-
1
-
-
80052724368
-
Trypanosoma brucei mitochondrial respiratome: composition and organization in procyclic form
-
Acestor N., Zikova A., Dalley R.A., Anupama A., Panigrahi A.K., Stuart K.D. Trypanosoma brucei mitochondrial respiratome: composition and organization in procyclic form. Mol. Cell. Proteomics 2011, 10(M110):006908.
-
(2011)
Mol. Cell. Proteomics
, vol.10
, Issue.M110
, pp. 006908
-
-
Acestor, N.1
Zikova, A.2
Dalley, R.A.3
Anupama, A.4
Panigrahi, A.K.5
Stuart, K.D.6
-
2
-
-
84867310470
-
The revised classification of eukaryotes
-
Adl S.M., Simpson A.G., Lane C.E., Lukes J., Bass D., Bowser S.S., Brown M.W., Burki F., Dunthorn M., Hampl V., Heiss A., Hoppenrath M., Lara E., Le Gall L., Lynn D.H., McManus H., Mitchell E.A., Mozley-Stanridge S.E., Parfrey L.W., Pawlowski J., Rueckert S., Shadwick R.S., Schoch C.L., Smirnov A., Spiegel F.W. The revised classification of eukaryotes. J. Eukaryot. Microbiol. 2012, 59:429-493.
-
(2012)
J. Eukaryot. Microbiol.
, vol.59
, pp. 429-493
-
-
Adl, S.M.1
Simpson, A.G.2
Lane, C.E.3
Lukes, J.4
Bass, D.5
Bowser, S.S.6
Brown, M.W.7
Burki, F.8
Dunthorn, M.9
Hampl, V.10
Heiss, A.11
Hoppenrath, M.12
Lara, E.13
Le Gall, L.14
Lynn, D.H.15
McManus, H.16
Mitchell, E.A.17
Mozley-Stanridge, S.E.18
Parfrey, L.W.19
Pawlowski, J.20
Rueckert, S.21
Shadwick, R.S.22
Schoch, C.L.23
Smirnov, A.24
Spiegel, F.W.25
more..
-
3
-
-
79959714122
-
A scaffold of accessory subunits links the peripheral arm and the distal proton-pumping module of mitochondrial complex I
-
Angerer H., Zwicker K., Wumaier Z., Sokolova L., Heide H., Steger M., Kaiser S., Nubel E., Brutschy B., Radermacher M., Brandt U., Zickermann V. A scaffold of accessory subunits links the peripheral arm and the distal proton-pumping module of mitochondrial complex I. Biochem. J. 2011, 437:279-288.
-
(2011)
Biochem. J.
, vol.437
, pp. 279-288
-
-
Angerer, H.1
Zwicker, K.2
Wumaier, Z.3
Sokolova, L.4
Heide, H.5
Steger, M.6
Kaiser, S.7
Nubel, E.8
Brutschy, B.9
Radermacher, M.10
Brandt, U.11
Zickermann, V.12
-
4
-
-
78049382895
-
Highly divergent mitochondrial ATP synthase complexes in Tetrahymena thermophila
-
Balabaskaran Nina P., Dudkina N.V., Kane L.A., van Eyk J.E., Boekema E.J., Mather M.W., Vaidya A.B. Highly divergent mitochondrial ATP synthase complexes in Tetrahymena thermophila. PLoS Biol. 2010, 8:e1000418.
-
(2010)
PLoS Biol.
, vol.8
, pp. e1000418
-
-
Balabaskaran Nina, P.1
Dudkina, N.V.2
Kane, L.A.3
van Eyk, J.E.4
Boekema, E.J.5
Mather, M.W.6
Vaidya, A.B.7
-
5
-
-
80053651587
-
GenBank
-
Benson D.A., Cavanaugh M., Clark K., Karsch-Mizrachi I., Lipman D.J., Ostell J., Sayers E.W. GenBank. Nucleic Acids Res. 2013, 41:D36-D42.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D36-D42
-
-
Benson, D.A.1
Cavanaugh, M.2
Clark, K.3
Karsch-Mizrachi, I.4
Lipman, D.J.5
Ostell, J.6
Sayers, E.W.7
-
6
-
-
0017184389
-
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
Bradford M.M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 1976, 72:248-254.
-
(1976)
Anal. Biochem.
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
7
-
-
0024687483
-
Cytochrome c oxidase of Euglena gracilis: purification, characterization, and identification of mitochondrially synthesized subunits
-
Bronstrup U., Hachtel W. Cytochrome c oxidase of Euglena gracilis: purification, characterization, and identification of mitochondrially synthesized subunits. J. Bioenerg. Biomembr. 1989, 21:359-373.
-
(1989)
J. Bioenerg. Biomembr.
, vol.21
, pp. 359-373
-
-
Bronstrup, U.1
Hachtel, W.2
-
8
-
-
0016771460
-
Changes in mitochondrial density and succinic dehydrogenase activity in Euglena gracilis as a function of the dependency on light for growth
-
Brown G.E., Preston J.F. Changes in mitochondrial density and succinic dehydrogenase activity in Euglena gracilis as a function of the dependency on light for growth. Arch. Microbiol. 1975, 104:233-236.
-
(1975)
Arch. Microbiol.
, vol.104
, pp. 233-236
-
-
Brown, G.E.1
Preston, J.F.2
-
9
-
-
36949089090
-
Ethanol stimulation of oxidative metabolism in Euglena gracilis
-
Buetow D.E. Ethanol stimulation of oxidative metabolism in Euglena gracilis. Nature 1961, 190:1196-1196.
-
(1961)
Nature
, vol.190
, pp. 1196-1196
-
-
Buetow, D.E.1
-
10
-
-
84876584752
-
Strikingly bacteria-like and gene-rich mitochondrial genomes throughout Jakobid protists
-
Burger G., Gray M.W., Forget L., Lang B.F. Strikingly bacteria-like and gene-rich mitochondrial genomes throughout Jakobid protists. Genome Biol. Evol. 2013, 5:418-438.
