Biofilms of Clostridium species

Anaerobe

Volumn 30, Issue , 2014, Pages 193-198

  Pantaléon, Véronique ^a   Bouttier, Sylvie ^a   Soavelomandroso, Anna Philibertine ^a   Janoir, Claire ^a   Candela, Thomas ^a  

^a University Paris Sud   (France)

Author keywords

Biofilm; Clostridium difficile; Clostridium perfringens; Clostridium species; Regulation

Indexed keywords

ARTICLE; BACTERIAL SURVIVAL; BIOFILM; CLOSTRIDIUM; CLOSTRIDIUM ACETOBUTYLICUM; CLOSTRIDIUM BARATII; CLOSTRIDIUM BIFERMENTANS; CLOSTRIDIUM BOTULINUM; CLOSTRIDIUM CELERECRESCENS; CLOSTRIDIUM CELLULOLYTICUM; CLOSTRIDIUM CHARTATABIDUM; CLOSTRIDIUM CLOSTRIDIOFORME; CLOSTRIDIUM DIFFICILE; CLOSTRIDIUM DRAKEI; CLOSTRIDIUM FALLAX; CLOSTRIDIUM LJUNGDAHLII; CLOSTRIDIUM MALENOMINATUM; CLOSTRIDIUM PERFRINGENS; CLOSTRIDIUM PHYTOFERMENTANS; CLOSTRIDIUM SORDELLII; CLOSTRIDIUM THERMOCELLUM; ENVIRONMENTAL FACTOR; IN VITRO STUDY; METAGENOMICS; MICROBIAL COMMUNITY; MICROFLORA; NONHUMAN; SPECIES DIFFERENCE; SPOROGENESIS; ANIMAL; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; MAMMAL; MICROBIOLOGY; PEPTOCLOSTRIDIUM DIFFICILE; PHYSIOLOGY;

CLOSTRIDIUM; CLOSTRIDIUM DIFFICILE; CLOSTRIDIUM PERFRINGENS;

ANIMALS; BIOFILMS; CLOSTRIDIUM DIFFICILE; CLOSTRIDIUM PERFRINGENS; ENVIRONMENTAL MICROBIOLOGY; GENE EXPRESSION REGULATION, BACTERIAL; MAMMALS;

EID: 84913590107     PISSN: 10759964     EISSN: 10958274     Source Type: Journal    
DOI: 10.1016/j.anaerobe.2014.09.010     Document Type: Article

References (57)

