-
1
-
-
84899134190
-
CRISPR-Cas systems: Prokaryotes upgrade to adaptive immunity
-
Barrangou R, Marraffini LA (2014) CRISPR-Cas systems: Prokaryotes upgrade to adaptive immunity. Mol Cell 54(2):234-244.
-
(2014)
Mol Cell
, vol.54
, Issue.2
, pp. 234-244
-
-
Barrangou, R.1
Marraffini, L.A.2
-
2
-
-
79959319829
-
CRISPR-based adaptive immune systems
-
Terns MP, Terns RM (2011) CRISPR-based adaptive immune systems. Curr Opin Microbiol 14(3):321-327.
-
(2011)
Curr Opin Microbiol
, vol.14
, Issue.3
, pp. 321-327
-
-
Terns, M.P.1
Terns, R.M.2
-
3
-
-
84857097177
-
RNA-guided genetic silencing systems in bacteria and archaea
-
Wiedenheft B, Sternberg SH, Doudna JA (2012) RNA-guided genetic silencing systems in bacteria and archaea. Nature 482(7385):331-338.
-
(2012)
Nature
, vol.482
, Issue.7385
, pp. 331-338
-
-
Wiedenheft, B.1
Sternberg, S.H.2
Doudna, J.A.3
-
4
-
-
84878936806
-
CRISPR-mediated adaptive immune systems in bacteria and archaea
-
Sorek R, Lawrence CM, Wiedenheft B (2013) CRISPR-mediated adaptive immune systems in bacteria and archaea. Annu Rev Biochem 82:237-266.
-
(2013)
Annu Rev Biochem
, vol.82
, pp. 237-266
-
-
Sorek, R.1
Lawrence, C.M.2
Wiedenheft, B.3
-
5
-
-
84879584456
-
CRISPR interference: A structural perspective
-
Reeks J, Naismith JH, White MF (2013) CRISPR interference: A structural perspective. Biochem J 453(2):155-166.
-
(2013)
Biochem J
, vol.453
, Issue.2
, pp. 155-166
-
-
Reeks, J.1
Naismith, J.H.2
White, M.F.3
-
6
-
-
84902533278
-
Unravelling the structural and mechanistic basis of CRISPR-Cas systems
-
Van der Oost J, Westra ER, Jackson R, Wiedenheft B (2014) Unravelling the structural and mechanistic basis of CRISPR-Cas systems. Nat Rev Microbiol 12(7):479-492.
-
(2014)
Nat Rev Microbiol
, vol.12
, Issue.7
, pp. 479-492
-
-
Van Der Oost, J.1
Westra, E.R.2
Jackson, R.3
Wiedenheft, B.4
-
7
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
Barrangou R, et al. (2007) CRISPR provides acquired resistance against viruses in prokaryotes. Science 315(5819):1709-1712.
-
(2007)
Science
, vol.315
, Issue.5819
, pp. 1709-1712
-
-
Barrangou, R.1
-
8
-
-
78149261827
-
The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA
-
Garneau JE, et al. (2010) The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA. Nature 468(7320):67-71.
-
(2010)
Nature
, vol.468
, Issue.7320
, pp. 67-71
-
-
Garneau, J.E.1
-
9
-
-
49649114086
-
Small CRISPR RNAs guide antiviral defense in prokaryotes
-
Brouns SJ, et al. (2008) Small CRISPR RNAs guide antiviral defense in prokaryotes. Science 321(5891):960-964.
-
(2008)
Science
, vol.321
, Issue.5891
, pp. 960-964
-
-
Brouns, S.J.1
-
10
-
-
58049191229
-
Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes
-
Carte J, Wang R, Li H, Terns RM, Terns MP (2008) Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes. Genes Dev 22(24):3489-3496.
-
(2008)
Genes Dev
, vol.22
, Issue.24
, pp. 3489-3496
-
-
Carte, J.1
Wang, R.2
Li, H.3
Terns, R.M.4
Terns, M.P.5
-
11
-
-
79953250082
-
CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
-
Deltcheva E, et al. (2011) CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature 471(7340):602-607.
-
(2011)
Nature
, vol.471
, Issue.7340
, pp. 602-607
-
-
Deltcheva, E.1
-
12
-
-
84866859751
-
Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria
-
Gasiunas G, Barrangou R, Horvath P, Siksnys V (2012) Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria. Proc Natl Acad Sci USA 109(39):E2579-E2586.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.39
, pp. E2579-E2586
-
-
Gasiunas, G.1
Barrangou, R.2
Horvath, P.3
Siksnys, V.4
-
13
-
-
79955574254
-
Structural basis for CRISPR RNA-guided DNA recognition by Cascade
-
Jore MM, et al. (2011) Structural basis for CRISPR RNA-guided DNA recognition by Cascade. Nat Struct Mol Biol 18(5):529-536.