-
(2013)
Genome Biol. Evol.
, vol.5
, pp. 418-438
-
-
Burger, G.1
Gray, M.W.2
Forget, L.3
Lang, B.F.4
-
11
-
-
80052769378
-
Mitochondrial NADH:ubiquinone oxidoreductase (complex I) in eukaryotes: a highly conserved subunit composition highlighted by mining of protein databases
-
Cardol P. Mitochondrial NADH:ubiquinone oxidoreductase (complex I) in eukaryotes: a highly conserved subunit composition highlighted by mining of protein databases. Biochim. Biophys. Acta 2011, 1807:1390-1397.
-
(2011)
Biochim. Biophys. Acta
, vol.1807
, pp. 1390-1397
-
-
Cardol, P.1
-
12
-
-
0036304765
-
Impact of mutations affecting ND mitochondria-encoded subunits on the activity and assembly of complex I in Chlamydomonas. Implication for the structural organization of the enzyme
-
Cardol P., Matagne R.F., Remacle C. Impact of mutations affecting ND mitochondria-encoded subunits on the activity and assembly of complex I in Chlamydomonas. Implication for the structural organization of the enzyme. J. Mol. Biol. 2002, 319:1211-1221.
-
(2002)
J. Mol. Biol.
, vol.319
, pp. 1211-1221
-
-
Cardol, P.1
Matagne, R.F.2
Remacle, C.3
-
13
-
-
4644250423
-
Higher plant-like subunit composition of mitochondrial complex I from Chlamydomonas reinhardtii: 31 conserved components among eukaryotes
-
Cardol P., Vanrobaeys F., Devreese B., Van Beeumen J., Matagne R.F., Remacle C. Higher plant-like subunit composition of mitochondrial complex I from Chlamydomonas reinhardtii: 31 conserved components among eukaryotes. Biochim. Biophys. Acta 2004, 1658:212-224.
-
(2004)
Biochim. Biophys. Acta
, vol.1658
, pp. 212-224
-
-
Cardol, P.1
Vanrobaeys, F.2
Devreese, B.3
Van Beeumen, J.4
Matagne, R.F.5
Remacle, C.6
-
14
-
-
41349094766
-
In Chlamydomonas, the loss of ND5 subunit prevents the assembly of whole mitochondrial complex I and leads to the formation of a low abundant 700kDa subcomplex
-
Cardol P., Boutaffala L., Memmi S., Devreese B., Matagne R.F., Remacle C. In Chlamydomonas, the loss of ND5 subunit prevents the assembly of whole mitochondrial complex I and leads to the formation of a low abundant 700kDa subcomplex. Biochim. Biophys. Acta 2008, 1777:388-396.
-
(2008)
Biochim. Biophys. Acta
, vol.1777
, pp. 388-396
-
-
Cardol, P.1
Boutaffala, L.2
Memmi, S.3
Devreese, B.4
Matagne, R.F.5
Remacle, C.6
-
15
-
-
33751574953
-
Bovine complex I is a complex of 45 different subunits
-
Carroll J., Fearnley I.M., Skehel J.M., Shannon R.J., Hirst J., Walker J.E. Bovine complex I is a complex of 45 different subunits. J. Biol. Chem. 2006, 281:32724-32727.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 32724-32727
-
-
Carroll, J.1
Fearnley, I.M.2
Skehel, J.M.3
Shannon, R.J.4
Hirst, J.5
Walker, J.E.6
-
16
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 2000, 17:540-552.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
19
-
-
0019764215
-
Eukaryote kingdoms: seven or nine?
-
Cavalier-Smith T. Eukaryote kingdoms: seven or nine?. Biosystems 1981, 14:461-481.
-
(1981)
Biosystems
, vol.14
, pp. 461-481
-
-
Cavalier-Smith, T.1
-
20
-
-
33748309413
-
Trypanosome alternative oxidase: from molecule to function
-
Chaudhuri M., Ott R.D., Hill G.C. Trypanosome alternative oxidase: from molecule to function. Trends Parasitol. 2006, 22:484-491.
-
(2006)
Trends Parasitol.
, vol.22
, pp. 484-491
-
-
Chaudhuri, M.1
Ott, R.D.2
Hill, G.C.3
-
21
-
-
0028181140
-
Fo membrane domain of ATP synthase from bovine heart mitochondria: purification, subunit composition, and reconstitution with F1-ATPase
-
Collinson I.R., Runswick M.J., Buchanan S.K., Fearnley I.M., Skehel J.M., van Raaij M.J., Griffiths D.E., Walker J.E. Fo membrane domain of ATP synthase from bovine heart mitochondria: purification, subunit composition, and reconstitution with F1-ATPase. Biochemistry 1994, 33:7971-7978.
-
(1994)
Biochemistry
, vol.33
, pp. 7971-7978
-
-
Collinson, I.R.1
Runswick, M.J.2
Buchanan, S.K.3
Fearnley, I.M.4
Skehel, J.M.5
van Raaij, M.J.6
Griffiths, D.E.7
Walker, J.E.8
-
22
-
-
0034674060
-
The cytochrome bc1 and cytochrome c oxidase complexes associate to form a single supracomplex in yeast mitochondria
-
Cruciat C.M., Brunner S., Baumann F., Neupert W., Stuart R.A. The cytochrome bc1 and cytochrome c oxidase complexes associate to form a single supracomplex in yeast mitochondria. J. Biol. Chem. 2000, 275:18093-18098.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 18093-18098
-
-
Cruciat, C.M.1
Brunner, S.2
Baumann, F.3
Neupert, W.4
Stuart, R.A.5
-
23
-
-
0028047203
-
Molecular cloning and nucleotide sequences of cDNAs encoding subunits I, II, and IX of Euglena gracilis mitochondrial complex III
-
Cui J.Y., Mukai K., Saeki K., Matsubara H. Molecular cloning and nucleotide sequences of cDNAs encoding subunits I, II, and IX of Euglena gracilis mitochondrial complex III. J. Biochem. 1994, 115:98-107.
