A dual DNA biosensor based on two redox couples with a hydrogel sensing platform functionalized with carboxyl groups and gold nanoparticles

Sensors and Actuators, B: Chemical

Volumn 208, Issue , 2015, Pages 220-227

  Kowalczyk, Agata ^a   Wagner, Barbara ^a   Karbarz, Marcin ^a   Nowicka, Anna M ^a  

^a UNIVERSITY OF WARSAW   (Poland)

Author keywords

DNA biosensor; Dual DNA targets; LA ICP MS; pNIPA; Redox probe; Voltammetric detection

Indexed keywords

ACRYLIC MONOMERS; DNA; FIBER OPTIC SENSORS; GOLD; HYDROGELS; KETONES; METAL NANOPARTICLES; ORGANOMETALLICS; PROBES;

DNA BIOSENSORS; DNA TARGETS; LA-ICP-MS; PNIPA; REDOX PROBE; VOLTAMMETRIC DETECTION;

BIOSENSORS;

EID: 84911909726     PISSN: 09254005     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.snb.2014.11.029     Document Type: Article

References (44)

1. E. Zappelli, S. Daniele, M.P. Abbracchio, C. Martini, and M.L. Trincavelli A. Rapid and efficient immunoenzymatic assay to detect receptor protein interactions: G protein-coupled receptors Int. J. Mol. Sci. 15 4 2014 6252 6264
2. M.T. Castañeda, A. Merkoçi, M. Pumera, and S. Alegret Electrochemical genosensors for biomedical applications based on gold nanoparticles Biosens. Bioelectron. 22 2007 1961 1967
3. L.V. Hai, S. Reisberg, A. Chevillot-Biraud, V. Noel, M.C. Pham, and B. Piro Simultaneous electroreduction of different diazonium salts for direct electrochemical DNA biosensor development Electrochim. Acta 2014 10.1016/j.electacta.2014.01.159
4. D.-J. Chung, S.-H. Oh, S. Komathi, A.I. Gopalan, K.-P. Lee, and S.-H. Choi One-step modification of various electrode surfaces using diazonium salt compounds and the application of this technology to electrochemical DNA (E-DNA) sensors Electrochim. Acta 76 2012 394 403
5. F. Barriere, and A.J. Downard Covalent modification of graphitic carbon substrates by non-electrochemical methods J. Solid State Electrochem. 12 2008 1231 1244
6. M.M.S. Silva, I.T. Cavalcanti, M. Fátima Barroso, M.G.F. Sales, and R. Fireman Dutra Gold electrode modified by self-assembled monolayers of thiols to determine DNA sequences hybridization J. Chem. Sci. 122 2010 911 917
7. D. Irving, P. Gong, and R. Levicky DNA surface hybridization: comparison of theory and experiment J. Phys. Chem. B 114 2010 7631 7640
8. A.M. Nowicka, M. Fau, T. Rapecki, and M. Donten Polypyrrole-Au nanoparticles composite as suitable platform for DNA biosensor with electrochemical impedance spectroscopy detection Electrochim. Acta 2014 10.1016/j.electacta. 2014.03187
9. E. Spain, T.E. Keyes, and R.J. Forster Polypyrrole-gold nanoparticle composites for highly sensitive DNA detection Electrochim. Acta 109 2013 102 109
10. Y. Ma, S.R. Ali, A.S. Dodoo, and H. He Enhanced sensitivity for biosensors: multiple functions of DNA-wrapped single-walled carbon nanotubes in self-doped polyaniline nanocomposites J. Phys. Chem. B 110 2006 16359 16365
11. A. Kowalczyk, M. Fau, M. Karbarz, M. Donten, Z. Stojek, and A.M. Nowicka Hydrogel with chains functionalized with carboxyl groups as universal 3d platform in DNA biosensors Biosens. Bioelectron. 54 2014 222 228
12. H. Tan, Ch. Xiao, J. Sun, D. Xiong, and X. Hu Biological self-assembly of injectable hydrogel as cell scaffold via specific nucleobase pairing Chem. Commun. 48 2012 10289 10291
13. H. Wang, Z. Wang, X. Yi, J. Long, J. Liu, and Z. Yang Anti-degradation of a recombinant complex protein by incorporation in small molecular hydrogels Chem. Commun. 47 2011 955 957
14. R. Hu, T. Liu, X.-B. Zhang, S.-Y. Huan, C. Wu, T. Fu, and W. Tan Multicolor fluorescent biosensor for multiplexed detection of DNA Anal. Chem. 83 2014 5009 5016
15. W. Wang, Q. Hao, W. Wang, L. Bao, J. Lei, Q. Wang, and H. Ju Quantum dot-functionalized porous ZnO nanosheets as a visible light induced photoelectrochemical platform for DNA detection Nanoscale 6 2014 2710 2717
16. S. Akhtar, M. Strömberg, T. Zardán Gómez de la Torre, C. Russell, K. Gunnarsson, M. Nilsson, P. Svedlindh, M. Stromme, and K. Leifer Real-space transmission electron microscopy investigations of attachment of functionalized magnetic nanoparticles to DNA-coils acting as a biosensor J. Phys. Chem. B 114 2010 13255 13262
17. K. Kiilerich-Pedersen, J. Daprà, S. Cherré, and N. Rozlosnik High sensitivity point-of-care device for direct virus diagnostics Biosens. Bioelectron. 49 2013 374 379
18. K. Hsieh, A.S. Patterson, B.S. Ferguson, K.W. Plaxco, and H.T. Soh Rapid, sensitive, and quantitative detection of pathogenic DNA at the point of care through microfluidic electrochemical quantitative loop-mediated isothermal amplification Angew. Chem. Int. Ed. 51 2012 4896 4900