-
(2011)
Nat Struct Mol Biol
, vol.18
, Issue.5
, pp. 529-536
-
-
Jore, M.M.1
-
14
-
-
70449753811
-
RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex
-
Hale CR, et al. (2009) RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex. Cell 139(5):945-956.
-
(2009)
Cell
, vol.139
, Issue.5
, pp. 945-956
-
-
Hale, C.R.1
-
15
-
-
84865704094
-
Cas5d protein processes pre-crRNA and assembles into a cascade-like interference complex in subtype I-C/Dvulg CRISPR-Cas system
-
Nam KH, et al. (2012) Cas5d protein processes pre-crRNA and assembles into a cascade-like interference complex in subtype I-C/Dvulg CRISPR-Cas system. Structure 20(9):1574-1584.
-
(2012)
Structure
, vol.20
, Issue.9
, pp. 1574-1584
-
-
Nam, K.H.1
-
16
-
-
76649135130
-
Mycobacterium tuberculosis complex CRISPR genotyping: Improving efficiency, throughput and discriminative power of 'spoligotyping' with new spacers and a microbead-based hybridization assay
-
Zhang J, et al. (2010) Mycobacterium tuberculosis complex CRISPR genotyping: Improving efficiency, throughput and discriminative power of 'spoligotyping' with new spacers and a microbead-based hybridization assay. J Med Microbiol 59(Pt 3):285-294.
-
(2010)
J Med Microbiol
, vol.59
, pp. 285-294
-
-
Zhang, J.1
-
17
-
-
84885334898
-
Structure and activity of the RNA-targeting Type III-B CRISPRCas complex of Thermus thermophilus
-
Staals RH, et al. (2013) Structure and activity of the RNA-targeting Type III-B CRISPRCas complex of Thermus thermophilus. Mol Cell 52(1):135-145.
-
(2013)
Mol Cell
, vol.52
, Issue.1
, pp. 135-145
-
-
Staals, R.H.1
-
18
-
-
84885355637
-
Structure of an RNA silencing complex of the CRISPR-Cas immune system
-
Spilman M, et al. (2013) Structure of an RNA silencing complex of the CRISPR-Cas immune system. Mol Cell 52(1):146-152.
-
(2013)
Mol Cell
, vol.52
, Issue.1
, pp. 146-152
-
-
Spilman, M.1
-
19
-
-
79958754524
-
Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE)
-
Lintner NG, et al. (2011) Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE). J Biol Chem 286(24):21643-21656.
-
(2011)
J Biol Chem
, vol.286
, Issue.24
, pp. 21643-21656
-
-
Lintner, N.G.1
-
20
-
-
84869232519
-
Native tandem and ion mobility mass spectrometry highlight structural and modular similarities in clustered-regularly-interspaced shot-palindromicrepeats (CRISPR)-associated protein complexes from Escherichia coli and Pseudomonas aeruginosa
-
van Duijn E, et al. (2012) Native tandem and ion mobility mass spectrometry highlight structural and modular similarities in clustered-regularly-interspaced shot-palindromicrepeats (CRISPR)-associated protein complexes from Escherichia coli and Pseudomonas aeruginosa. Mol Cell Proteomics 11(11):1430-1441.
-
(2012)
Mol Cell Proteomics
, vol.11
, Issue.11
, pp. 1430-1441
-
-
Van Duijn, E.1
-
21
-
-
84865070369
-
A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
-
Jinek M, et al. (2012) A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337(6096):816-821.
-
(2012)
Science
, vol.337
, Issue.6096
, pp. 816-821
-
-
Jinek, M.1
-
22
-
-
84893157352
-
Structures of Cas9 endonucleases reveal RNA-mediated conformational activation
-
Jinek M, et al. (2014) Structures of Cas9 endonucleases reveal RNA-mediated conformational activation. Science 343(6176):1247997.
-
(2014)
Science
, vol.343
, Issue.6176
, pp. 1247997
-
-
Jinek, M.1
-
23
-
-
84896733529
-
Crystal structure of Cas9 in complex with guide RNA and target DNA
-
Nishimasu H, et al. (2014) Crystal structure of Cas9 in complex with guide RNA and target DNA. Cell 156(5):935-949.
-
(2014)
Cell
, vol.156
, Issue.5
, pp. 935-949
-
-
Nishimasu, H.1
-
24
-
-
84895871173
-
DNA interrogation by the CRISPR RNA-guided endonuclease Cas9
-
Sternberg SH, Redding S, Jinek M, Greene EC, Doudna JA (2014) DNA interrogation by the CRISPR RNA-guided endonuclease Cas9. Nature 507(7490):62-67.
