-
2
-
-
84907943686
-
Polypharmacology: Challenges and opportunities in drug discovery
-
A. Anighoro Polypharmacology: challenges and opportunities in drug discovery J. Med. Chem. 57 2014 7874 7887
-
(2014)
J. Med. Chem.
, vol.57
, pp. 7874-7887
-
-
Anighoro, A.1
-
3
-
-
84889262928
-
Polypharmacology - Foe or friend?
-
J.U. Peters Polypharmacology - foe or friend? J. Med. Chem. 56 2013 8955 8971
-
(2013)
J. Med. Chem.
, vol.56
, pp. 8955-8971
-
-
Peters, J.U.1
-
4
-
-
70449634957
-
Predicting new molecular targets for known drugs
-
M.J. Keiser Predicting new molecular targets for known drugs Nature 462 2009 175 181
-
(2009)
Nature
, vol.462
, pp. 175-181
-
-
Keiser, M.J.1
-
5
-
-
36949011636
-
The G protein-coupled receptor subset of the rat genome
-
D. Gloriam The G protein-coupled receptor subset of the rat genome BMC Genomics 8 2007 338
-
(2007)
BMC Genomics
, vol.8
, pp. 338
-
-
Gloriam, D.1
-
6
-
-
77949370572
-
The impact of GPCR structures on pharmacology and structure-based drug design
-
M. Congreve, and F. Marshall The impact of GPCR structures on pharmacology and structure-based drug design Br. J. Pharmacol. 159 2010 986 996
-
(2010)
Br. J. Pharmacol.
, vol.159
, pp. 986-996
-
-
Congreve, M.1
Marshall, F.2
-
7
-
-
84934435689
-
The GPCR crystallography boom: Providing an invaluable source of structural information and expanding the scope of homology modeling
-
S. Costanzi, and K. Wang The GPCR crystallography boom: providing an invaluable source of structural information and expanding the scope of homology modeling Adv. Exp. Med. Biol. 796 2014 3 13
-
(2014)
Adv. Exp. Med. Biol.
, vol.796
, pp. 3-13
-
-
Costanzi, S.1
Wang, K.2
-
8
-
-
84865228105
-
New insights for drug design from the X-ray crystallographic structures of G-protein-coupled receptors
-
K.A. Jacobson, and S. Costanzi New insights for drug design from the X-ray crystallographic structures of G-protein-coupled receptors Mol. Pharmacol. 82 2012 361 371
-
(2012)
Mol. Pharmacol.
, vol.82
, pp. 361-371
-
-
Jacobson, K.A.1
Costanzi, S.2
-
9
-
-
84913526729
-
Novel chemogenomic approaches to drug design
-
A. Darvas, 2nd edn CRC Press
-
D. Rognan Novel chemogenomic approaches to drug design A. Darvas, Chemical Genomics and Proteomics 2nd edn 2013 CRC Press 173 204
-
(2013)
Chemical Genomics and Proteomics
, pp. 173-204
-
-
Rognan, D.1
-
10
-
-
84878543095
-
Modeling G protein-coupled receptors and their interactions with ligands
-
S. Costanzi Modeling G protein-coupled receptors and their interactions with ligands Curr. Opin. Struct. Biol. 23 2013 185 190
-
(2013)
Curr. Opin. Struct. Biol.
, vol.23
, pp. 185-190
-
-
Costanzi, S.1
-
11
-
-
84858110277
-
Homology modeling of class a g protein-coupled receptors
-
S. Costanzi Homology modeling of class a g protein-coupled receptors Methods Mol. Biol. 857 2012 259 279
-
(2012)
Methods Mol. Biol.
