메뉴 건너뛰기




Volumn 15, Issue 6, 2013, Pages 1014-1027

A comparative evaluation on prediction methods of nucleosome positioning

Author keywords

G:C content; Nucleosomal sequence; Nucleosome positioning; Performance comparison; Prediction accuracy

Indexed keywords

5' UNTRANSLATED REGION; NUCLEOSOME;

EID: 84913586238     PISSN: 14675463     EISSN: 14774054     Source Type: Journal    
DOI: 10.1093/bib/bbt062     Document Type: Article
Times cited : (24)

References (60)
  • 1
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8°A resolution
    • Luger K, Mader AW, Richmond RK, etal. Crystal structure of the nucleosome core particle at 2.8°A resolution. Nature 1997;389:251-60.
    • (1997) Nature , vol.389 , pp. 251-260
    • Luger, K.1    Mader, A.W.2    Richmond, R.K.3
  • 2
    • 0037992395 scopus 로고    scopus 로고
    • The structure of DNA in the nucleosome core
    • Richmond TJ, Davey CA. The structure of DNA in the nucleosome core. Nature 2003;423:145-50.
    • (2003) Nature , vol.423 , pp. 145-150
    • Richmond, T.J.1    Davey, C.A.2
  • 4
    • 0033529565 scopus 로고    scopus 로고
    • Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome
    • Kornberg RD, Lorch Y. Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome. Cell 1999;98(3):285-94.
    • (1999) Cell , vol.98 , Issue.3 , pp. 285-294
    • Kornberg, R.D.1    Lorch, Y.2
  • 5
    • 68149120313 scopus 로고    scopus 로고
    • Nucleosomal fluctuations govern the transcription dynamics of RNA polymerase II
    • Hodges C, Bintu L, Lubkowska L, et al. Nucleosomal fluctuations govern the transcription dynamics of RNA polymerase II. Science 2009;325(5940):626-8.
    • (2009) Science , vol.325 , Issue.5940 , pp. 626-628
    • Hodges, C.1    Bintu, L.2    Lubkowska, L.3
  • 6
    • 69949124307 scopus 로고    scopus 로고
    • Nucleosome positioning as a determinant of exon recognition
    • Tilgner H, Nikolaou C, Althammer S, et al. Nucleosome positioning as a determinant of exon recognition. Nat Struct Mol Biol 2009;16(9):996-1002.
    • (2009) Nat Struct Mol Biol , vol.16 , Issue.9 , pp. 996-1002
    • Tilgner, H.1    Nikolaou, C.2    Althammer, S.3
  • 7
    • 63449105244 scopus 로고    scopus 로고
    • Intrinsic variability of gene expression encoded in nucleosome positioning sequences
    • Choi JK, Kim YJ. Intrinsic variability of gene expression encoded in nucleosome positioning sequences. Nat Genet 2009;41(4):498-503.
    • (2009) Nat Genet , vol.41 , Issue.4 , pp. 498-503
    • Choi, J.K.1    Kim, Y.J.2
  • 8
    • 77149175671 scopus 로고    scopus 로고
    • Regulation of alternative splicing by histone modifications
    • Luco RF, Pan Q, Tominaga K, et al. Regulation of alternative splicing by histone modifications. Science 2010;327: 996-1000.
    • (2010) Science , vol.327 , pp. 996-1000
    • Luco, R.F.1    Pan, Q.2    Tominaga, K.3
  • 9
    • 0035839136 scopus 로고    scopus 로고
    • Translating the histone code
    • Jenuwein T, Allis CD. Translating the histone code. Science 2001;293:1074-80.
    • (2001) Science , vol.293 , pp. 1074-1080
    • Jenuwein, T.1    Allis, C.D.2
  • 10
    • 6044256118 scopus 로고    scopus 로고
    • Histones and histone modifications
    • Peterson CL, Laniel MA. Histones and histone modifications. Curr Biol 2004;14(14):R546-51.
    • (2004) Curr Biol , vol.14 , Issue.14 , pp. R546-R551
    • Peterson, C.L.1    Laniel, M.A.2
  • 11
    • 60349089645 scopus 로고    scopus 로고
    • Nucleosome positioning and gene regulation: advances through genomics
    • Jiang C, Pugh BF. Nucleosome positioning and gene regulation: advances through genomics. Nat Rev Genet 2009;10(3):161-72.