1. Hall-Stoodley L., Costerton J.W., Stoodley P. Bacterial biofilms: from the natural environment to infectious diseases. Nat Rev Microbiol 2004, 2:95-108.
2. ® of systematic bacteriology 2009, springer. G.M.G. Paul De Vos, D. Jones, N.R. Krieg, W. Ludwig, F.A. Rainey, K.-H. Schleifer (Eds.).
3. Ishii S., Shimoyama T., Hotta Y., Watanabe K. Characterization of a filamentous biofilm community established in a cellulose-fed microbial fuel cell. BMC Microbiol 2008, 8:6.
4. Rademacher A., Zakrzewski M., Schluter A., Schonberg M., Szczepanowski R., Goesmann A., et al. Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing. FEMS Microbiol Ecol 2012, 79:785-799.
5. Biswas K., Turner S.J. Microbial community composition and dynamics of moving bed biofilm reactor systems treating municipal sewage. Appl Environ Microbiol 2012, 78:855-864.
6. Zhang F., Ding J., Shen N., Zhang Y., Ding Z., Dai K., et al. In situ hydrogen utilization for high fraction acetate production in mixed culture hollow-fiber membrane biofilm reactor. Appl Microbiol Biotechnol 2013, 97:10233-10240.
7. Liu D., Chen Y., Ding F.Y., Zhao T., Wu J.L., Guo T., et al. Biobutanol production in a Clostridium acetobutylicum biofilm reactor integrated with simultaneous product recovery by adsorption. Biotechnol Biofuels 2014, 7:5.
8. Napoli F., Olivieri G., Russo M.E., Marzocchella A., Salatino P. Butanol production by Clostridium acetobutylicum in a continuous packed bed reactor. JInd Microbiol Biotechnol 2010, 37:603-608.
9. Raganati F., Olivieri G., Procentese A., Russo M.E., Salatino P., Marzocchella A. Butanol production by bioconversion of cheese whey in a continuous packed bed reactor. Bioresour Technol 2013, 138:259-265.
10. Jain A., Morlok C.K., Henson J.M. Comparison of solid-state and submerged-state fermentation for the bioprocessing of switchgrass to ethanol and acetate by Clostridium phytofermentans. Appl Microbiol Biotechnol 2013, 97:905-917.
11. Dumitrache A., Wolfaardt G., Allen G., Liss S.N., Lynd L.R. Form and function of Clostridium thermocellum biofilms. Appl Environ Microbiol 2013, 79:231-239.
12. Wang Z.W., Lee S.H., Elkins J.G., Morrell-Falvey J.L. Spatial and temporal dynamics of cellulose degradation and biofilm formation by Caldicellulosiruptor obsidiansis and Clostridium thermocellum. AMB Express 2011, 1:30.
13. Swidsinski A., Weber J., Loening-Baucke V., Hale L.P., Lochs H. Spatial organization and composition of the mucosal flora in patients with inflammatory bowel disease. JClin Microbiol 2005, 43:3380-3389.
14. Fite A., Macfarlane S., Furrie E., Bahrami B., Cummings J.H., Steinke D.T., et al. Longitudinal analyses of gut mucosal microbiotas in ulcerative colitis in relation to patient age and disease severity and duration. JClin Microbiol 2013, 51:849-856.
15. Macfarlane S., Woodmansey E.J., Macfarlane G.T. Colonization of mucin by human intestinal bacteria and establishment of biofilm communities in a two-stage continuous culture system. Appl Environ Microbiol 2005, 71:7483-7492.
16. Sharp R., Macfarlane G.T. Chemostat enrichments of human feces with resistant starch are selective for adherent butyrate-producing clostridia at high dilution rates. Appl Environ Microbiol 2000, 66:4212-4221.
17. Larue R., Yu Z., Parisi V.A., Egan A.R., Morrison M. Novel microbial diversity adherent to plant biomass in the herbivore gastrointestinal tract, as revealed by ribosomal intergenic spacer analysis and rrs gene sequencing. Environ Microbiol 2005, 7:530-543.
18. Woods J., Boegli L., Kirker K.R., Agostinho A.M., Durch A.M., Delancey Pulcini E., et al. Development and application of a polymicrobial, invitro, wound biofilm model. JAppl Microbiol 2012, 112:998-1006.