, vol.857
, pp. 259-279
-
-
Costanzi, S.1
-
12
-
-
77955113796
-
Modelling G protein-coupled receptors: A concrete possibility
-
S. Costanzi Modelling G protein-coupled receptors: a concrete possibility Chim. Oggi 28 2010 26 30
-
(2010)
Chim. Oggi
, vol.28
, pp. 26-30
-
-
Costanzi, S.1
-
13
-
-
67349088738
-
Community-wide assessment of GPCR structure modelling and ligand docking: GPCR Dock 2008
-
M. Michino Community-wide assessment of GPCR structure modelling and ligand docking: GPCR Dock 2008 Nat. Rev. Drug Discov. 8 2009 455 463
-
(2009)
Nat. Rev. Drug Discov.
, vol.8
, pp. 455-463
-
-
Michino, M.1
-
14
-
-
80051521545
-
Status of GPCR modeling and docking as reflected by community-wide GPCR Dock 2010 assessment
-
I. Kufareva Status of GPCR modeling and docking as reflected by community-wide GPCR Dock 2010 assessment Structure 19 2011 1108 1126
-
(2011)
Structure
, vol.19
, pp. 1108-1126
-
-
Kufareva, I.1
-
15
-
-
80054795187
-
GPCR agonist binding revealed by modeling and crystallography
-
V. Katritch, and R. Abagyan GPCR agonist binding revealed by modeling and crystallography Trends Pharmacol. Sci. 32 2011 637 643
-
(2011)
Trends Pharmacol. Sci.
, vol.32
, pp. 637-643
-
-
Katritch, V.1
Abagyan, R.2
-
16
-
-
43949095157
-
On the applicability of GPCR homology models to computer-aided drug discovery: A comparison between in silico and crystal structures of the beta2-adrenergic receptor
-
S. Costanzi On the applicability of GPCR homology models to computer-aided drug discovery: a comparison between in silico and crystal structures of the beta2-adrenergic receptor J. Med. Chem. 51 2008 2907 2914
-
(2008)
J. Med. Chem.
, vol.51
, pp. 2907-2914
-
-
Costanzi, S.1
-
17
-
-
80053453210
-
A computational approach to finding novel targets for existing drugs
-
Y.Y. Li A computational approach to finding novel targets for existing drugs PLoS Comput. Biol. 7 2011 e1002139
-
(2011)
PLoS Comput. Biol.
, vol.7
, pp. 1002139
-
-
Li, Y.Y.1
-
18
-
-
84856231225
-
In silico screening for agonists and blockers of the β2 adrenergic receptor: Implications of inactive and activated state structures
-
S. Costanzi, and S. Vilar In silico screening for agonists and blockers of the β2 adrenergic receptor: implications of inactive and activated state structures J. Comput. Chem. 33 2012 561 572
-
(2012)
J. Comput. Chem.
, vol.33
, pp. 561-572
-
-
Costanzi, S.1
Vilar, S.2
-
19
-
-
84934443969
-
Predicting the biological activities through QSAR analysis and docking-based scoring
-
S. Vilar, and S. Costanzi Predicting the biological activities through QSAR analysis and docking-based scoring Methods Mol. Biol. 914 2012 271 284
-
(2012)
Methods Mol. Biol.
, vol.914
, pp. 271-284
-
-
Vilar, S.1
Costanzi, S.2
-
20
-
-
79751525956
-
Docking-based virtual screening for ligands of G protein-coupled receptors: Not only crystal structures but also in silico models
-
S. Vilar Docking-based virtual screening for ligands of G protein-coupled receptors: not only crystal structures but also in silico models J. Mol. Graph. Model. 29 2011 614 623
-
(2011)
J. Mol. Graph. Model.
, vol.29
, pp. 614-623
-
-
Vilar, S.1
-
21
-
-
84865248665
-
Chapter 18 Structure-based virtual screening for ligands of g protein-coupled receptors
-
J. Giraldo, J-P. Pin, The Royal Society of Chemistry
-
S. Costanzi Chapter 18 Structure-based virtual screening for ligands of g protein-coupled receptors J. Giraldo, J-P. Pin, G Protein-Coupled Receptors: From Structure to Function 2011 The Royal Society of Chemistry 359 374
-
(2011)
G Protein-Coupled Receptors: From Structure to Function
, pp. 359-374
-
-
Costanzi, S.1
-
22
-
-
84875807317
-
Conformation guides molecular efficacy in docking screens of activated beta-2 adrenergic G protein coupled receptor
-
D.R. Weiss Conformation guides molecular efficacy in docking screens of activated beta-2 adrenergic G protein coupled receptor ACS Chem. Biol. 8 2013 1018 1026
-
(2013)
ACS Chem. Biol.