    • (2009) Nat Rev Genet , vol.10 , Issue.3 , pp. 161-172
    • Jiang, C.1    Pugh, B.F.2
  • 12
    • 22744432660 scopus 로고    scopus 로고
    • Genome-scale identification of nucleosome positions in S
    • Yuan GC, Liu YJ, Dion MF, et al. Genome-scale identification of nucleosome positions in S. cerevisiae. Science 2005; 309(5734):626-30.
    • (2005) cerevisiae. Science , vol.309 , Issue.5734 , pp. 626-630
    • Yuan, G.C.1    Liu, Y.J.2    Dion, M.F.3
  • 13
    • 34748826166 scopus 로고    scopus 로고
    • A high-resolution atlas of nucleosome occupancy in yeast
    • Lee W, Tillo D, Bray N, et al. A high-resolution atlas of nucleosome occupancy in yeast. Nat Genet 2007;39(10): 1235-44.
    • (2007) Nat Genet , vol.39 , Issue.10 , pp. 1235-1244
    • Lee, W.1    Tillo, D.2    Bray, N.3
  • 14
    • 43749099875 scopus 로고    scopus 로고
    • Nucleosome organization in the Drosophila genome
    • Mavrich TN, Jiang C, Ioshikhes IP, et al. Nucleosome organization in the Drosophila genome. Nature 2008;453: 358-62.
    • (2008) Nature , vol.453 , pp. 358-362
    • Mavrich, T.N.1    Jiang, C.2    Ioshikhes, I.P.3
  • 16
    • 79958777000 scopus 로고    scopus 로고
    • The nucleosome map of the mammalian liver
    • Li Z, Schug J, Tuteja G, et al. The nucleosome map of the mammalian liver. Nat Struct Mol Biol 2011;18(67): 742-6.
    • (2011) Nat Struct Mol Biol , vol.18 , Issue.67 , pp. 742-746
    • Li, Z.1    Schug, J.2    Tuteja, G.3
  • 17
    • 3543023310 scopus 로고    scopus 로고
    • Evidence for nucleosome depletion at active regulatory regions genome-wide
    • Lee CK, Shibata Y, Rao B, et al. Evidence for nucleosome depletion at active regulatory regions genome-wide. Nat Genet 2004;36(8):900-5.
    • (2004) Nat Genet , vol.36 , Issue.8 , pp. 900-905
    • Lee, C.K.1    Shibata, Y.2    Rao, B.3
  • 18
    • 20444403749 scopus 로고    scopus 로고
    • Intrinsic histone- DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast
    • Sekinger EA, Moqtaderi Z, Struhl K. Intrinsic histone- DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast. Mol Cell 2005;18(6):735-48.
    • (2005) Mol Cell , vol.18 , Issue.6 , pp. 735-748
    • Sekinger, E.A.1    Moqtaderi, Z.2    Struhl, K.3
  • 19
    • 33747500567 scopus 로고    scopus 로고
    • A genomic code for nucleosome positioning
    • Segal E, Fondufe-Mittendorf Y, Chen L, et al. A genomic code for nucleosome positioning. Nature 2006;442: 772-8.
    • (2006) Nature , vol.442 , pp. 772-778
    • Segal, E.1    Fondufe-Mittendorf, Y.2    Chen, L.3
  • 20
    • 57149119464 scopus 로고    scopus 로고
    • Distinct modes of regulation by chromatin encoded through nucleosome positioning signals
    • Field Y, Kaplan N, Fondufe-Mittendorf Y, et al. Distinct modes of regulation by chromatin encoded through nucleosome positioning signals. PLoS Comput Biol 2008; 4(11):e1000216.
    • (2008) PLoS Comput Biol , vol.4 , Issue.11
    • Field, Y.1    Kaplan, N.2    Fondufe-Mittendorf, Y.3
  • 21
    • 62649085538 scopus 로고    scopus 로고
    • The DNA-encoded nucleosome organization of a eukaryotic genome
    • Kaplan N, Moore IK, Fondufe-Mittendorf Y, et al. The DNA-encoded nucleosome organization of a eukaryotic genome. Nature 2009;458(7236):362-6.
    • (2009) Nature , vol.458 , Issue.7236 , pp. 362-366
    • Kaplan, N.1    Moore, I.K.2    Fondufe-Mittendorf, Y.3
  • 22
    • 46449112319 scopus 로고    scopus 로고
    • A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome
    • Mavrich TN, Ioshikhes IP, Venters BJ, et al. A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome. Genome Res 2008;18(7): 1073-83.
