (2000) Positional cues specify and maintain aleurone cell fate in maize endosperm development. Development 127: 4039-4048.
8. Becraft PW, Stinard PS, McCarty DR (1996) CRINKLY4: A TNFR-like receptor kinase involved in maize epidermal differentiation. Science 273: 1406-1409.
9. Bi X, Corpina RA, Goldberg J (2002) Structure of the Sec23/24-Sar1 prebudding complex of the COPII vesicle coat. Nature 419: 271-277.
10. Bickford LC, Mossessova E, Goldberg J (2004) A structural view of the COPII vesicle coat. Curr Opin Struct Biol 14: 147-153.
11. Blilou I, Xu J, Wildwater M, Willemsen V, Paponov I, Friml J, Heidstra R, Aida M, Palme K, Scheres B (2005) The PIN auxin efflux facilitator network controls growth and patterning in Arabidopsis roots. Nature 433: 39-44.
12. Breuer C, Ishida T, Sugimoto K (2010) Developmental control of endocycles and cell growth in plants. Curr Opin Plant Biol 13: 654-660.
13. Cao X, Barlowe C (2000) Asymmetric requirements for a Rab GTPase and SNARE proteins in fusion of COPII vesicles with acceptor membranes. J Cell Biol 149: 55-66.
14. Chatre L, Brandizzi F, Hocquellet A, Hawes C, Moreau P (2005) Sec22 and Memb11 are v-SNAREs of the anterograde endoplasmic reticulum-Golgi pathway in tobacco leaf epidermal cells. Plant Physiol 139: 1244-1254.
15. Churchman ML, Brown ML, Kato N, Kirik V, Hülskamp M, Inzé D, De Veylder L, Walker JD, Zheng Z, Oppenheimer DG, et al (2006) SIAMESE, a plant-specific cell cycle regulator, controls endoreplication onset in Arabidopsis thaliana. Plant Cell 18: 3145-3157.
16. Clough SJ, Bent AF (1998) Floral dip: a simplified method for Agrobacteriummediated transformation of Arabidopsis thaliana. Plant J 16: 735-743.
17. Conger R, Chen Y, Fornaciari S, Faso C, Held MA, Renna L, Brandizzi F (2011) Evidence for the involvement of the Arabidopsis SEC24A in male transmission. J Exp Bot 62: 4917-4926.
18. Copic A, Latham CF, Horlbeck MA, D'Arcangelo JG, Miller EA (2012) ER cargo properties specify a requirement for COPII coat rigidity mediated by Sec13p. Science 335: 1359-1362.
19. Cunha AL, Roeder AH, Meyerowitz EM (2010) Segmenting the sepal and shoot apical meristem of Arabidopsis thaliana. Conf Proc IEEE Eng Med Biol Soc 2010: 5338-5342.
20. Dascher C, Ossig R, Gallwitz D, Schmitt HD (1991) Identification and structure of four yeast genes (SLY) that are able to suppress the functional loss of YPT1, a member of the RAS superfamily. Mol Cell Biol 11: 872-885.
21. Dissmeyer N, Nowack MK, Pusch S, Stals H, Inzé D, Grini PE, Schnittger A (2007) T-loop phosphorylation of Arabidopsis CDKA; 1 is required for its function and can be partially substituted by an aspartate residue. Plant Cell 19: 972-985.
22. Edgar BA, Orr-Weaver TL (2001) Endoreplication cell cycles: more for less. Cell 105: 297-306.
23. El-Kasmi F, Pacher T, Strompen G, Stierhof YD, Müller LM, Koncz C, Mayer U, Jürgens G (2011) Arabidopsis SNARE protein SEC22 is essential for gametophyte development and maintenance of Golgi-stack integrity. Plant J 66: 268-279.
24. Faso C, Chen YN, Tamura K, Held M, Zemelis S, Marti L, Saravanan R, Hummel E, Kung L, Miller E, et al (2009) A missense mutation in the Arabidopsis COPII coat protein Sec24A induces the formation of clusters of the endoplasmic reticulum and Golgi apparatus. Plant Cell 21: 3655-3671.