19. M. Hepel Interfacial Electrochemistry 1999 Marcel Dekker New York
20. G. Sauerbrey Use of quartz crystal vibrator for weighting thin films on a microbalance Z. Phys. 155 1959 206 222
21. S. Bruckenstein, and M. Shay Experimental aspects of use of the quartz crystal microbalance in solution Electrochim. Acta 30 1985 1295 1300
22. H.O. Finklea, S. Avery, M. Lynch, and T. Furtsch Blocking oriented monolayers of alkyl mercaptans on gold electrodes Langmuir 3 1987 409 413
23. B. Wagner, and W. Jędral Open ablation cell for LA-ICP-MS investigations of historic objects J. Anal. At. Spectrom. 26 2011 2058 2063
24. J. Liu, J.J. Gooding, and M.N. Paddon-Row Unusually rapid heterogeneous electron transfer through a saturated bridge 18 bonds in length Chem. Commun. 5 2005 631 633
25. N. Hüsken, M. Gębala, W. Schuhmann, and N. Metzler-Nolte A simple-electrode, dual-potential ferrocene-PNA biosensor for the detection of DNA ChemBioChem 11 2010 1754 1761
26. E.L.S. Wong, and J.J. Gooding Electronic detection of target nucleic acids by a 2,6-disulfonic acid anthraquinone intercalator Anal. Chem. 75 2003 3845 3852
27. J. Kypr, I. Kejnovská, D. Renčiuk, and M. Vorlíčková Circular dichroism and conformational polymorphism of DNA Nucleic Acids Res. 37 2009 1713 1725
28. W.C. Johnson Circular Dichroism: Principles and Applications 2000 Wiley-VCH New York
29. C.C. Garcia, H. Lindner, and K. Niemax Laser ablation inductively coupled plasma mass spectrometry-current shortcomings, practical suggestions for improving performance, and experiments to guide future development J. Anal. Atomic Spectrom. 24 2009 14 26
30. J. Koch, and D. Günther Review of the state-of-the-art of laser ablation inductively coupled plasma mass spectrometry Appl. Spectrosc. 65 5 2011 155A 162A
31. M. Fau, A. Kowalczyk, P. Olejnik, and A.M. Nowicka Tight and uniform layer of covalently bound aminoethylophenyl groups perpendicular to gold surface for attachment of biomolecules Anal. Chem. 83 2011 9281 9288
32. M. Gebala, and W. Schuhmann Controlled orientation of DNA in a binary SAM as a key for the successful determination of DNA hybridization by means of electrochemical impedance spectroscopy Chem. Phys. Chem. 11 2010 2887 2895
33. E.R. Holmlin, P.J. Dandliker, and J.K. Barton Charge transfer through the DNA base stack Angew. Chem. Int. Ed. Engl. 36 1997 2714 2730
34. C.G. Pheeney, and J.K. Barton DNA. electrochemistry with tethered methylene blue Langmuir 28 2012 7063 7070
35. P.A. Sontz, N.B. Muren, and J.K. Barton DNA charge transport for sensing and signaling Acc. Chem. Res. 45 10 2012 1792 1800
36. A. Danhel, V. Raindlova, L. Havran, J. Barek, M. Hocek, and M. Fojta Voltammetric study of dsDNA modified by multi-redox label based on N-methyl-4-hydrazino-7-nitrobenzofurazan Electrochim. Acta 129 2014 348 357
37. J. Balintová, R. Pohl, P. Horáková, P. Vidláková, L. Havran, M. Fojta, and M. Hocek Anthraquinone as a redox label for DNA: synthesis, enzymatic incorporation, and electrochemistry of anthraquinone-modified nucleosides, nucleotides, and DNA Chem. Eur. J. 17 2011 14063 14073
38. P. Horáková, H. Macíčková-Cahová, H. Pivoňková, J. Špaček, L. Havran, M. Hocek, and M. Fojta Tail-labelling of DNA probes using modified deoxynucleotide triphosphates and terminal deoxynucleotidyl tranferase. Application in electrochemical DNA hybridization and protein-DNA binding assays Org. Biomol. Chem. 9 2011 1366 1371
39. J. Balintová, M. Plucnara, P. Vidláková, R. Pohl, L. Havran, M. Fojta, and M. Hocek Benzofurazane as a new redox label for electrochemical detection of DNA: towards multipotential redox coding of DNA bases Chem. Eur. J. 19 2013 12720 12731
40. N. Peyret, P.A. Senevirante, H.T. Allawi, and J. SantaLucia Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A.A, C.C, G.G, and T.T mismatches Biochemistry 38 1999 3468 3477
41. B.A. Luxon, and D.G. Gorenstein Comparison of X-ray and NMR-determined nucleic acid structures Methods Enzymol. 261 1995 45 73
42. L.M. Boon, and J.K. Barton Charge transport in DNA Curr. Opin. Struct. Biol. 12 2002 320 329
43. 1H NMR determination of base-pair lifetimes in oligonucleotides containing single base mismatches Nucleic Acid Res. 30 2002 4740 4750
44. X. Zhang, H. Su, S. Bi, S. Li, S. Zhang, DNA-based amplified electrical bio-barcodeassay for one-pot detection of two target DNAs, Biosens. Bioelectron. 24 (2009)27302734.