    • (2008) Genome Res , vol.18 , Issue.7 , pp. 1073-1083
    • Mavrich, T.N.1    Ioshikhes, I.P.2    Venters, B.J.3
  • 23
    • 68249142923 scopus 로고    scopus 로고
    • Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo
    • Zhang Y, Moqtaderi Z, Rattner BP, et al. Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo. Nat Struct Mol Biol 2009; 16:847-52.
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 847-852
    • Zhang, Y.1    Moqtaderi, Z.2    Rattner, B.P.3
  • 24
    • 77955365269 scopus 로고    scopus 로고
    • Evidence against a genomic code for nucleosome positioning
    • Zhang Y, Moqtaderi Z, Rattner BP, etal. Evidence against a genomic code for nucleosome positioning. Nat Struct Mol Biol 2010;17:920-3.
    • (2010) Nat Struct Mol Biol , vol.17 , pp. 920-923
    • Zhang, Y.1    Moqtaderi, Z.2    Rattner, B.P.3
  • 25
    • 77950361329 scopus 로고    scopus 로고
    • Are nucleosome positions in vivo primarily determined by histone- DNA sequence preferences?
    • Stein A, Takasuka TE, Collings CK. Are nucleosome positions in vivo primarily determined by histone- DNA sequence preferences? Nucleic Acids Res 2009;38: 709-19.
    • (2009) Nucleic Acids Res , vol.38 , pp. 709-719
    • Stein, A.1    Takasuka, T.E.2    Collings, C.K.3
  • 26
    • 79956316470 scopus 로고    scopus 로고
    • A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome
    • Zhang Z, Wippo CJ, Wal M, et al. A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome. Science 2011;332:977-80.
    • (2011) Science , vol.332 , pp. 977-980
    • Zhang, Z.1    Wippo, C.J.2    Wal, M.3
  • 27
    • 37249077649 scopus 로고    scopus 로고
    • Chromatin remodelling at promoters suppresses antisense transcription
    • Whitehouse I, Rando OJ, Delrow J, et al. Chromatin remodelling at promoters suppresses antisense transcription. Nature 2007;450:1031-5.
    • (2007) Nature , vol.450 , pp. 1031-1035
    • Whitehouse, I.1    Rando, O.J.2    Delrow, J.3
  • 28
    • 80053140931 scopus 로고    scopus 로고
    • A role for Snf2-related nucleosome-spacing enzymes in genome-wide nucleosome organization
    • Gkikopoulos T, Schofield P, Singh V, et al. A role for Snf2-related nucleosome-spacing enzymes in genome-wide nucleosome organization. Science 2011;333:1758-60.
    • (2011) Science , vol.333 , pp. 1758-1760
    • Gkikopoulos, T.1    Schofield, P.2    Singh, V.3
  • 29
    • 74949084972 scopus 로고    scopus 로고
    • A novel strategy of transcription regulation by intragenic nucleosome ordering
    • Vaillant C, Palmeira L, Chevereau G, et al. A novel strategy of transcription regulation by intragenic nucleosome ordering. Genome Res. 2010;20:59-67.
    • (2010) Genome Res. , vol.20 , pp. 59-67
    • Vaillant, C.1    Palmeira, L.2    Chevereau, G.3
  • 30
    • 84867371116 scopus 로고    scopus 로고
    • A functional evolutionary approach to identify determinants of nucleosome positioning: a unifying model for establishing the genome-wide pattern
    • Hughes AL, Jin Y, Rando OJ, et al. A functional evolutionary approach to identify determinants of nucleosome positioning: a unifying model for establishing the genome-wide pattern. Mol Cell 2012;48(1):5-15.
    • (2012) Mol Cell , vol.48 , Issue.1 , pp. 5-15
    • Hughes, A.L.1    Jin, Y.2    Rando, O.J.3
  • 31
    • 84875196326 scopus 로고    scopus 로고
    • Determinants of nucleosome positioning
    • Struhl K, Segal E. Determinants of nucleosome positioning. Nat StructMol Biol 2013;20(3):267-73.
    • (2013) Nat StructMol Biol , vol.20 , Issue.3 , pp. 267-273
    • Struhl, K.1    Segal, E.2
  • 32
    • 66349101154 scopus 로고    scopus 로고
    • Predicting functionality of protein-DNA interactions by integrating diverse evidence
    • Ucar D, Beyer A, Parthasarathy S, etal. Predicting functionality of protein-DNA interactions by integrating diverse evidence. Bioinformatics 2009;25(12):i137-44.
