Iterative path-integral algorithm versus cumulant time-nonlocal master equation approach for dissipative biomolecular exciton transport

New Journal of Physics

Volumn 13, Issue , 2011, Pages

  Nalbach, Peter ^a,b   Ishizaki, Akihito ^c,d   Fleming, Graham R ^c,d   Thorwart, Michael ^a  

^a UNIVERSITY OF HAMBURG   (Germany)

^b UNIVERSITY OF FREIBURG   (Germany)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIO-MOLECULAR; CROSSOVER REGIME; CUMULANTS; DONOR-ACCEPTOR SYSTEM; ELECTRONIC COUPLING; EXCITON TRANSPORT; EXCITONIC ENERGY; GAUSSIAN FLUCTUATIONS; MASTER EQUATIONS; NON-MARKOVIAN; NON-MARKOVIAN EFFECTS; PATH-INTEGRAL; PATH-INTEGRAL ALGORITHMS; QUANTUM DYNAMICS; QUANTUM MASTER EQUATIONS; SECOND ORDERS;

ENERGY TRANSFER; QUANTUM THEORY;

QUANTUM CHEMISTRY;

EID: 79959660576     PISSN: 13672630     EISSN: None     Source Type: Journal    
DOI: 10.1088/1367-2630/13/6/063040     Document Type: Article

References (59)