, vol.8
, pp. 1018-1026
-
-
Weiss, D.R.1
-
23
-
-
84859460667
-
Structure-based ligand discovery for the protein-protein interface of chemokine receptor CXCR4
-
M.M. Mysinger Structure-based ligand discovery for the protein-protein interface of chemokine receptor CXCR4 Proc. Natl. Acad. Sci. U.S.A. 109 2012 5517 5522
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 5517-5522
-
-
Mysinger, M.M.1
-
24
-
-
84860513814
-
Structure-based drug screening for G-protein-coupled receptors
-
B.K. Shoichet, and B.K. Kobilka Structure-based drug screening for G-protein-coupled receptors Trends Pharmacol. Sci. 33 2012 268 272
-
(2012)
Trends Pharmacol. Sci.
, vol.33
, pp. 268-272
-
-
Shoichet, B.K.1
Kobilka, B.K.2
-
25
-
-
80054868459
-
Ligand discovery from a dopamine D3 receptor homology model and crystal structure
-
J. Carlsson Ligand discovery from a dopamine D3 receptor homology model and crystal structure Nat. Chem. Biol. 7 2011 769 778
-
(2011)
Nat. Chem. Biol.
, vol.7
, pp. 769-778
-
-
Carlsson, J.1
-
26
-
-
80053167954
-
Structure-based discovery of prescription drugs that interact with the norepinephrine transporter, NET
-
A. Schlessinger Structure-based discovery of prescription drugs that interact with the norepinephrine transporter, NET Proc. Natl. Acad. Sci. U.S.A. 108 2011 15810 15815
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 15810-15815
-
-
Schlessinger, A.1
-
27
-
-
77952050479
-
Structure-based discovery of A2A adenosine receptor ligands
-
J. Carlsson Structure-based discovery of A2A adenosine receptor ligands J. Med. Chem. 53 2010 3748 3755
-
(2010)
J. Med. Chem.
, vol.53
, pp. 3748-3755
-
-
Carlsson, J.1
-
28
-
-
84888883269
-
Structure-based ligand discovery targeting orthosteric and allosteric pockets of dopamine receptors
-
J.R. Lane Structure-based ligand discovery targeting orthosteric and allosteric pockets of dopamine receptors Mol. Pharmacol. 84 2013 794 807
-
(2013)
Mol. Pharmacol.
, vol.84
, pp. 794-807
-
-
Lane, J.R.1
-
29
-
-
77649204282
-
Structure-based discovery of novel chemotypes for adenosine A2A receptor antagonists
-
V. Katritch Structure-based discovery of novel chemotypes for adenosine A2A receptor antagonists J. Med. Chem. 53 2010 1799 1809
-
(2010)
J. Med. Chem.
, vol.53
, pp. 1799-1809
-
-
Katritch, V.1
-
30
-
-
84897008974
-
Identification of novel serotonin transporter compounds by virtual screening
-
M. Gabrielsen Identification of novel serotonin transporter compounds by virtual screening J. Chem. Inf. Model. 54 2014 933 943
-
(2014)
J. Chem. Inf. Model.
, vol.54
, pp. 933-943
-
-
Gabrielsen, M.1
-
31
-
-
82555187387
-
Crystal structure-based virtual screening for fragment-like ligands of the human histamine H1 receptor
-
C. de Graaf Crystal structure-based virtual screening for fragment-like ligands of the human histamine H1 receptor J. Med. Chem. 54 2011 8195 8206
-
(2011)