    • (2009) Bioinformatics , vol.25 , Issue.12 , pp. i137-i144
    • Ucar, D.1    Beyer, A.2    Parthasarathy, S.3
  • 33
    • 34547418057 scopus 로고    scopus 로고
    • Nucleosome occupancy information improves de novo motif discovery
    • Narlikar L, Gordan R, Hartemink AJ. Nucleosome occupancy information improves de novo motif discovery. RECOMB 2007;4453:107-21.
    • (2007) RECOMB , vol.4453 , pp. 107-121
    • Narlikar, L.1    Gordan, R.2    Hartemink, A.J.3
  • 34
    • 77954659099 scopus 로고    scopus 로고
    • Relationship between nucleosome positioning and DNA methylation
    • Chodavarapu RK, Feng S, Bernatavichute YV, et al. Relationship between nucleosome positioning and DNA methylation. Nature 2010;466(7304):388-92.
    • (2010) Nature , vol.466 , Issue.7304 , pp. 388-392
    • Chodavarapu, R.K.1    Feng, S.2    Bernatavichute, Y.V.3
  • 35
    • 57149100569 scopus 로고    scopus 로고
    • The impact of the nucleosome code on protein-coding sequence evolution in yeast
    • Warnecke T, Batada NN, Hurst LD. The impact of the nucleosome code on protein-coding sequence evolution in yeast. PLoS Genet 2008;4(11):e1000250.
    • (2008) PLoS Genet , vol.4 , Issue.11 , pp. e1000250
    • Warnecke, T.1    Batada, N.N.2    Hurst, L.D.3
  • 36
    • 33749153628 scopus 로고    scopus 로고
    • Nucleosome positions predicted through comparative genomics
    • Ioshikhes IP, Albert I, Zanton SJ, et al. Nucleosome positions predicted through comparative genomics. Nat Genet 2006;38(10):1210-5.
    • (2006) Nat Genet , vol.38 , Issue.10 , pp. 1210-1215
    • Ioshikhes, I.P.1    Albert, I.2    Zanton, S.J.3
  • 37
    • 34547643563 scopus 로고    scopus 로고
    • Nucleosome positioning signals in genomic DNA
    • Peckham HE, Thurman RE, Fu Y, et al. Nucleosome positioning signals in genomic DNA. Genome Res 2007; 17(8):1170-7.
    • (2007) Genome Res , vol.17 , Issue.8 , pp. 1170-1177
    • Peckham, H.E.1    Thurman, R.E.2    Fu, Y.3
  • 38
    • 34447644439 scopus 로고    scopus 로고
    • A novel roll-and-slide mechanism of DNA folding in chromatin: implications for nucleosome positioning
    • Tolstorukov MY, Colasanti AV, McCandlish DM, et al. A novel roll-and-slide mechanism of DNA folding in chromatin: implications for nucleosome positioning. J Mol Biol 2007;371(3):725-38.
    • (2007) J Mol Biol , vol.371 , Issue.3 , pp. 725-738
    • Tolstorukov, M.Y.1    Colasanti, A.V.2    McCandlish, D.M.3
  • 39
    • 45449093785 scopus 로고    scopus 로고
    • nuScore: a web-interface for nucleosome positioning predictions
    • Tolstorukov MY, Choudhary V, Olson WK, et al. nuScore: a web-interface for nucleosome positioning predictions. Bioinformatics 2008;24(12):1456-8.
    • (2008) Bioinformatics , vol.24 , Issue.12 , pp. 1456-1458
    • Tolstorukov, M.Y.1    Choudhary, V.2    Olson, W.K.3
  • 40
    • 77951944594 scopus 로고    scopus 로고
    • FineStr: a web server for single-base resolution nucleosome positioning
    • Gabdank I, Barash D, Trifonov EN. FineStr: a web server for single-base resolution nucleosome positioning. Bioinformatics 2010;26(6):845-6.
    • (2010) Bioinformatics , vol.26 , Issue.6 , pp. 845-846
    • Gabdank, I.1    Barash, D.2    Trifonov, E.N.3
  • 41
    • 38949204996 scopus 로고    scopus 로고
    • Genomic sequence is highly predictive of local nucleosome depletion
    • Yuan GC, Liu JS. Genomic sequence is highly predictive of local nucleosome depletion. PLoS Computat. Biol. 2008; 4(1):e13.