25. Geldner N, Anders N, Wolters H, Keicher J, Kornberger W, Muller P, Delbarre A, Ueda T, Nakano A, Jürgens G (2003) The Arabidopsis GNOM ARF-GEF mediates endosomal recycling, auxin transport, and auxin-dependent plant growth. Cell 112: 219-230.
26. Geldner N, Hyman DL, Wang X, Schumacher K, Chory J (2007) Endosomal signaling of plant steroid receptor kinase BRI1. Genes Dev 21: 1598-1602.
27. Gifford ML, Robertson FC, Soares DC, Ingram GC (2005) ARABIDOPSIS CRINKLY4 function, internalization, and turnover are dependent on the extracellular crinkly repeat domain. Plant Cell 17: 1154-1166.
28. Gordon SP, Heisler MG, Reddy GV, Ohno C, Das P, Meyerowitz EM (2007) Pattern formation during de novo assembly of the Arabidopsis shoot meristem. Development 134: 3539-3548.
29. Grunewald W, Friml J (2010) The march of the PINs: developmental plasticity by dynamic polar targeting in plant cells. EMBO J 29: 2700-2714.
30. Heisler MG, Ohno C, Das P, Sieber P, Reddy GV, Long JA, Meyerowitz EM (2005) Patterns of auxin transport and gene expression during primordium development revealed by live imaging of the Arabidopsis inflorescence meristem. Curr Biol 15: 1899-1911.
31. Inzé D, De Veylder L (2006) Cell cycle regulation in plant development. Annu Rev Genet 40: 77-105.
32. Johnson KL, Faulkner C, Jeffree CE, Ingram GC (2008) The phytocalpain defective kernel 1 is a novel Arabidopsis growth regulator whose activity is regulated by proteolytic processing. Plant Cell 20: 2619-2630.
33. Jönsson H, Heisler MG, Shapiro BE, Meyerowitz EM, Mjolsness E (2006) An auxin-driven polarized transport model for phyllotaxis. Proc Natl Acad Sci USA 103: 1633-1638.
34. Jürgens G (2005) Cytokinesis in higher plants. Annu Rev Plant Biol 56: 281-299.
35. Kuehn MJ, Herrmann JM, Schekman R (1998) COPII-cargo interactions direct protein sorting into ER-derived transport vesicles. Nature 391: 187-190.
36. Leiva-Neto JT, Grafi G, Sabelli PA, Dante RA, Woo YM, Maddock S, Gordon-Kamm WJ, Larkins BA (2004) A dominant negative mutant of cyclin-dependent kinase A reduces endoreduplication but not cell size or gene expression in maize endosperm. Plant Cell 16: 1854-1869.
37. Leof EB (2000) Growth factor receptor signalling: location, location, location. Trends Cell Biol 10: 343-348.
38. Lewis J (2008) From signals to patterns: space, time, and mathematics in developmental biology. Science 322: 399-403.
39. Lid SE, Gruis D, Jung R, Lorentzen JA, Ananiev E, Chamberlin M, Niu X, Meeley R, Nichols S, Olsen OA (2002) The defective kernel 1 (dek1) gene required for aleurone cell development in the endosperm of maize grains encodes a membrane protein of the calpain gene superfamily. Proc Natl Acad Sci USA 99: 5460-5465.
40. Lipka V, Kwon C, Panstruga R (2007) SNARE-ware: the role of SNAREdomain proteins in plant biology. Annu Rev Cell Dev Biol 23: 147-174.
41. Liu Y, Barlowe C (2002) Analysis of Sec22p in endoplasmic reticulum/Golgi transport reveals cellular redundancy in SNARE protein function. Mol Biol Cell 13: 3314-3324.
42. Lu D, Lin W, Gao X, Wu S, Cheng C, Avila J, Heese A, Devarenne TP, He P, Shan L (2011) Direct ubiquitination of pattern recognition receptor FLS2 attenuates plant innate immunity. Science 332: 1439-1442.