-
(1994)
J. Biochem.
, vol.115
, pp. 98-107
-
-
Cui, J.Y.1
Mukai, K.2
Saeki, K.3
Matsubara, H.4
-
24
-
-
84865281896
-
Structure of the yeast F1Fo-ATP synthase dimer and its role in shaping the mitochondrial cristae
-
Davies K.M., Anselmi C., Wittig I., Faraldo-Gomez J.D., Kuhlbrandt W. Structure of the yeast F1Fo-ATP synthase dimer and its role in shaping the mitochondrial cristae. Proc. Natl. Acad. Sci. U. S. A. 2012, 109:13602-13607.
-
(2012)
Proc. Natl. Acad. Sci. U. S. A.
, vol.109
, pp. 13602-13607
-
-
Davies, K.M.1
Anselmi, C.2
Wittig, I.3
Faraldo-Gomez, J.D.4
Kuhlbrandt, W.5
-
25
-
-
0032726044
-
Alteration of dark respiration and reduction of phototrophic growth in a mitochondrial DNA deletion mutant of Chlamydomonas lacking cob, nd4, and the 3' end of nd5
-
Duby F., Matagne R.F. Alteration of dark respiration and reduction of phototrophic growth in a mitochondrial DNA deletion mutant of Chlamydomonas lacking cob, nd4, and the 3' end of nd5. Plant Cell 1999, 11:115-125.
-
(1999)
Plant Cell
, vol.11
, pp. 115-125
-
-
Duby, F.1
Matagne, R.F.2
-
26
-
-
14744270722
-
Structure of a mitochondrial supercomplex formed by respiratory-chain complexes I and III
-
Dudkina N.V., Eubel H., Keegstra W., Boekema E.J., Braun H.P. Structure of a mitochondrial supercomplex formed by respiratory-chain complexes I and III. Proc. Natl. Acad. Sci. U. S. A. 2005, 102:3225-3229.
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 3225-3229
-
-
Dudkina, N.V.1
Eubel, H.2
Keegstra, W.3
Boekema, E.J.4
Braun, H.P.5
-
27
-
-
33646934708
-
Characterization of dimeric ATP synthase and cristae membrane ultrastructure from Saccharomyces and Polytomella mitochondria
-
Dudkina N.V., Sunderhaus S., Braun H.P., Boekema E.J. Characterization of dimeric ATP synthase and cristae membrane ultrastructure from Saccharomyces and Polytomella mitochondria. FEBS Lett. 2006, 580:3427-3432.
-
(2006)
FEBS Lett.
, vol.580
, pp. 3427-3432
-
-
Dudkina, N.V.1
Sunderhaus, S.2
Braun, H.P.3
Boekema, E.J.4
-
28
-
-
1842429937
-
Ancient invasions: from endosymbionts to organelles
-
Dyall S.D., Brown M.T., Johnson P.J. Ancient invasions: from endosymbionts to organelles. Science 2004, 304:253-257.
-
(2004)
Science
, vol.304
, pp. 253-257
-
-
Dyall, S.D.1
Brown, M.T.2
Johnson, P.J.3
-
29
-
-
68849131258
-
HaMStR: profile hidden Markov model based search for orthologs in ESTs
-
Ebersberger I., Strauss S., von Haeseler A. HaMStR: profile hidden Markov model based search for orthologs in ESTs. BMC Evol. Biol. 2009, 9:157.
-
(2009)
BMC Evol. Biol.
, vol.9
, pp. 157
-
-
Ebersberger, I.1
Strauss, S.2
von Haeseler, A.3
-
30
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, 32:1792-1797.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
31
-
-
0037022830
-
Novel FMN-containing rotenone-insensitive NADH dehydrogenase from Trypanosoma brucei mitochondria: isolation and characterization
-
Fang J., Beattie D.S. Novel FMN-containing rotenone-insensitive NADH dehydrogenase from Trypanosoma brucei mitochondria: isolation and characterization. Biochemistry 2002, 41:3065-3072.
-
(2002)
Biochemistry
, vol.41
, pp. 3065-3072
-
-
Fang, J.1
Beattie, D.S.2
-
32
-
-
0000461280
-
Confidence limits on phylogenies: an approach using the bootstrap
-
Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 783-791.
-
(1985)
Evolution
-
-
Felsenstein, J.1
-
33
-
-
33746108545
-
Open software for biologists: from famine to feast
-
Field D., Tiwari B., Booth T., Houten S., Swan D., Bertrand N., Thurston M. Open software for biologists: from famine to feast. Nat. Biotechnol. 2006, 24:801-803.
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 801-803
-
-
Field, D.1
Tiwari, B.2
Booth, T.3
Houten, S.4
Swan, D.5
Bertrand, N.6
Thurston, M.7
-
34
-
-
84857570169
-
Using OrthoMCL to assign proteins to OrthoMCL-DB groups or to cluster proteomes into new ortholog groups
-
(Chapter 6, Unit 6)
-
Fischer S., Brunk B.P., Chen F., Gao X., Harb O.S., Iodice J.B., Shanmugam D., Roos D.S., Stoeckert C.J. Using OrthoMCL to assign proteins to OrthoMCL-DB groups or to cluster proteomes into new ortholog groups. Curr. Protoc. Bioinformatics 2011, 12:11-19. (Chapter 6, Unit 6).