    • (2008) PLoS Computat. Biol. , vol.4 , Issue.1 , pp. e13
    • Yuan, G.C.1    Liu, J.S.2
  • 42
    • 78149343915 scopus 로고    scopus 로고
    • Structural constraints revealed in consistent nucleosome positions in the genome of S
    • Nikolaou C, Althammer S, Beato M, et al. Structural constraints revealed in consistent nucleosome positions in the genome of S. cerevisiae. Epigenetics Chromatin 2010; 3(1):20.
    • (2010) cerevisiae. Epigenetics Chromatin , vol.3 , Issue.1 , pp. 20
    • Nikolaou, C.1    Althammer, S.2    Beato, M.3
  • 43
    • 77954616951 scopus 로고    scopus 로고
    • Predicting nucleosome positioning using a duration Hidden Markov Model
    • Xi L, Fondufe-Mittendorf Y, Xia L, et al. Predicting nucleosome positioning using a duration Hidden Markov Model. BMC Bioinformatics 2010;11:346.
    • (2010) BMC Bioinformatics , vol.11 , pp. 346
    • Xi, L.1    Fondufe-Mittendorf, Y.2    Xia, L.3
  • 44
    • 68149108057 scopus 로고    scopus 로고
    • Using DNA mechanics to predict in vitro nucleosome positions and formation energies
    • Morozov AV, Fortney K, Gaykalova DA, et al. Using DNA mechanics to predict in vitro nucleosome positions and formation energies. Nucleic Acids Res. 2009;37(14): 4707-22.
    • (2009) Nucleic Acids Res. , vol.37 , Issue.14 , pp. 4707-4722
    • Morozov, A.V.1    Fortney, K.2    Gaykalova, D.A.3
  • 45
    • 46349097649 scopus 로고    scopus 로고
    • DNA physical properties determine nucleosome occupancy from yeast to fly
    • Miele V, Vaillant C, d'Aubenton Carafa Y, et al. DNA physical properties determine nucleosome occupancy from yeast to fly. Nucleic Acids Res. 2008;36(11):3746-56.
    • (2008) Nucleic Acids Res. , vol.36 , Issue.11 , pp. 3746-3756
    • Miele, V.1    Vaillant, C.2    d'Aubenton Carafa, Y.3
  • 46
    • 78650445679 scopus 로고    scopus 로고
    • Highthroughput sequencing reveals a simple model of nucleosome energetics
    • Locke G, Tolkunov D, Moqtaderi Z, et al. Highthroughput sequencing reveals a simple model of nucleosome energetics. Proc Natl Acad Sci USA 2010;107(49): 20998-1003.
    • (2010) Proc Natl Acad Sci USA , vol.107 , Issue.49 , pp. 20998-21003
    • Locke, G.1    Tolkunov, D.2    Moqtaderi, Z.3
  • 47
    • 84868128310 scopus 로고    scopus 로고
    • iNuc-PhysChem: a sequence-based predictor for identifying nucleosomes via physicochemical properties
    • Chen W, Lin H, Feng PM, et al. iNuc-PhysChem: a sequence-based predictor for identifying nucleosomes via physicochemical properties. PLoS ONE 2012;7(10): e47843.
    • (2012) PLoS ONE , vol.7 , Issue.10 , pp. e47843
    • Chen, W.1    Lin, H.2    Feng, P.M.3
  • 48
    • 84866536073 scopus 로고    scopus 로고
    • Sequence-based prediction of single nucleosome positioning and genome-wide nucleosome occupancy
    • Heijden T, Vugt JJ, Logie C, et al. Sequence-based prediction of single nucleosome positioning and genome-wide nucleosome occupancy. Proc Natl Acad Sci USA 2012; 109(38):E2514-22.
    • (2012) Proc Natl Acad Sci USA , vol.109 , Issue.38 , pp. E2514-E2522
    • Heijden, T.1    Vugt, J.J.2    Logie, C.3
  • 49
    • 0000783134 scopus 로고
    • Model for density variation at a fluid surface
    • Percus JK. Model for density variation at a fluid surface. J Stat Phys 1976;15:423-35.
    • (1976) J Stat Phys , vol.15 , pp. 423-435
    • Percus, J.K.1
  • 50
    • 0034522793 scopus 로고    scopus 로고
    • Asymmetries in the nucleosome core particle at 2.5 angstrom resolution
    • Harp JM, Hanson BL, Timm DE, et al. Asymmetries in the nucleosome core particle at 2.5 angstrom resolution. Acta Crystallogr 2000;56:1513-34.