43. Lukowitz W, Gillmor CS, Scheible WR (2000) Positional cloning in Arabidopsis: why it feels good to have a genome initiative working for you. Plant Physiol 123: 795-805.
44. Lukowitz W, Mayer U, Jürgens G (1996) Cytokinesis in the Arabidopsis embryo involves the syntaxin-related KNOLLE gene product. Cell 84: 61-71.
45. Magliery TJ, Wilson CG, Pan W, Mishler D, Ghosh I, Hamilton AD, Regan L (2005) Detecting protein-protein interactions with a green fluorescent protein fragment reassembly trap: scope and mechanism. J Am Chem Soc 127: 146-157.
46. Mancias JD, Goldberg J (2007) The transport signal on Sec22 for packaging into COPII-coated vesicles is a conformational epitope. Mol Cell 26: 403-414.
47. Mancias JD, Goldberg J (2008) Structural basis of cargo membrane protein discrimination by the human COPII coat machinery. EMBO J 27: 2918-2928.
48. Marshall WF, Young KD, Swaffer M, Wood E, Nurse P, Kimura A, Frankel J, Wallingford J, Walbot V, Qu X, et al (2012) What determines cell size? BMC Biol 10: 101.
49. Marti L, Fornaciari S, Renna L, Stefano G, Brandizzi F (2010) COPIImediated traffic in plants. Trends Plant Sci 15: 522-528.
50. Miller EA, Beilharz TH, Malkus PN, Lee MC, Hamamoto S, Orci L, Schekman R (2003) Multiple cargo binding sites on the COPII subunit Sec24p ensure capture of diverse membrane proteins into transport vesicles. Cell 114: 497-509.
51. Mossessova E, Bickford LC, Goldberg J (2003) SNARE selectivity of the COPII coat. Cell 114: 483-495.
52. Nair U, Jotwani A, Geng J, Gammoh N, Richerson D, Yen WL, Griffith J, Nag S, Wang K, Moss T, et al (2011) SNARE proteins are required for macroautophagy. Cell 146: 290-302.
53. Nakano A, Muramatsu M (1989) A novel GTP-binding protein, Sar1p, is involved in transport from the endoplasmic reticulum to the Golgi apparatus. J Cell Biol 109: 2677-2691.
54. Nakano RT, Matsushima R, Ueda H, Tamura K, Shimada T, Li L, Hayashi Y, Kondo M, Nishimura M, Hara-Nishimura I (2009) GNOM-LIKE1/ERMO1 and SEC24a/ERMO2 are required for maintenance of endoplasmic reticulum morphology in Arabidopsis thaliana. Plant Cell 21: 3672-3685.
55. Ohashi-Ito K, Bergmann DC (2006) Arabidopsis FAMA controls the final proliferation/differentiation switch during stomatal development. Plant Cell 18: 2493-2505.
56. Panopoulou E, Gillooly DJ, Wrana JL, Zerial M, Stenmark H, Murphy C, Fotsis T (2002) Early endosomal regulation of Smad-dependent signaling in endothelial cells. J Biol Chem 277: 18046-18052.
57. Reichardt I, Stierhof YD, Mayer U, Richter S, Schwarz H, Schumacher K, Jürgens G (2007) Plant cytokinesis requires de novo secretory trafficking but not endocytosis. Curr Biol 17: 2047-2053.
58. Reinhardt D, Pesce ER, Stieger P, Mandel T, Baltensperger K, Bennett M, Traas J, Friml J, Kuhlemeier C (2003) Regulation of phyllotaxis by polar auxin transport. Nature 426: 255-260.
59. Rizk A, Paul G, Incardona P, Bugarski M, Mansouri M, Niemann A, Ziegler U, Berger P, Sbalzarini IF (2014) Segmentation and quantification of subcellular structures in fluorescence microscopy images using Squassh. Nat Protoc 9: 586-596.