-
(2011)
Curr. Protoc. Bioinformatics
, vol.12
, pp. 11-19
-
-
Fischer, S.1
Brunk, B.P.2
Chen, F.3
Gao, X.4
Harb, O.S.5
Iodice, J.B.6
Shanmugam, D.7
Roos, D.S.8
Stoeckert, C.J.9
-
35
-
-
27544434211
-
Lineage-specific gene loss following mitochondrial endosymbiosis and its potential for function prediction in eukaryotes
-
Gabaldon T., Huynen M.A. Lineage-specific gene loss following mitochondrial endosymbiosis and its potential for function prediction in eukaryotes. Bioinformatics 2005, 21(Suppl. 2):ii144-ii150.
-
(2005)
Bioinformatics
, vol.21
, pp. ii144-ii150
-
-
Gabaldon, T.1
Huynen, M.A.2
-
36
-
-
84876665869
-
Functional and evolutionary implications of gene orthology
-
Gabaldon T., Koonin E.V. Functional and evolutionary implications of gene orthology. Nat. Rev. Genet. 2013, 14:360-366.
-
(2013)
Nat. Rev. Genet.
, vol.14
, pp. 360-366
-
-
Gabaldon, T.1
Koonin, E.V.2
-
37
-
-
72649085678
-
A split and rearranged nuclear gene encoding the iron-sulfur subunit of mitochondrial succinate dehydrogenase in Euglenozoa
-
Gawryluk R.M., Gray M.W. A split and rearranged nuclear gene encoding the iron-sulfur subunit of mitochondrial succinate dehydrogenase in Euglenozoa. BMC Res. Notes 2009, 2:16.
-
(2009)
BMC Res. Notes
, vol.2
, pp. 16
-
-
Gawryluk, R.M.1
Gray, M.W.2
-
38
-
-
77953335870
-
Evidence for an early evolutionary emergence of gamma-type carbonic anhydrases as components of mitochondrial respiratory complex I
-
Gawryluk R.M., Gray M.W. Evidence for an early evolutionary emergence of gamma-type carbonic anhydrases as components of mitochondrial respiratory complex I. BMC Evol. Biol. 2010, 10:176.
-
(2010)
BMC Evol. Biol.
, vol.10
, pp. 176
-
-
Gawryluk, R.M.1
Gray, M.W.2
-
39
-
-
84865679778
-
Composition of the mitochondrial electron transport chain in Acanthamoeba castellanii: structural and evolutionary insights
-
Gawryluk R.M., Chisholm K.A., Pinto D.M., Gray M.W. Composition of the mitochondrial electron transport chain in Acanthamoeba castellanii: structural and evolutionary insights. Biochim. Biophys. Acta 2012, 1817:2027-2037.
-
(2012)
Biochim. Biophys. Acta
, vol.1817
, pp. 2027-2037
-
-
Gawryluk, R.M.1
Chisholm, K.A.2
Pinto, D.M.3
Gray, M.W.4
-
40
-
-
0019485803
-
The chloroplasts of some algal groups may have evolved from endosymbiotic eukaryotic algae
-
Gibbs S.P. The chloroplasts of some algal groups may have evolved from endosymbiotic eukaryotic algae. Ann. N. Y. Acad. Sci. 1981, 361:193-208.
-
(1981)
Ann. N. Y. Acad. Sci.
, vol.361
, pp. 193-208
-
-
Gibbs, S.P.1
-
41
-
-
74549125386
-
SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building
-
Gouy M., Guindon S., Gascuel O. SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol. Biol. Evol. 2010, 27:221-224.
-
(2010)
Mol. Biol. Evol.
, vol.27
, pp. 221-224
-
-
Gouy, M.1
Guindon, S.2
Gascuel, O.3
-
44
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
-
Guindon S., Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 2010, 59:307-321.
-
(2010)
Syst. Biol.
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
45
-
-
62649113993
-
Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups"
-
Hampl V., Hug L., Leigh J.W., Dacks J.B., Lang B.F., Simpson A.G., Roger A.J. Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups". Proc. Natl. Acad. Sci. U. S. A. 2009, 106:3859-3864.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 3859-3864
-
-
Hampl, V.1
Hug, L.2
Leigh, J.W.3
Dacks, J.B.4
Lang, B.F.5
Simpson, A.G.6
Roger, A.J.7
-
47
-
-
0037430978
-
The products of the mitochondrial orf25 and orfB genes are FO components in the plant F1FO ATP synthase
-
Heazlewood J.L., Whelan J., Millar A.H. The products of the mitochondrial orf25 and orfB genes are FO components in the plant F1FO ATP synthase. FEBS Lett. 2003, 540:201-205.
-
(2003)
FEBS Lett.
, vol.540
, pp. 201-205
-
-
Heazlewood, J.L.1
Whelan, J.2
Millar, A.H.3
-
48
-
-
0032849859
-
CAP3: a DNA sequence assembly program
-
Huang X., Madan A. CAP3: a DNA sequence assembly program. Genome Res. 1999, 9:868-877.
-
(1999)
Genome Res.
, vol.9
, pp. 868-877
-
-
Huang, X.1
Madan, A.2
-
50
-
-
0020724790
-
Separation of mammalian cytochrome c oxidase into 13 polypeptides by a sodium dodecyl sulfate-gel electrophoretic procedure
-
Kadenbach B., Jarausch J., Hartmann R., Merle P. Separation of mammalian cytochrome c oxidase into 13 polypeptides by a sodium dodecyl sulfate-gel electrophoretic procedure. Anal. Biochem. 1983, 129:517-521.
-
(1983)
Anal. Biochem.
, vol.129
, pp. 517-521
-
-
Kadenbach, B.1
Jarausch, J.2
Hartmann, R.3
Merle, P.4
-
51
-
-
77953226426
-
Internal architecture of mitochondrial complex I from Arabidopsis thaliana
-
Klodmann J., Sunderhaus S., Nimtz M., Jansch L., Braun H.P. Internal architecture of mitochondrial complex I from Arabidopsis thaliana. Plant Cell 2010, 22:797-810.