J. Med. Chem.
, vol.54
, pp. 8195-8206
-
-
De Graaf, C.1
-
32
-
-
77649196223
-
GPCR 3D homology models for ligand screening: Lessons learned from blind predictions of adenosine A2A receptor complex
-
V. Katritch GPCR 3D homology models for ligand screening: lessons learned from blind predictions of adenosine A2A receptor complex Proteins 78 2010 197 211
-
(2010)
Proteins
, vol.78
, pp. 197-211
-
-
Katritch, V.1
-
33
-
-
39149097541
-
Discovery of novel agonists and antagonists of the free fatty acid receptor 1 (FFAR1) using virtual screening
-
I. Tikhonova Discovery of novel agonists and antagonists of the free fatty acid receptor 1 (FFAR1) using virtual screening J. Med. Chem. 51 2008 625 633
-
(2008)
J. Med. Chem.
, vol.51
, pp. 625-633
-
-
Tikhonova, I.1
-
34
-
-
42149139028
-
A virtual screen for diverse ligands: Discovery of selective G protein-coupled receptor antagonists
-
S. Engel A virtual screen for diverse ligands: discovery of selective G protein-coupled receptor antagonists J. Am. Chem. Soc. 130 2008 5115 5123
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 5115-5123
-
-
Engel, S.1
-
35
-
-
84859460667
-
Structure-based ligand discovery for the protein-protein interface of chemokine receptor CXCR4
-
M.M. Mysinger Structure-based ligand discovery for the protein-protein interface of chemokine receptor CXCR4 Proc. Natl. Acad. Sci. U.S.A. 109 2012 5517 5522
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 5517-5522
-
-
Mysinger, M.M.1
-
36
-
-
84901425446
-
Structural probing of off-target G protein-coupled receptor activities within a series of adenosine/adenine congeners
-
S. Paoletta Structural probing of off-target G protein-coupled receptor activities within a series of adenosine/adenine congeners PLoS ONE 9 2014 e97858 10.1371/journal.pone.0097858
-
(2014)
PLoS ONE
, vol.9
, pp. 97858
-
-
Paoletta, S.1
-
37
-
-
84855402621
-
The origin of GPCRs: Identification of mammalian like rhodopsin, adhesion, glutamate and frizzled GPCRs in fungi
-
A. Krishnan The origin of GPCRs: identification of mammalian like rhodopsin, adhesion, glutamate and frizzled GPCRs in fungi PLoS ONE 7 2012 e29817
-
(2012)
PLoS ONE
, vol.7
, pp. 29817
-
-
Krishnan, A.1
-
38
-
-
61949087315
-
The G protein-coupled receptor subset of the dog genome is more similar to that in humans than rodents
-
T. Haitina The G protein-coupled receptor subset of the dog genome is more similar to that in humans than rodents BMC Genomics 10 2009 24
-
(2009)
BMC Genomics
, vol.10
, pp. 24
-
-
Haitina, T.1
-
39
-
-
30144441512
-
A chemogenomic analysis of the transmembrane binding cavity of human G-protein-coupled receptors
-
J. Surgand A chemogenomic analysis of the transmembrane binding cavity of human G-protein-coupled receptors Proteins 62 2006 509 538
-
(2006)
Proteins
, vol.62
, pp. 509-538
-
-
Surgand, J.1
-
40
-
-
17844400914
-
The repertoire of G-protein-coupled receptors in fully sequenced genomes
-
R. Fredriksson, and H. Schiöth The repertoire of G-protein-coupled receptors in fully sequenced genomes Mol. Pharmacol. 67 2005 1414 1425
-
(2005)
Mol. Pharmacol.