60. Roeder AH, Chickarmane V, Cunha A, Obara B, Manjunath BS, Meyerowitz EM (2010) Variability in the control of cell division underlies sepal epidermal patterning in Arabidopsis thaliana. PLoS Biol 8: e1000367.
61. Roeder AH, Cunha A, Ohno CK, Meyerowitz EM (2012) Cell cycle regulates cell type in the Arabidopsis sepal. Development 139: 4416-4427.
62. Roeder AH, Ferrándiz C, Yanofsky MF (2003) The role of the REPLUMLESS homeodomain protein in patterning the Arabidopsis fruit. Curr Biol 13: 1630-1635.
63. Sessions A, Weigel D, Yanofsky MF (1999) The Arabidopsis thaliana MERISTEM LAYER 1 promoter specifies epidermal expression in meristems and young primordia. Plant J 20: 259-263.
64. Shaywitz DA, Espenshade PJ, Gimeno RE, Kaiser CA (1997) COPII subunit interactions in the assembly of the vesicle coat. J Biol Chem 272: 25413-25416.
65. Shen B, Li C, Min Z, Meeley RB, Tarczynski MC, Olsen OA (2003) sal1 determines the number of aleurone cell layers in maize endosperm and encodes a class E vacuolar sorting protein. Proc Natl Acad Sci USA 100: 6552-6557.
66. Smith RS, Guyomarc'h S, Mandel T, ReinhardtD, Kuhlemeier C, Prusinkiewicz P (2006) A plausible model of phyllotaxis. Proc Natl Acad Sci USA 103: 1301-1306.
67. Smith ZR, Long JA (2010) Control of Arabidopsis apical-basal embryo polarity by antagonistic transcription factors. Nature 464: 423-426.
68. Söllner R, Glässer G, Wanner G, Somerville CR, Jürgens G, Assaad FF (2002) Cytokinesis-defective mutants of Arabidopsis. Plant Physiol 129: 678-690.
69. Spang A, Schekman R (1998) Reconstitution of retrograde transport from the Golgi to the ER in vitro. J Cell Biol 143: 589-599.
70. Stagg SM, Gürkan C, Fowler DM, LaPointe P, Foss TR, Potter CS, Carragher B, Balch WE (2006) Structure of the Sec13/31 COPII coat cage. Nature 439: 234-238.
71. Sugimoto-Shirasu K, Roberts K (2003) "Big it up": endoreduplication and cell-size control in plants. Curr Opin Plant Biol 6: 544-553.
72. Sylvester AW (2000) Division decisions and the spatial regulation of cytokinesis. Curr Opin Plant Biol 3: 58-66.
73. Tian Q, Olsen L, Sun B, Lid SE, Brown RC, Lemmon BE, Fosnes K, Gruis DF, Opsahl-Sorteberg HG, Otegui MS, et al (2007) Subcellular localization and functional domain studies of DEFECTIVE KERNEL1 in maize and Arabidopsis suggest a model for aleurone cell fate specification involving CRINKLY4 and SUPERNUMERARY ALEURONE LAYER1. Plant Cell 19: 3127-3145.
74. Vanneste S, Friml J (2009) Auxin: a trigger for change in plant development. Cell 136: 1005-1016.
75. Verkest A, Manes CL, Vercruysse S, Maes S, Van Der Schueren E, Beeckman T, Genschik P, Kuiper M, Inzé D, De Veylder L (2005) The cyclin-dependent kinase inhibitor KRP2 controls the onset of the endoreduplication cycle during Arabidopsis leaf development through inhibition of mitotic CDKA; 1 kinase complexes. Plant Cell 17: 1723-1736.
76. Vieira AV, Lamaze C, Schmid SL (1996) Control of EGF receptor signaling by clathrin-mediated endocytosis. Science 274: 2086-2089.
77. Zanetti G, Pahuja KB, Studer S, Shim S, Schekman R (2012) COPII and the regulation of protein sorting in mammals. Nat Cell Biol 14: 20-28.