1. Blankenship R E 2002 Molecular Mechanisms of Photosynthesis (Oxford: Blackwell)
2. van Amerongen H, Valkunas L and van Grondelle R 2000 Photosynthetic Excitons (Singapore: World Scientific)
3. Engel G S, Calhoun T R, Read E L, Ahn T K, Mančal T, Cheng Y-C, Blankenship R E and Fleming G R 2007 Nature 446 782
4. Lee H, Cheng Y-C and Fleming G R 2007 Science 316 1462
5. Calhoun T R, Ginsberg N S, Schlau-Cohen G S, Cheng Y-C, Ballottari M, Bassi R and Fleming G R 2009 J. Phys. Chem. B 113 16291
6. Collini E, Wong Y C, Wilk K E, Curmi P M G, Brumer P and Scholes G 2010 Nature 463 644
7. Panitchayangkoon G, Hayes D, Fransted K A, Caram J R, Harel E, Wen J, Blankenship R E and Engel G S 2010 Proc. Natl Acad. Sci. USA 107 12766
8. Reineker P 1982 Exciton Dynamics in Molecular Crystals and Aggregates (Springer Tracts in Modern Physics vol 94) ed G Höhler (Berlin: Springer) p 111
9. Cho M 2009 Two-Dimensional Optical Spectroscopy (Boca Raton, FL: CRC Press)
10. Ishizaki A and Fleming G R 2009 J. Chem. Phys. 130 234111
11. Thorwart M, Eckel J, Reina J H, Nalbach P and Weiss S 2009 Chem. Phys. Lett. 478 234
12. Cho M, Vaswani H M, Brixner T, Stenger J and Fleming G R 2005 J. Phys. Chem. B 109 10542
13. Adolphs J and Renger T 2006 Biophys. J. 91 2778
14. Ishizaki A and Fleming G R 2009 Proc. Natl Acad. Sci. USA 106 17255
15. Milder M T W, Brüggemann B, van Grondelle R and Herek J L 2010 Photosynth. Res. 104 257
16. Hennebicq E, Beljonne D, Curutchet C, Scholes G D and Silbey R J 2009 J. Chem. Phys. 130 214505
17. Rebentrost P, Mohseni M and Aspuru-Guzik A 2009 J. Phys. Chem. B 113 9942
18. Nazir A 2009 Phys. Rev. Lett. 103 146404
19. Ishizaki A and Fleming G R 2010 New J. Phys. 12 055004
20. Chen X and Silbey R J 2010 J. Chem. Phys. 132 204503
21. Nalbach P, Eckel J and Thorwart M 2010 New J. Phys. 12 065043
22. Fassioli F, Nazir A and Olaya-Castro A 2010 J. Phys. Chem. Lett. 1 2139-43
23. Sarovar M, Ishizaki A, Fleming G R and Whaley K B 2010 Nat. Phys. 6 462
24. Caruso F, Chin A W, Datta A, Huelga S F and Plenio M B 2009 J. Chem. Phys. 131 105106
25. Caruso F, Chin A W, Datta A, Huelga S F and Plenio M B 2010 Phys. Rev. A 81 062346
26. Hossein-Nejad H and Scholes G D 2010 New J. Phys. 12 065045
27. Fassioli F and Olaya-Castro A 2010 New J. Phys. 12 085006
28. Redfield A G 1957 IBM J. Res. Dev. 1 19
29. Ishizaki A and Fleming G R 2009 J. Chem. Phys. 130 234110
30. Nalbach P and Thorwart M 2010 J. Chem. Phys. 132 194111
31. Förster Th 1948 Ann. Phys. 437 55
32. Kenkre V M 1982 Exciton Dynamics in Molecular Crystals and Aggregates (Springer Tracts in Modern Physics vol 94) ed G Höhler (Berlin: Springer) p 1
33. Palmieri B, Abramavicius D and Mukamel S 2009 J. Chem. Phys. 130 204512
34. Jang S, Cheng Y-C, Recihman D R and Eaves J D 2008 J. Chem. Phys. 129 101104
35. Jang S 2009 J. Chem. Phys. 131 164101
36. Nalbach P and Thorwart M 2009 Phys. Rev. Lett. 103 220401
37. Makri N and Makarov D E 1995 J. Chem. Phys. 102 4600
38. Makri N and Makarov D E 1995 J. Chem. Phys. 102 4611
39. Thorwart M, Reimann P, Jung P and Fox R F 1998 Chem. Phys. 235 61
40. Thorwart M, Reimann P and Hänggi P 2000 Phys. Rev. E 62 5808
41. Renger T, May V and Kühn O 2001 Phys. Rep. 3 137
42. Ishizaki A, Calhoun T R, Schlau-Cohen G S and Fleming G R 2010 Phys. Chem. Chem. Phys. 12 7319
43. Chandler D 1998 Classical and Quantum Dynamics in Condensed Phase Simulations ed B J Berne, G Ciccotti and D F Coker (Singapore: World Scientific) pp 25-49
44. Weiss U 1999 Quantum Dissipative Systems (Singapore: World Scientific)
45. Zhang W M, Meier T, Chernyak V and Mukamel S 1998 J. Chem. Phys. 108 7763
46. Zigmantas D, Read E L, Mančal T, Brixner T, Gardiner A T, Cogdell R J and Fleming G R 2006 Proc. Natl Acad. Sci. USA 103 12672
47. Read E L, Schlau-Cohen G S, Engel G S, Wen J, Blankenship R E and Fleming G R 2008 Biophys. J. 95 847
48. Leggett A J, Chakravarty S, Dorsey A T, Fisher M P A, Garg A and Zwerger W 1987 Rev. Mod. Phys. 59 1
49. Olbrich C, Strümpfer J, Schulten K and Kleinekathöfer U 2011 J. Phys. Chem. B 115 758
50. Prior J, Chin A W, Huelga S F and Plenio M B 2010 Phys. Rev. Lett. 105 050404
51. Takagahara T, Hanamura E and Kubo R 1977 J. Phys. Soc. Japan 43 811
52. Tanimura Y and Kubo R 1989 J. Phys. Soc. Japan 58 101
53. Tanimura T 2006 J. Phys. Soc. Japan 75 082001
54. Ishizaki A and Tanimura Y 2005 J. Phys. Soc. Japan 74 3131
55. Meier C and Tannor D J 1999 J. Chem. Phys. 111 3365
56. Xu R-X and Yan Y 2007 Phys. Rev. E 75 031107
57. Nalbach P, Braun D, and Thorwart M 2011, arXiv:1104.2031
58. Hughes K H, Christ C D and Burghardt I 2009 J. Chem. Phys. 131 024109
59. Vacchini B and Breuer H-P 2010 Phys. Rev. A 81 042103