-
(2010)
Plant Cell
, vol.22
, pp. 797-810
-
-
Klodmann, J.1
Sunderhaus, S.2
Nimtz, M.3
Jansch, L.4
Braun, H.P.5
-
52
-
-
0034992826
-
The closest BLAST hit is often not the nearest neighbor
-
Koski L.B., Golding G.B. The closest BLAST hit is often not the nearest neighbor. J. Mol. Evol. 2001, 52:540-542.
-
(2001)
J. Mol. Evol.
, vol.52
, pp. 540-542
-
-
Koski, L.B.1
Golding, G.B.2
-
53
-
-
0031007907
-
An ancestral mitochondrial DNA resembling a eubacterial genome in miniature
-
Lang B.F., Burger G., O'Kelly C.J., Cedergren R., Golding G.B., Lemieux C., Sankoff D., Turmel M., Gray M.W. An ancestral mitochondrial DNA resembling a eubacterial genome in miniature. Nature 1997, 387:493-497.
-
(1997)
Nature
, vol.387
, pp. 493-497
-
-
Lang, B.F.1
Burger, G.2
O'Kelly, C.J.3
Cedergren, R.4
Golding, G.B.5
Lemieux, C.6
Sankoff, D.7
Turmel, M.8
Gray, M.W.9
-
54
-
-
77953741665
-
Atypical subunit composition of the chlorophycean mitochondrial F1FO-ATP synthase and role of Asa7 protein in stability and oligomycin resistance of the enzyme
-
Lapaille M., Escobar-Ramirez A., Degand H., Baurain D., Rodriguez-Salinas E., Coosemans N., Boutry M., Gonzalez-Halphen D., Remacle C., Cardol P. Atypical subunit composition of the chlorophycean mitochondrial F1FO-ATP synthase and role of Asa7 protein in stability and oligomycin resistance of the enzyme. Mol. Biol. Evol. 2010, 27:1630-1644.
-
(2010)
Mol. Biol. Evol.
, vol.27
, pp. 1630-1644
-
-
Lapaille, M.1
Escobar-Ramirez, A.2
Degand, H.3
Baurain, D.4
Rodriguez-Salinas, E.5
Coosemans, N.6
Boutry, M.7
Gonzalez-Halphen, D.8
Remacle, C.9
Cardol, P.10
-
55
-
-
45849154166
-
An improved general amino acid replacement matrix
-
Le S.Q., Gascuel O. An improved general amino acid replacement matrix. Mol. Biol. Evol. 2008, 25:1307-1320.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 1307-1320
-
-
Le, S.Q.1
Gascuel, O.2
-
56
-
-
0141519279
-
OrthoMCL: identification of ortholog groups for eukaryotic genomes
-
Li L., Stoeckert C.J., Roos D.S. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res. 2003, 13:2178-2189.
-
(2003)
Genome Res.
, vol.13
, pp. 2178-2189
-
-
Li, L.1
Stoeckert, C.J.2
Roos, D.S.3
-
57
-
-
2642689666
-
The hydrogen hypothesis for the first eukaryote
-
Martin W., Muller M. The hydrogen hypothesis for the first eukaryote. Nature 1998, 392:37-41.
-
(1998)
Nature
, vol.392
, pp. 37-41
-
-
Martin, W.1
Muller, M.2
-
58
-
-
0016169834
-
Alcohol dehydrogenases of Euglena gracilis, strain Z
-
Mego J.L., Farb R.M. Alcohol dehydrogenases of Euglena gracilis, strain Z. Biochim. Biophys. Acta 1974, 350:237-239.
-
(1974)
Biochim. Biophys. Acta
, vol.350
, pp. 237-239
-
-
Mego, J.L.1
Farb, R.M.2
-
59
-
-
0142152465
-
Arabidopsis genes encoding mitochondrial type II NAD(P)H dehydrogenases have different evolutionary origin and show distinct responses to light
-
Michalecka A.M., Svensson A.S., Johansson F.I., Agius S.C., Johanson U., Brennicke A., Binder S., Rasmusson A.G. Arabidopsis genes encoding mitochondrial type II NAD(P)H dehydrogenases have different evolutionary origin and show distinct responses to light. Plant Physiol. 2003, 133:642-652.
-
(2003)
Plant Physiol.
, vol.133
, pp. 642-652
-
-
Michalecka, A.M.1
Svensson, A.S.2
Johansson, F.I.3
Agius, S.C.4
Johanson, U.5
Brennicke, A.6
Binder, S.7
Rasmusson, A.G.8
-
60
-
-
12344323931
-
Mitochondrial cytochrome c oxidase and succinate dehydrogenase complexes contain plant specific subunits
-
Millar A.H., Eubel H., Jansch L., Kruft V., Heazlewood J.L., Braun H.P. Mitochondrial cytochrome c oxidase and succinate dehydrogenase complexes contain plant specific subunits. Plant Mol. Biol. 2004, 56:77-90.
-
(2004)
Plant Mol. Biol.
, vol.56
, pp. 77-90
-
-
Millar, A.H.1
Eubel, H.2
Jansch, L.3
Kruft, V.4
Heazlewood, J.L.5
Braun, H.P.6
-
62
-
-
65449123898
-
Novel mitochondrial complex II isolated from Trypanosoma cruzi is composed of 12 peptides including a heterodimeric Ip subunit
-
Morales J., Mogi T., Mineki S., Takashima E., Mineki R., Hirawake H., Sakamoto K., Omura S., Kita K. Novel mitochondrial complex II isolated from Trypanosoma cruzi is composed of 12 peptides including a heterodimeric Ip subunit. J. Biol. Chem. 2009, 284:7255-7263.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 7255-7263
-
-
Morales, J.1
Mogi, T.2
Mineki, S.3
Takashima, E.4
Mineki, R.5
Hirawake, H.6
Sakamoto, K.7
Omura, S.8
Kita, K.9
-
63
-
-
0001527861
-
Preparation of coupled mitochondria from Euglena by sonication
-
Moreno-Sánchez R., Raya J.C. Preparation of coupled mitochondria from Euglena by sonication. Plant Sci. 1987, 48:151-157.