19. Leung J.W., Liu Y., Chan R.C., Tang Y., Mina Y., Cheng A.F., et al. Early attachment of anaerobic bacteria may play an important role in biliary stent blockage. Gastrointest Endosc 2000, 52:725-729.
20. Feldmeier H., Heukelbach J., Eisele M., Sousa A.Q., Barbosa L.M., Carvalho C.B. Bacterial superinfection in human tungiasis. Trop Med Int Health 2002, 7:559-564.
21. Donelli G., Vuotto C., Cardines R., Mastrantonio P. Biofilm-growing intestinal anaerobic bacteria. FEMS Immunol Med Microbiol 2012, 65:318-325.
22. Crowther G.S., Chilton C.H., Todhunter S.L., Nicholson S., Freeman J., Baines S.D., et al. Development and validation of a chemostat gut model to study both planktonic and biofilm modes of growth of Clostridium difficile and human microbiota. PloS one 2014, 9:e88396.
23. Dawson L.F., Valiente E., Faulds-Pain A., Donahue E.H., Wren B.W. Characterisation of Clostridium difficile biofilm formation, a role for Spo0A. PloS one 2012, 7:e50527.
24. Ethapa T., Leuzzi R., Ng Y.K., Baban S.T., Adamo R., Kuehne S.A., et al. Multiple factors modulate biofilm formation by the anaerobic pathogen Clostridium difficile. JBacteriol 2013, 195:545-555.
25. Obana N., Nakamura K., Nomura N. Asporulation factor is involved in morphological change of Clostridium perfringens biofilm in response to temperature. J Bacteriol 2014 Apr, 196(8):1540-1550. [Epub 2014 Feb 7]. 10.1128/JB.01444-13.
26. Semenyuk E.G., Laning M.L., Foley J., Johnston P.F., Knight K.L., Gerding D.N., et al. Spore formation and toxin production in Clostridium difficile biofilms. PloS one 2014, 9:e87757.
27. Varga J.J., Therit B., Melville S.B. Type IV pili and the CcpA protein are needed for maximal biofilm formation by the gram-positive anaerobic pathogen Clostridium perfringens. Infect Immun 2008, 76:4944-4951.
28. Blanckaert K., Coignard B., Grandbastien B., Astagneau P., Barbut F. Update on Clostridium difficile infections. Rev Med Interne 2008, 29:209-214.
29. Smedley J.G., Fisher D.J., Sayeed S., Chakrabarti G., McClane B.A. The enteric toxins of Clostridium perfringens. Rev Physiol Biochem Pharmacol 2004, 152:183-204.
30. Ganeshapillai J., Vinogradov E., Rousseau J., Weese J.S., Monteiro M.A. Clostridium difficile cell-surface polysaccharides composed of pentaglycosyl and hexaglycosyl phosphate repeating units. Carbohydr Res 2008, 343:703-710.
31. Lopez D., Vlamakis H., Losick R., Kolter R. Cannibalism enhances biofilm development in Bacillus subtilis. Mol Microbiol 2009, 74:609-618.
32. Ammam F., Meziane-Cherif D., Mengin-Lecreulx D., Blanot D., Patin D., Boneca I.G., et al. The functional vanGCd cluster of Clostridium difficile does not confer vancomycin resistance. Mol Microbiol 2013, 89:612-625.
33. Guttenplan S.B., Kearns D.B. Regulation of flagellar motility during biofilm formation. FEMS Microbiol Rev 2013, 37:849-871.
34. Houry A., Gohar M., Deschamps J., Tischenko E., Aymerich S., Gruss A., et al. Bacterial swimmers that infiltrate and take over the biofilm matrix. Proc Natl Acad Sci U S A 2012, 109:13088-13093.
35. de la Riva L., Willing S.E., Tate E.W., Fairweather N.F. Roles of cysteine proteases Cwp84 and Cwp13 in biogenesis of the cell wall of Clostridium difficile. JBacteriol 2011, 193:3276-3285.
36. Kirby J.M., Ahern H., Roberts A.K., Kumar V., Freeman Z., Acharya K.R., et al. Cwp84, a surface-associated cysteine protease, plays a role in the maturation of the surface layer of Clostridium difficile. JBiol Chem 2009, 284:34666-34673.
37. Heap J.T., Pennington O.J., Cartman S.T., Carter G.P., Minton N.P. The ClosTron: a universal gene knock-out system for the genus Clostridium. JMicrobiol Methods 2007, 70:452-464.
38. Molle V., Fujita M., Jensen S.T., Eichenberger P., Gonzalez-Pastor J.E., Liu J.S., et al. The Spo0A regulon of Bacillus subtilis. Mol Microbiol 2003, 50:1683-1701.
