Influence of intra-pigment vibrations on dynamics of photosynthetic exciton

Journal of Chemical Physics

Volumn 141, Issue 18, 2014, Pages

  Sato, Yoshihiro ^a   Doolittle, Brian ^a  

^a Colby College   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ENERGY TRANSFER; EXCITONS; QUANTUM THEORY; VIBRATIONS (MECHANICAL);

BACTERIOCHLOROPHYLLS; ENERGY DIFFERENCES; ENERGY TRANSFER EFFICIENCY; HUANG-RHYS FACTORS; PERTURBATIVE METHOD; REORGANIZATION ENERGIES; THEORETICAL TREATMENTS; VIBRATIONAL MODES;

ENERGY EFFICIENCY;

BACTERIOCHLOROPHYLL A;

BIOLOGICAL MODEL; CHEMISTRY; DIMERIZATION; ENERGY TRANSFER; VIBRATION;

BACTERIOCHLOROPHYLL A; DIMERIZATION; ENERGY TRANSFER; MODELS, BIOLOGICAL; VIBRATION;

EID: 84912097274     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.4901056     Document Type: Article

References (47)

1. H. van Amarongen, L. Valkunas, and R. van Grondelle, Photosynthetic Excitons (World Scientific, Singapore, 2000).
2. R. E. Blankenship, Molecular Mechanisms of Photosynthesis (Blackwell Science, 2002).
3. S. Mukamel, Principles of Nonlinear Optical Spectroscopy (Oxford University Press, Oxford, 1995).
4. G. S. Engel, T. R. Calhoun, E. L. Read, T. K. Ahn, T. Mancal, Y. C. Cheng, R. E. Blankenship, and G. R. Fleming, Nature 446, 782 (2007). 10.1038/nature05678
5. H. Lee, Y. C. Cheng, and G. R. Fleming, Science 316, 1462 (2007). 10.1126/science.1142188
6. G. Panitchayangkoon, D. Hayes, K. A. Fransted, J. R. Caram, E. Harel, R. E. Wen, J. Blankenship, and G. S. Engel, Proc. Natl. Acad. Sci. U.S.A. 107, 12766 (2010). 10.1073/pnas.1005484107
7. R. Hildner, D. Brinks, J. B. Nieder, R. J. Cogdell, and N. F. van Hulst, Science 340, 1448 (2013). 10.1126/science.1235820
8. A. Ishizaki and G. R. Fleming, Proc. Natl. Acad. Sci. U.S.A. 106, 17255 (2009). 10.1073/pnas.0908989106
9. M. Mohseni, P. Rebentrost, S. Lloyd, and A. Aspuru-Guzik, J. Chem. Phys. 129, 174106 (2008). 10.1063/1.3002335
10. F. Caruso, A. W. Chin, A. Datta, S. F. Huelga, and M. B. Plenio, J. Chem. Phys. 131, 105106 (2009). 10.1063/1.3223548
11. N. Christensson, F. Molita, J. Hauer, J. Sperling, O. Bixner, A. Nemeth, and H. F. Kauffmann, J. Phys. Chem. B 115, 5383 (2011). 10.1021/jp109442b
12. N. Christensson, H. F. Kauffmann, T. Pullerits, and T. Mančal, J. Phys. Chem. B 116, 7449 (2012). 10.1021/jp304649c
13. A. Chenu, N. Christensson, H. F. Kauffmann, and T. Mančal, Sci. Rep. 3, 2029 (2013). 10.1038/srep02029
14. V. Tiwari, W. K. Peters, and D. M. Jonas, Proc. Natl. Acad. Sci. U.S.A. 110, 1203 (2012). 10.1073/pnas.1211157110
15. P. Nalbach, J. Eckel, and M. Thorwart, New J. Phys. 12, 065043 (2010). 10.1088/1367-2630/12/6/065043
16. P. Nalbach, D. Braun, and M. Thorwart, Phys. Rev. E 84, 041926 (2011). 10.1103/PhysRevE.84.041926
17. J. S. Briggs and A. Eisfeld, Phys. Rev. E 83, 051911 (2011). 10.1103/PhysRevE.83.051911
18. W. H. Miller, J. Chem. Phys. 136, 210901 (2012). 10.1063/1.4727849
19. J. M. Womick and A. M. Moran, J. Phys. Chem. B 115, 1347 (2011). 10.1021/jp106713q