-
(1987)
Plant Sci.
, vol.48
, pp. 151-157
-
-
Moreno-Sánchez, R.1
Raya, J.C.2
-
64
-
-
0343091253
-
Oxidative phosphorylation supported by an alternative respiratory pathway in mitochondria from Euglena
-
Moreno-Sánchez R., Covian R., Jasso-Chavez R., Rodriguez-Enriquez S., Pacheco-Moises F., Torres-Marquez M.E. Oxidative phosphorylation supported by an alternative respiratory pathway in mitochondria from Euglena. Biochim. Biophys. Acta 2000, 1457:200-210.
-
(2000)
Biochim. Biophys. Acta
, vol.1457
, pp. 200-210
-
-
Moreno-Sánchez, R.1
Covian, R.2
Jasso-Chavez, R.3
Rodriguez-Enriquez, S.4
Pacheco-Moises, F.5
Torres-Marquez, M.E.6
-
65
-
-
41549134681
-
Mitochondrial complexes in Trypanosoma brucei: a novel complex and a unique oxidoreductase complex
-
Panigrahi A.K., Zikova A., Dalley R.A., Acestor N., Ogata Y., Anupama A., Myler P.J., Stuart K.D. Mitochondrial complexes in Trypanosoma brucei: a novel complex and a unique oxidoreductase complex. Mol. Cell. Proteomics 2008, 7:534-545.
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 534-545
-
-
Panigrahi, A.K.1
Zikova, A.2
Dalley, R.A.3
Acestor, N.4
Ogata, Y.5
Anupama, A.6
Myler, P.J.7
Stuart, K.D.8
-
66
-
-
0001728083
-
Partial resolution of the enzymes catalyzing oxidative phosphorylation. I. Purification and properties of soluble dinitrophenol-stimulated adenosine triphosphatase
-
Pullman M.E., Penefsky H.S., Datta A., Racker E. Partial resolution of the enzymes catalyzing oxidative phosphorylation. I. Purification and properties of soluble dinitrophenol-stimulated adenosine triphosphatase. J. Biol. Chem. 1960, 235:3322-3329.
-
(1960)
J. Biol. Chem.
, vol.235
, pp. 3322-3329
-
-
Pullman, M.E.1
Penefsky, H.S.2
Datta, A.3
Racker, E.4
-
67
-
-
33751265748
-
The diversity of the DnaJ/Hsp40 family, the crucial partners for Hsp70 chaperones
-
Qiu X.B., Shao Y.M., Miao S., Wang L. The diversity of the DnaJ/Hsp40 family, the crucial partners for Hsp70 chaperones. Cell. Mol. Life Sci. 2006, 63:2560-2570.
-
(2006)
Cell. Mol. Life Sci.
, vol.63
, pp. 2560-2570
-
-
Qiu, X.B.1
Shao, Y.M.2
Miao, S.3
Wang, L.4
-
68
-
-
0034917124
-
Mutants of Chlamydomonas reinhardtii deficient in mitochondrial complex I: characterization of two mutations affecting the nd1 coding sequence
-
Remacle C., Baurain D., Cardol P., Matagne R.F. Mutants of Chlamydomonas reinhardtii deficient in mitochondrial complex I: characterization of two mutations affecting the nd1 coding sequence. Genetics 2001, 158:1051-1060.
-
(2001)
Genetics
, vol.158
, pp. 1051-1060
-
-
Remacle, C.1
Baurain, D.2
Cardol, P.3
Matagne, R.F.4
-
69
-
-
33749162691
-
Metazoan OXPHOS gene families: evolutionary forces at the level of mitochondrial and nuclear genomes
-
Saccone C., Lanave C., De Grassi A. Metazoan OXPHOS gene families: evolutionary forces at the level of mitochondrial and nuclear genomes. Biochim. Biophys. Acta 2006, 1757:1171-1178.
-
(2006)
Biochim. Biophys. Acta
, vol.1757
, pp. 1171-1178
-
-
Saccone, C.1
Lanave, C.2
De Grassi, A.3
-
70
-
-
0038230469
-
Supercomplexes in the respiratory chains of yeast and mammalian mitochondria
-
Schagger H., Pfeiffer K. Supercomplexes in the respiratory chains of yeast and mammalian mitochondria. EMBO J. 2000, 19:1777-1783.
-
(2000)
EMBO J.
, vol.19
, pp. 1777-1783
-
-
Schagger, H.1
Pfeiffer, K.2
-
71
-
-
0026409298
-
Blue native electrophoresis for isolation of membrane protein complexes in enzymatically active form
-
Schagger H., von Jagow G. Blue native electrophoresis for isolation of membrane protein complexes in enzymatically active form. Anal. Biochem. 1991, 199:223-231.
-
(1991)
Anal. Biochem.
, vol.199
, pp. 223-231
-
-
Schagger, H.1
von Jagow, G.2
-
72
-
-
0014938737
-
An inducible alternate terminal oxidase in Euglena gracilis mitochondria
-
Sharpless T.K., Butow R.A. An inducible alternate terminal oxidase in Euglena gracilis mitochondria. J. Biol. Chem. 1970, 245:58-70.