, vol.67
, pp. 1414-1425
-
-
Fredriksson, R.1
Schiöth, H.2
-
41
-
-
0038024615
-
The G-protein-coupled receptors in the human genome form five main families. Phylogenetic analysis, paralogon groups, and fingerprints
-
R. Fredriksson The G-protein-coupled receptors in the human genome form five main families. Phylogenetic analysis, paralogon groups, and fingerprints Mol. Pharmacol. 63 2003 1256 1272
-
(2003)
Mol. Pharmacol.
, vol.63
, pp. 1256-1272
-
-
Fredriksson, R.1
-
42
-
-
33746364829
-
A missense mutation in the seven-transmembrane domain of the human Ca2+ receptor converts a negative allosteric modulator into a positive allosteric modulator
-
J. Hu A missense mutation in the seven-transmembrane domain of the human Ca2+ receptor converts a negative allosteric modulator into a positive allosteric modulator J. Biol. Chem. 281 2006 21558 21565
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 21558-21565
-
-
Hu, J.1
-
43
-
-
77954455011
-
Signaling-sensitive amino acids surround the allosteric ligand binding site of the thyrotropin receptor
-
H. Kleinau Signaling-sensitive amino acids surround the allosteric ligand binding site of the thyrotropin receptor FASEB J. 24 2010 2347 2354
-
(2010)
FASEB J.
, vol.24
, pp. 2347-2354
-
-
Kleinau, H.1
-
44
-
-
84904994581
-
Structure of class C GPCR metabotropic glutamate receptor 5 transmembrane domain
-
A. Doré Structure of class C GPCR metabotropic glutamate receptor 5 transmembrane domain Nature 511 2014 557 562
-
(2014)
Nature
, vol.511
, pp. 557-562
-
-
Doré, A.1
-
45
-
-
44449159422
-
Quantifying the relationships among drug classes
-
J. Hert Quantifying the relationships among drug classes J. Chem. Inf. Model. 48 2008 755 765
-
(2008)
J. Chem. Inf. Model.
, vol.48
, pp. 755-765
-
-
Hert, J.1
-
46
-
-
84902164279
-
High end GPCR design: Crafted ligand design and druggability analysis using protein structure, lipophilic hotspots and explicit water networks
-
J.S. Mason High end GPCR design: crafted ligand design and druggability analysis using protein structure, lipophilic hotspots and explicit water networks In Silico Pharmacol 1 2013 23 10.1186/2193-9616-1-23
-
(2013)
In Silico Pharmacol
, vol.1
, pp. 23
-
-
Mason, J.S.1
-
47
-
-
84894680958
-
Supervised molecular dynamics (SuMD) as a helpful tool to depict GPCR-ligand recognition pathway in a nanosecond time scale
-
D. Sabbadin, and S. Moro Supervised molecular dynamics (SuMD) as a helpful tool to depict GPCR-ligand recognition pathway in a nanosecond time scale J. Chem. Inf. Model. 54 2014 372 376
-
(2014)
J. Chem. Inf. Model.
, vol.54
, pp. 372-376
-
-
Sabbadin, D.1
Moro, S.2
-
48
-
-
84873685831
-
Molecular signatures of G-protein-coupled receptors
-
A.J. Venkatakrishnan Molecular signatures of G-protein-coupled receptors Nature 494 2013 185 194
-
(2013)
Nature
, vol.494
, pp. 185-194
-
-
Venkatakrishnan, A.J.1
-
49
-
-
77957055780
-
Integrated methods for the construction of three-dimensional models of structure-function relations in G protein-coupled receptors
-
J.A. Ballesteros, and H. Weinstein Integrated methods for the construction of three-dimensional models of structure-function relations in G protein-coupled receptors Methods Neurosci. 25 1995 366 428
-
(1995)
Methods Neurosci.
, vol.25
, pp. 366-428
-
-
Ballesteros, J.A.1
Weinstein, H.2
-
50
-
-
69549109944
-
Conciliating binding efficiency and polypharmacology
-
J. Mestres, and E. Gregori-Puigjané Conciliating binding efficiency and polypharmacology Trends Pharmacol. Sci. 30 2009 470 474
-
(2009)
Trends Pharmacol. Sci.