20. A. W. Chin, J. Prior, R. Rosenbach, F. Caycedo-Soler, S. F. Huelga, and M. B. Plenio, Nat. Phys. 9, 113 (2013). 10.1038/nphys2515
21. E. J. O'Reilly and A. Olaya-Castro, Nat. Commun. 5, 3012 (2014). 10.1038/ncomms4012
22. O. Kühn, T. Renger, and V. May, Chem. Phys. 204, 99 (1996). 10.1016/0301-0104(95)00448-3
23. K. R. Shelly, E. A. Carson, and W. F. Beck, J. Am. Chem. Soc. 125, 11810 (2003). 10.1021/ja0366890
24. J. Gilmore and R. H. McKenzie, Chem. Phys. Lett. 421, 266 (2006). 10.1016/j.cplett.2005.12.104
25. A. Ishizaki and G. R. Fleming, J. Chem. Phys. 130, 234110 (2009). 10.1063/1.3155214
26. A. Ishizaki, T. R. Calhoun, G. S. Schlulau-Cohen, and G. R. Fleming, Phys. Chem. Chem. Phys. 12, 7319 (2010). 10.1039/c003389h
27. N. Makri and D. E. Makarov, J. Chem. Phys. 102, 4600 (1995). 10.1063/1.469508
28. N. Makri and D. E. Makarov, J. Chem. Phys. 102, 4611 (1995). 10.1063/1.469509
29. P. Nalbach, A. Ishizaki, G. R. Fleming, and M. Thorwart, New J. Phys. 13, 063040 (2011). 10.1088/1367-2630/13/6/063040
30. V. May and O. Kühn, Charge and Energy Transfer Dynamics in Molecular Systems, 3rd revised and enlarged ed. (Wiley-VCH, Weinheim, Germany, 2011).
31. U. Weiss, Quantum Dissipative Systems, 3rd ed. (World Scientific, Singapore, 2008).
32. T. Renger and R. A. Marcus, J. Chem. Phys. 116, 9997 (2002). 10.1063/1.1470200
33. S. Jang, M. D. Newton, and R. J. Silbey, J. Phys. Chem. B 111, 6807 (2007). 10.1021/jp070111l
34. Y. C. Cheng and G. R. Fleming, Annu. Rev. Phys. Chem. 60, 241 (2009). 10.1146/annurev.physchem.040808.090259
35. T. Renger, A. Klinger, F. Steinecker, M. Schmidt am Busch, J. Numata, and F. Müh, J. Phys. Chem. B 116, 14565 (2012). 10.1021/jp3094935
36. W. H. Zurek, Phys. Rev. D 24, 1516 (1981). 10.1103/PhysRevD.24.1516
37. M. Schlosshauer, Decoherence and the Quantum-to-Classical Transition (Springer-Verlag, Berlin/Heidelberg, 2007).
38. E. Joos, H. D. Zeh, C. Kiefer, D. Giulini, J. Kupsch, and I.-O. Stamatescu, Decoherence and the Appearance of a Classical World in Quantum Theory, 2nd ed. (Springer, New York, 2003).
39. O. Giraud, P. Braun, and D. Braun, New J. Phys. 12, 063005 (2010). 10.1088/1367-2630/12/6/063005
40. S. Polyutov, O. Kühn, and T. Pullerits, Chem. Phys. 394, 21 (2012). 10.1016/j.chemphys.2011.12.006
41. E. Rivera, D. Montemayor, M. Masia, and D. F. Coker, J. Phys. Chem. B 117, 5510 (2013). 10.1021/jp4011586
42. J. Adolphs and T. Renger, Biophys. J. 91, 2778 (2006). 10.1529/biophysj.105.079483
43. C. Olbrich and U. Kleinekathöfer, J. Phys. Chem. B 114, 12427 (2010). 10.1021/jp106542v
44. S. Valleau, A. Eisfeld, and A. Aspuru-Guzik, J. Chem. Phys. 137, 224103 (2012). 10.1063/1.4769079
45. M. Aghtar, J. Strümpfer, C. Olbrich, K. Schulten, and U. Kleinekathöfer, J. Phys. Chem. B 117, 7157 (2013). 10.1021/jp311380k
46. Y. Sato and M. F. Reynolds, J. Phys. Chem. B. 118, 1229 (2014). 10.1021/jp410190n
47. T. Mančal and L. Valkunas, New J. Phys. 12, 065044 (2010). 10.1088/1367-2630/12/6/065044