-
(1970)
J. Biol. Chem.
, vol.245
, pp. 58-70
-
-
Sharpless, T.K.1
Butow, R.A.2
-
73
-
-
0014938745
-
Phosphorylation sites, cytochrome complement, and alternate pathways of coupled electron transport in Euglena gracilis mitochondria
-
Sharpless T.K., Butow R.A. Phosphorylation sites, cytochrome complement, and alternate pathways of coupled electron transport in Euglena gracilis mitochondria. J. Biol. Chem. 1970, 245:50-57.
-
(1970)
J. Biol. Chem.
, vol.245
, pp. 50-57
-
-
Sharpless, T.K.1
Butow, R.A.2
-
74
-
-
80054078476
-
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
-
Sievers F., Wilm A., Dineen D., Gibson T.J., Karplus K., Li W., Lopez R., McWilliam H., Remmert M., Soding J., Thompson J.D., Higgins D.G. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol. Syst. Biol. 2011, 7:539.
-
(2011)
Mol. Syst. Biol.
, vol.7
, pp. 539
-
-
Sievers, F.1
Wilm, A.2
Dineen, D.3
Gibson, T.J.4
Karplus, K.5
Li, W.6
Lopez, R.7
McWilliam, H.8
Remmert, M.9
Soding, J.10
Thompson, J.D.11
Higgins, D.G.12
-
75
-
-
0030666484
-
The identity and composition of the Euglenozoa
-
Simpson A.G.B. The identity and composition of the Euglenozoa. Arch. Protistenkd. 1997, 148:10.
-
(1997)
Arch. Protistenkd.
, vol.148
, pp. 10
-
-
Simpson, A.G.B.1
-
76
-
-
18644368714
-
The BioPerl toolkit: Perl modules for the life sciences
-
Stajich J.E., Block D., Boulez K., Brenner S.E., Chervitz S.A., Dagdigian C., Fuellen G., Gilbert J.G., Korf I., Lapp H., Lehvaslaiho H., Matsalla C., Mungall C.J., Osborne B.I., Pocock M.R., Schattner P., Senger M., Stein L.D., Stupka E., Wilkinson M.D., Birney E. The BioPerl toolkit: Perl modules for the life sciences. Genome Res. 2002, 12:1611-1618.
-
(2002)
Genome Res.
, vol.12
, pp. 1611-1618
-
-
Stajich, J.E.1
Block, D.2
Boulez, K.3
Brenner, S.E.4
Chervitz, S.A.5
Dagdigian, C.6
Fuellen, G.7
Gilbert, J.G.8
Korf, I.9
Lapp, H.10
Lehvaslaiho, H.11
Matsalla, C.12
Mungall, C.J.13
Osborne, B.I.14
Pocock, M.R.15
Schattner, P.16
Senger, M.17
Stein, L.D.18
Stupka, E.19
Wilkinson, M.D.20
Birney, E.21
more..
-
77
-
-
33646365010
-
Carbonic anhydrase subunits form a matrix-exposed domain attached to the membrane arm of mitochondrial complex I in plants
-
Sunderhaus S., Dudkina N.V., Jansch L., Klodmann J., Heinemeyer J., Perales M., Zabaleta E., Boekema E.J., Braun H.P. Carbonic anhydrase subunits form a matrix-exposed domain attached to the membrane arm of mitochondrial complex I in plants. J. Biol. Chem. 2006, 281:6482-6488.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 6482-6488
-
-
Sunderhaus, S.1
Dudkina, N.V.2
Jansch, L.3
Klodmann, J.4
Heinemeyer, J.5
Perales, M.6
Zabaleta, E.7
Boekema, E.J.8
Braun, H.P.9
-
78
-
-
0029942862
-
The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8A
-
Tsukihara T., Aoyama H., Yamashita E., Tomizaki T., Yamaguchi H., Shinzawa-Itoh K., Nakashima R., Yaono R., Yoshikawa S. The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8A. Science 1996, 272:1136-1144.
-
(1996)
Science
, vol.272
, pp. 1136-1144
-
-
Tsukihara, T.1
Aoyama, H.2
Yamashita, E.3
Tomizaki, T.4
Yamaguchi, H.5
Shinzawa-Itoh, K.6
Nakashima, R.7
Yaono, R.8
Yoshikawa, S.9
-
79
-
-
60149094050
-
The chloroplast genomes of the green algae Pyramimonas, Monomastix, and Pycnococcus shed new light on the evolutionary history of prasinophytes and the origin of the secondary chloroplasts of euglenids
-
Turmel M., Gagnon M.C., O'Kelly C.J., Otis C., Lemieux C. The chloroplast genomes of the green algae Pyramimonas, Monomastix, and Pycnococcus shed new light on the evolutionary history of prasinophytes and the origin of the secondary chloroplasts of euglenids. Mol. Biol. Evol. 2009, 26:631-648.
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 631-648
-
-
Turmel, M.1
Gagnon, M.C.2
O'Kelly, C.J.3
Otis, C.4
Lemieux, C.5
-
80
-
-
70450260721
-
Alternative oxidase: a target and regulator of stress responses
-
Van Aken O., Giraud E., Clifton R., Whelan J. Alternative oxidase: a target and regulator of stress responses. Physiol. Plant. 2009, 137:354-361.
-
(2009)
Physiol. Plant.
, vol.137
, pp. 354-361
-
-
Van Aken, O.1
Giraud, E.2
Clifton, R.3
Whelan, J.4
-
81
-
-
33845662710
-
The mitochondrial ATP synthase of chlorophycean algae contains eight subunits of unknown origin involved in the formation of an atypical stator-stalk and in the dimerization of the complex
-
Vazquez-Acevedo M., Cardol P., Cano-Estrada A., Lapaille M., Remacle C., Gonzalez-Halphen D. The mitochondrial ATP synthase of chlorophycean algae contains eight subunits of unknown origin involved in the formation of an atypical stator-stalk and in the dimerization of the complex. J. Bioenerg. Biomembr. 2006, 38:271-282.