39. Hamon M.A., Lazazzera B.A. The sporulation transcription factor Spo0A is required for biofilm development in Bacillus subtilis. Mol Microbiol 2001, 42:1199-1209.
40. Miyata S., Moriyama R., Miyahara N., Makino S. Agene (sleC) encoding a spore-cortex-lytic enzyme from Clostridium perfringens S40 spores; cloning, sequence analysis and molecular characterization. Microbiology 1995, 141(Pt 10):2643-2650.
41. Burns D.A., Heap J.T., Minton N.P. SleC is essential for germination of Clostridium difficile spores in nutrient-rich medium supplemented with the bile salt taurocholate. JBacteriol 2010, 192:657-664.
42. Gutelius D., Hokeness K., Logan S.M., Reid C.W. Functional analysis of SleC from Clostridium difficile: an essential lytic transglycosylase involved in spore germination. Microbiology 2014, 160:209-216.
43. Allan V.J., Callow M.E., Macaskie L.E., Paterson-Beedle M. Effect of nutrient limitation on biofilm formation and phosphatase activity of a Citrobacter spp. Microbiology 2002, 148:277-288.
44. Tobisch S., Zuhlke D., Bernhardt J., Stulke J., Hecker M. Role of CcpA in regulation of the central pathways of carbon catabolism in Bacillus subtilis. JBacteriol 1999, 181:6996-7004.
45. Antunes A., Camiade E., Monot M., Courtois E., Barbut F., Sernova N.V., et al. Global transcriptional control by glucose and carbon regulator CcpA in Clostridium difficile. Nucleic Acids Res 2012, 40:10701-10718.
46. Varga J., Stirewalt V.L., Melville S.B. The CcpA protein is necessary for efficient sporulation and enterotoxin gene (cpe) regulation in Clostridium perfringens. JBacteriol 2004, 186:5221-5229.
47. Federle M.J., Bassler B.L. Interspecies communication in bacteria. JClin Invest 2003, 112:1291-1299.
48. Carter G.P., Purdy D., Williams P., Minton N.P. Quorum sensing in Clostridium difficile: analysis of a luxS-type signalling system. JMed Microbiol 2005, 54:119-127.
49. Lee A.S., Song K.P. LuxS/autoinducer-2 quorum sensing molecule regulates transcriptional virulence gene expression in Clostridium difficile. Biochem Biophys Res Commun 2005, 335:659-666.
50. Bordeleau E., Fortier L.C., Malouin F., Burrus V. c-di-GMP turn-over in Clostridium difficile is controlled by a plethora of diguanylate cyclases and phosphodiesterases. PLoS Genet 2011, 7:e1002039.
51. Purcell E.B., McKee R.W., McBride S.M., Waters C.M., Tamayo R. Cyclic diguanylate inversely regulates motility and aggregation in Clostridium difficile. JBacteriol 2012, 194:3307-3316.
52. Soutourina O.A., Monot M., Boudry P., Saujet L., Pichon C., Sismeiro O., et al. Genome-wide identification of regulatory RNAs in the human pathogen Clostridium difficile. PLoS Genet 2013, 9:e1003493.
53. Signoretti F.G., Endo M.S., Gomes B.P., Montagner F., Tosello F.B., Jacinto R.C. Persistent extraradicular infection in root-filled asymptomatic human tooth: scanning electron microscopic analysis and microbial investigation after apical microsurgery. JEndod 2011, 37:1696-1700.
54. Ren Z., Steinberg L.M., Regan J.M. Electricity production and microbial biofilm characterization in cellulose-fed microbial fuel cells. Water Sci Technol 2008, 58:617-622.
55. Dumitrache A., Wolfaardt G.M., Allen D.G., Liss S.N., Lynd L.R. Tracking the cellulolytic activity of Clostridium thermocellum biofilms. Biotechnol Biofuels 2013, 6:175.
56. Nagy K.N., Sonkodi I., Szoke I., Nagy E., Newman H.N. The microflora associated with human oral carcinomas. Oral Oncol 1998, 34:304-308.
57. Weiss S., Lebuhn M., Andrade D., Zankel A., Cardinale M., Birner-Gruenberger R., et al. Activated zeolite-suitable carriers for microorganisms in anaerobic digestion processes?. Appl Microbiol Biotechnol 2013, 97:3225-3238.