    • (2000) Acta Crystallogr , vol.56 , pp. 1513-1534
    • Harp, J.M.1    Hanson, B.L.2    Timm, D.E.3
  • 51
    • 34748826166 scopus 로고    scopus 로고
    • A high-resolution atlas of nucleosome occupancy in yeast
    • Lee W, Tillo D, Bray N, et al. A high-resolution atlas of nucleosome occupancy in yeast. Nat Genet 2007;39(10): 1235-44.
    • (2007) Nat Genet , vol.39 , Issue.10 , pp. 1235-1244
    • Lee, W.1    Tillo, D.2    Bray, N.3
  • 52
    • 0347755531 scopus 로고    scopus 로고
    • The UCSC Table Browser data retrieval tool
    • Karolchik D, Hinrichs AS, Furey TS, et al. The UCSC Table Browser data retrieval tool. Cell 2004;32:D493-6.
    • (2004) Cell , vol.32 , pp. D493-D496
    • Karolchik, D.1    Hinrichs, A.S.2    Furey, T.S.3
  • 53
    • 79958777000 scopus 로고    scopus 로고
    • The nucleosome map of the mammalian liver
    • Li Z, Schug J, Tuteja G, et al. The nucleosome map of the mammalian liver. Nat Struct Mol Biol 2011;18(6): 742-6.
    • (2011) Nat Struct Mol Biol , vol.18 , Issue.6 , pp. 742-746
    • Li, Z.1    Schug, J.2    Tuteja, G.3
  • 54
    • 39749145198 scopus 로고    scopus 로고
    • Dynamic regulation of nucleosome positioning in the human genome
    • Schones DE, Cui K, Cuddapah S, et al. Dynamic regulation of nucleosome positioning in the human genome. Cell 2011;132(5):887-98.
    • (2011) Cell , vol.132 , Issue.5 , pp. 887-898
    • Schones, D.E.1    Cui, K.2    Cuddapah, S.3
  • 55
    • 69949132193 scopus 로고    scopus 로고
    • Dynamics and function of compact nucleosome arrays
    • Poirier MG, Oh E, Tims HS, et al. Dynamics and function of compact nucleosome arrays. Nat Struct Mol Biol 2009; 16(9):938-44.
    • (2009) Nat Struct Mol Biol , vol.16 , Issue.9 , pp. 938-944
    • Poirier, M.G.1    Oh, E.2    Tims, H.S.3
  • 56
    • 39749145198 scopus 로고    scopus 로고
    • Dynamic regulation of nucleosome positioning in the human genome
    • Schones DE, Cui K, Cuddapah S, et al. Dynamic regulation of nucleosome positioning in the human genome. Cell 2008;132:887-98.
    • (2008) Cell , vol.132 , pp. 887-898
    • Schones, D.E.1    Cui, K.2    Cuddapah, S.3
  • 57
    • 79960126724 scopus 로고    scopus 로고
    • Dynamic nucleosome positioning around functional transcription factor binding sites in the promoters of inducible NF-kappaB target Genes
    • Nie Y, Sun X. Dynamic nucleosome positioning around functional transcription factor binding sites in the promoters of inducible NF-kappaB target Genes. Bioinform Biomed Eng 2011;1-3.
    • (2011) Bioinform Biomed Eng , pp. 1-3
    • Nie, Y.1    Sun, X.2
  • 58
    • 77950262538 scopus 로고    scopus 로고
    • Nucleosome dynamics define transcriptional enhancers
    • He HH, Meyer CA, Shin H, et al. Nucleosome dynamics define transcriptional enhancers. Nat Genet 2010;42(4): 343-8.
    • (2010) Nat Genet , vol.42 , Issue.4 , pp. 343-348
    • He, H.H.1    Meyer, C.A.2    Shin, H.3
  • 59
    • 43749088127 scopus 로고    scopus 로고
    • Two strategies for gene regulation by promoter nucleosomes
    • Tirosh I, Barkai N. Two strategies for gene regulation by promoter nucleosomes. GenomeRes 2008;18:1084-91.
    • (2008) GenomeRes , vol.18 , pp. 1084-1091
    • Tirosh, I.1    Barkai, N.2
  • 60
    • 38349018723 scopus 로고    scopus 로고
    • On the relation between promoter divergence and gene expression evolution
    • Tirosh I, Weinberger A, Bezalel D, et al. On the relation between promoter divergence and gene expression evolution. Mol Syst Biol 2008;4:159.
    • (2008) Mol Syst Biol , vol.4 , pp. 159
    • Tirosh, I.1    Weinberger, A.2    Bezalel, D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.