-
(2006)
J. Bioenerg. Biomembr.
, vol.38
, pp. 271-282
-
-
Vazquez-Acevedo, M.1
Cardol, P.2
Cano-Estrada, A.3
Lapaille, M.4
Remacle, C.5
Gonzalez-Halphen, D.6
-
82
-
-
0034530609
-
The Saccharomyces cerevisiae ATP synthase
-
Velours J., Arselin G. The Saccharomyces cerevisiae ATP synthase. J. Bioenerg. Biomembr. 2000, 32:383-390.
-
(2000)
J. Bioenerg. Biomembr.
, vol.32
, pp. 383-390
-
-
Velours, J.1
Arselin, G.2
-
83
-
-
60649107871
-
The fully-active and structurally-stable form of the mitochondrial ATP synthase of Polytomella sp. is dimeric
-
Villavicencio-Queijeiro A., Vazquez-Acevedo M., Cano-Estrada A., Zarco-Zavala M., Tuena de Gomez M., Mignaco J.A., Freire M.M., Scofano H.M., Foguel D., Cardol P., Remacle C., Gonzalez-Halphen D. The fully-active and structurally-stable form of the mitochondrial ATP synthase of Polytomella sp. is dimeric. J. Bioenerg. Biomembr. 2009, 41:1-13.
-
(2009)
J. Bioenerg. Biomembr.
, vol.41
, pp. 1-13
-
-
Villavicencio-Queijeiro, A.1
Vazquez-Acevedo, M.2
Cano-Estrada, A.3
Zarco-Zavala, M.4
Tuena de Gomez, M.5
Mignaco, J.A.6
Freire, M.M.7
Scofano, H.M.8
Foguel, D.9
Cardol, P.10
Remacle, C.11
Gonzalez-Halphen, D.12
-
84
-
-
0025923549
-
Identification of the subunits of F1F0-ATPase from bovine heart mitochondria
-
Walker J.E., Lutter R., Dupuis A., Runswick M.J. Identification of the subunits of F1F0-ATPase from bovine heart mitochondria. Biochemistry 1991, 30:5369-5378.
-
(1991)
Biochemistry
, vol.30
, pp. 5369-5378
-
-
Walker, J.E.1
Lutter, R.2
Dupuis, A.3
Runswick, M.J.4
-
85
-
-
84856289301
-
Eukaryotic systematics: a user's guide for cell biologists and parasitologists
-
Walker G., Dorrell R.G., Schlacht A., Dacks J.B. Eukaryotic systematics: a user's guide for cell biologists and parasitologists. Parasitology 2011, 138:1638-1663.
-
(2011)
Parasitology
, vol.138
, pp. 1638-1663
-
-
Walker, G.1
Dorrell, R.G.2
Schlacht, A.3
Dacks, J.B.4
-
86
-
-
65449188232
-
Jalview Version 2-a multiple sequence alignment editor and analysis workbench
-
Waterhouse A.M., Procter J.B., Martin D.M., Clamp M., Barton G.J. Jalview Version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics 2009, 25:1189-1191.
-
(2009)
Bioinformatics
, vol.25
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.3
Clamp, M.4
Barton, G.J.5
-
87
-
-
57749169251
-
The extent of acetate and ethanol oxidation by Euglena gracilis
-
Wilson B.W., Danforth W.F. The extent of acetate and ethanol oxidation by Euglena gracilis. J. Gen. Microbiol. 1958, 18:535-542.
-
(1958)
J. Gen. Microbiol.
, vol.18
, pp. 535-542
-
-
Wilson, B.W.1
Danforth, W.F.2
-
88
-
-
0027132974
-
Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites
-
Yang Z. Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol. Biol. Evol. 1993, 10:1396-1401.
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 1396-1401
-
-
Yang, Z.1
-
89
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino D.R., Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 2008, 18:821-829.
-
(2008)
Genome Res.
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
90
-
-
84861386206
-
Collodictyon-an ancient lineage in the tree of eukaryotes
-
Zhao S., Burki F., Brate J., Keeling P.J., Klaveness D., Shalchian-Tabrizi K. Collodictyon-an ancient lineage in the tree of eukaryotes. Mol. Biol. Evol. 2012, 29:1557-1568.
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 1557-1568
-
-
Zhao, S.1
Burki, F.2
Brate, J.3
Keeling, P.J.4
Klaveness, D.5
Shalchian-Tabrizi, K.6
-
91
-
-
55749107476
-
Structural and functional association of Trypanosoma brucei MIX protein with cytochrome c oxidase complex
-
Zikova A., Panigrahi A.K., Uboldi A.D., Dalley R.A., Handman E., Stuart K. Structural and functional association of Trypanosoma brucei MIX protein with cytochrome c oxidase complex. Eukaryot. Cell 2008, 7:1994-2003.
-
(2008)
Eukaryot. Cell
, vol.7
, pp. 1994-2003
-
-
Zikova, A.1
Panigrahi, A.K.2
Uboldi, A.D.3
Dalley, R.A.4
Handman, E.5
Stuart, K.6
-
92
-
-
67249130258
-
The F(0)F(1)-ATP synthase complex contains novel subunits and is essential for procyclic Trypanosoma brucei
-
Zikova A., Schnaufer A., Dalley R.A., Panigrahi A.K., Stuart K.D. The F(0)F(1)-ATP synthase complex contains novel subunits and is essential for procyclic Trypanosoma brucei. PLoS Pathog. 2009, 5:e1000436.
-
(2009)
PLoS Pathog.
, vol.5
, pp. e1000436
-
-
Zikova, A.1
Schnaufer, A.2
Dalley, R.A.3
Panigrahi, A.K.4
Stuart, K.D.5
|