Resonant coherence in photosynthetic electronic energy transfer by site-dependent pigment-protein interactions

Journal of Physical Chemistry B

Volumn 118, Issue 5, 2014, Pages 1229-1233

  Sato, Yoshihiro ^a   Reynolds, Meredith F ^a  

^a University of Connecticut   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DONOR AND ACCEPTOR; ELECTRONIC ENERGY TRANSFER; ELECTRONIC EXCITATION ENERGY TRANSFERS; ENERGY MISMATCH; PATH INTEGRAL METHOD; PIGMENT-PROTEIN COMPLEXES; QUANTUM COHERENCE; STATIC DISORDER;

ENERGY TRANSFER; QUANTUM THEORY;

PROTEINS;

BACTERIAL PROTEIN; FMO BACTERIOCHLOROPHYLL PROTEIN, BACTERIA; PROTEIN;

ARTICLE; CHEMISTRY; CHLOROBIUM; ELECTRON; ENERGY TRANSFER; LIGHT HARVESTING SYSTEM; METABOLISM; MOLECULAR DYNAMICS; PROTEIN DOMAIN; QUANTUM THEORY;

BACTERIAL PROTEINS; CHLOROBIUM; ELECTRONS; ENERGY TRANSFER; LIGHT-HARVESTING PROTEIN COMPLEXES; MOLECULAR DYNAMICS SIMULATION; PROTEIN INTERACTION DOMAINS AND MOTIFS; PROTEINS; QUANTUM THEORY;

EID: 84893842733     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp410190n     Document Type: Article

References (29)