, vol.30
, pp. 470-474
-
-
Mestres, J.1
Gregori-Puigjané, E.2
-
51
-
-
0038390401
-
1,4-Dihydropyridines as calcium channel ligands and privileged structures
-
D. Triggle 1,4-Dihydropyridines as calcium channel ligands and privileged structures Cell. Mol. Neurobiol. 23 2003 293 303
-
(2003)
Cell. Mol. Neurobiol.
, vol.23
, pp. 293-303
-
-
Triggle, D.1
-
52
-
-
0030796012
-
Structure activity relationships of 4-phenylethynyl-6-phenyl-1,4-dihydropyridines as highly selective A3 adenosine receptor antagonists
-
J.L. Jiang Structure activity relationships of 4-phenylethynyl-6-phenyl-1,4-dihydropyridines as highly selective A3 adenosine receptor antagonists J. Med. Chem. 40 1997 2596 2608
-
(1997)
J. Med. Chem.
, vol.40
, pp. 2596-2608
-
-
Jiang, J.L.1
-
53
-
-
84859270118
-
Classification of scaffold-hopping approaches
-
H. Sun Classification of scaffold-hopping approaches Drug Discov. Today 17 2012 310 324
-
(2012)
Drug Discov. Today
, vol.17
, pp. 310-324
-
-
Sun, H.1
-
54
-
-
84884185651
-
One size does not fit all: The limits of structure-based models in drug discovery
-
G.A. Ross One size does not fit all: the limits of structure-based models in drug discovery J. Chem. Theor. Comput. 9 2013 4266 4274
-
(2013)
J. Chem. Theor. Comput.
, vol.9
, pp. 4266-4274
-
-
Ross, G.A.1
-
55
-
-
84865227014
-
Rethinking molecular similarity: Comparing compounds on the basis of biological activity
-
P.M. Petrone Rethinking molecular similarity: comparing compounds on the basis of biological activity ACS Chem. Biol. 7 2012 1399 1409
-
(2012)
ACS Chem. Biol.
, vol.7
, pp. 1399-1409
-
-
Petrone, P.M.1
-
56
-
-
84904556443
-
A screening pattern recognition method finds new and divergent targets for drugs and natural products
-
Published online June 2, 2014
-
A.M. Wassermann A screening pattern recognition method finds new and divergent targets for drugs and natural products ACS Chem. Biol. 9 2014 1622 1631 Published online June 2, 2014 10.1021/cb5001839
-
(2014)
ACS Chem. Biol.
, vol.9
, pp. 1622-1631
-
-
Wassermann, A.M.1
-
57
-
-
84880304251
-
From atomic structures to neuronal functions of G protein-coupled receptors
-
K. Palczewski, and T. Orban From atomic structures to neuronal functions of G protein-coupled receptors Ann. Rev. Neurosci. 36 2013 139 164
-
(2013)
Ann. Rev. Neurosci.
, vol.36
, pp. 139-164
-
-
Palczewski, K.1
Orban, T.2
-
58
-
-
71749083052
-
Rhodopsin and the others: A historical perspective on structural studies of G protein-coupled receptors
-
S. Costanzi Rhodopsin and the others: a historical perspective on structural studies of G protein-coupled receptors Curr. Pharm. Des. 15 2009 3994 4002
-
(2009)
Curr. Pharm. Des.
, vol.15
, pp. 3994-4002
-
-
Costanzi, S.1
-
59
-
-
84856095231
-
Chemical informatics and target identification in a zebrafish phenotypic screen
-
C. Laggner Chemical informatics and target identification in a zebrafish phenotypic screen Nat. Chem. Biol. 8 2011 144 146
-
(2011)
Nat. Chem. Biol.
, vol.8
, pp. 144-146
-
-
Laggner, C.1
|