1. Blankenship, R. E. Molecular Mechanisms of Photosynthesis; Blackwell Science: Oxford, 2002.
2. Mohseni, M.; Rebentrost, P.; Lloyd, S.; Aspuru-Guzik, A. Environment-Assisted Quantum Walks in Photosynthetic Energy Transfer J. Chem. Phys. 2008, 129, 174106/1-174106/9
3. Caruso, F.; Chin, A. W.; Datta, A.; Huelga, S. F.; Plenio, M. B. Highly Efficient Energy Excitation Transfer in Light-Harvesting Complexes: The Fundamental Role of Noise-Assisted Transport J. Chem. Phys. 2009, 131, 105106/1-105106/15
4. Engel, G. S.; Calhoun, T. R.; Read, E. L.; Ahn, T. K.; Mancal, T.; Cheng, Y. C.; Blankenship, R. E.; Fleming, G. R. Evidence for Wavelike Energy Transfer through Quantum Coherence in Photosynthetic Systems Nature 2007, 446, 782-786
5. Lee, H.; Cheng, Y. C.; Fleming, G. R. Coherence Dynamics in Photsynthesis: Protein Protection of Excitonic Coherence Science 2007, 316, 1462-1465
6. Panitchayangkoon, G.; Hayes, D.; Fransted, K. A.; Caram, J. R.; Harel, E.; Wen, R. E.; Blankenship, J.; Engel, G. S. Long-Lived Quantum Coherence in Photo-synthetic Complexes at Physiological Temperature Proc. Natl. Acad. Sci. U. S. A. 2010, 107, 12766-12770
7. Hildner, R.; Brinks, D.; Nieder, J. B.; Cogdell, R. J.; van Hulst, N. F. Quantum Coherent Energy Transfer over Varying Pathways in Single Light-Harvesting Complexes Science 2013, 340, 1448-1451
8. van Amarongen, H.; Valkunas, L.; van Grondelle, R. Photosynthetic Excitons; World Scientific: Singapore, 2000.
9. Breuer, H.-P.; Petruccione, F. The Theory of Open Quantum Systems; Oxford University Press: Oxford, 2002.
10. Gilmore, J.; McKenzie, R. H. Criteria for Quantum Coherent Transfer of Excitons Between Chromophores in a Polar Solvent Chem. Phys. Lett. 2006, 421, 266-271
11. Ishizaki, A.; Fleming, G. R. On the Adequacy of the Redfield Equation and Related Approaches to the Study of Quantum Dynamics in Electronic Energy Transfer J. Chem. Phys. 2009, 130, 234110/1-234110/8
12. Nalbach, P.; Thorwart, M. Multiphonon Transitions in the Biomolecular Energy Transfer Dynamics J. Chem. Phys. 2010, 132, 194111/1-194111/8
13. Ishizaki, A.; Calhoun, T. R.; Schlulau-Cohen, G. S.; Fleming, G. R. Quantum Coherence and Its Interplay with Protein Environments in Photosynthetic Electronic Energy Transfer Phys. Chem. Chem. Phys. 2010, 12, 7321-7337
14. Olbrich, C.; Strumpfer, J.; Schulten, K.; Kleinekathöfer, U. Quest for Spatially Correlated Fluctuations in the FMO Light-Harvesting Complex J. Phys. Chem. B 2011, 115, 758-764
15. Renger, T.; Klinger, A.; Steinecker, F.; Schmidt am Busch, M.; Numata, J.; Müh, F. Normal Mode Analysis of the Spectral Density of the Fenna-Matthews-Olson Light-Harvesting Protein: How the Protein Dissipates the Excess Energy of Excitons J.Phys. Chem. B 2012, 116, 14565-14580
16. Olbrich, C.; Kleinekathöfer, U. Time-Dependent Atomistic View on the Electronic Re-laxation in Light-Harvesting System II J. Phys. Chem. B 2010, 114, 12427-12437
17. Christensson, N.; Kauffmann, H. F.; Pullerits, T.; Mančal, T. Origin of Long-Lived Coherences in Light-Harvesting Complexes J. Phys. Chem. B 2012, 116, 7449-7454
18. May, V.; Kühn, O. Charge and Energy Transfer Dynamics in Molecular Systems, 3 rd, revised and enlarged ed.; Wiley-VCH: Weinheim, Germany, 2011.
19. Weiss, U. Quantum Dissipative Systems, 3 rd ed.; World Scientific, Singapore, 2008.
20. Renger, T.; Marcus, R. A. On the Relation of Protein Dynamics and Exciton Relaxation in Pigment-Protein Complexes: An Estimation of the Spectral Density and a Theory for the Calculation of Optical Spectra J. Chem. Phys. 2002, 116, 9997-10019
21. Jang, S.; Newton, M. D.; Silbey, R. J. Multichromophoric Förster Resonance Energy Transfer from B800 to B850 in the Light Harvesting Complex 2: Evidence for Subtle Energetic Optimization by Purple Bacteria J. Phys. Chem. B 2007, 111, 6807-6814
22. Makri, N.; Makarov, D. E. Tensor Porpagator for Iterative Quantum Time Evolution of Reduced Density Matrices. I. Theory J. Chem. Phys. 1995, 102, 4600-4610
23. Makri, N.; Makarov, D. E. Tensor Porpagator for Iterative Quantum Time Evolution of Reduced Density Matrices. II. Numerical Methodology J. Chem. Phys. 1995, 102, 4611-4618
24. Nalbach, P.; Eckel, J.; Thorwart, M. Quantum Coherent Biomolecular Energy Transfer with Spatially Correlated Fluctuations New. J. Phys. 2010, 12, 065043/1-065043/18
25. Nalbach, P.; Ishizaki, A.; Fleming, G. R.; Thorwart, M. Iterative Path-Integral Algorithm Versus Cumulant Time-Nonlocal Master Equation Approach for Dissipative Biomolecular Exciton Transport New. J. Phys. 2011, 13, 063040/1-063040/13
26. Valleau, S.; Eisfeld, A.; Aspuru-Guzik, A. On the Alternatives for Bath Correlators and Spectral Densities from Mixed Quantum-Classical Simulations J. Chem. Phys. 2012, 137, 224103-224113
27. Aghtar, M.; Strumpfer, J.; Olbrich, C.; Schulten, K.; Kleinekathöfer, U. The FMO Complex in a Glycerol-Water Mixture J. Phys. Chem. B 2013, 117, 7157-7163
28. Rivera, E.; Montemayor, D.; Masia, M.; Coker, D. F. Influence of Site-Dependent Pigment-Protein Interactions on Excitation Energy Transfer in Photosynthetic Light Harvesting J. Phys. Chem. B 2013, 117, 5510-5521
29. Mukamel, S. Principles of Nonlinear Optical Spectroscopy; Oxford University Press: Oxford, 1995.