-
(2014)
Nature
, vol.507
, Issue.7490
, pp. 62-67
-
-
Sternberg, S.H.1
Redding, S.2
Jinek, M.3
Greene, E.C.4
Doudna, J.A.5
-
25
-
-
84885336337
-
Structure of the CRISPR interference complex CSM reveals key similarities with cascade
-
Rouillon C, et al. (2013) Structure of the CRISPR interference complex CSM reveals key similarities with cascade. Mol Cell 52(1):124-134.
-
(2013)
Mol Cell
, vol.52
, Issue.1
, pp. 124-134
-
-
Rouillon, C.1
-
26
-
-
84856778250
-
Structure and mechanism of the CMR complex for CRISPRmediated antiviral immunity
-
Zhang J, et al. (2012) Structure and mechanism of the CMR complex for CRISPRmediated antiviral immunity. Mol Cell 45(3):303-313.
-
(2012)
Mol Cell
, vol.45
, Issue.3
, pp. 303-313
-
-
Zhang, J.1
-
27
-
-
84873571066
-
In vitro reconstitution of Cascade-mediated CRISPR immunity in Streptococcus thermophilus
-
Sinkunas T, et al. (2013) In vitro reconstitution of Cascade-mediated CRISPR immunity in Streptococcus thermophilus. EMBO J 32(3):385-394.
-
(2013)
EMBO J
, vol.32
, Issue.3
, pp. 385-394
-
-
Sinkunas, T.1
-
28
-
-
84861996069
-
CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3
-
Westra ER, et al. (2012) CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3. Mol Cell 46(5):595-605.
-
(2012)
Mol Cell
, vol.46
, Issue.5
, pp. 595-605
-
-
Westra, E.R.1
-
29
-
-
84881256166
-
In vitro reconstitution of an Escherichia coli RNA-guided immune system reveals unidirectional, ATP-dependent degradation of DNA target
-
Mulepati S, Bailey S (2013) In vitro reconstitution of an Escherichia coli RNA-guided immune system reveals unidirectional, ATP-dependent degradation of DNA target. J Biol Chem 288(31):22184-22192.
-
(2013)
J Biol Chem
, vol.288
, Issue.31
, pp. 22184-22192
-
-
Mulepati, S.1
Bailey, S.2
-
30
-
-
84899794031
-
CasA mediates Cas3-catalyzed target degradation during CRISPR RNA-guided interference
-
Hochstrasser ML, et al. (2014) CasA mediates Cas3-catalyzed target degradation during CRISPR RNA-guided interference. Proc Natl Acad Sci USA 111(18):6618-6623.
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, Issue.18
, pp. 6618-6623
-
-
Hochstrasser, M.L.1
-
32
-
-
79956157571
-
Evolution and classification of the CRISPR-Cas systems
-
Makarova KS, et al. (2011) Evolution and classification of the CRISPR-Cas systems. Nat Rev Microbiol 9(6):467-477.
-
(2011)
Nat Rev Microbiol
, vol.9
, Issue.6
, pp. 467-477
-
-
Makarova, K.S.1
-
33
-
-
79953779608
-
Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system
-
Sinkunas T, et al. (2011) Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system. EMBO J 30(7):1335-1342.
-
(2011)
EMBO J
, vol.30
, Issue.7
, pp. 1335-1342
-
-
Sinkunas, T.1
-
34
-
-
81255160844
-
Structure and activity of the Cas3 HD nuclease MJ0384, an effector enzyme of the CRISPR interference
-
Beloglazova N, et al. (2011) Structure and activity of the Cas3 HD nuclease MJ0384, an effector enzyme of the CRISPR interference. EMBO J 30(22):4616-4627.
-
(2011)
EMBO J
, vol.30
, Issue.22
, pp. 4616-4627
-
-
Beloglazova, N.1
-
35
-
-
80052400382
-
Structural and biochemical analysis of nuclease domain of clustered regularly interspaced short palindromic repeat (CRISPR)-associated protein 3 (Cas3)
-
Mulepati S, Bailey S (2011) Structural and biochemical analysis of nuclease domain of clustered regularly interspaced short palindromic repeat (CRISPR)-associated protein 3(Cas3). J Biol Chem 286(36):31896-31903.
-
(2011)
J Biol Chem
, vol.286
, Issue.36
, pp. 31896-31903
-
-
Mulepati, S.1
Bailey, S.2
-
36
-
-
84868125172
-
Cascade-mediated binding and bending of negatively supercoiled DNA
-
Westra ER, et al. (2012) Cascade-mediated binding and bending of negatively supercoiled DNA. RNA Biol 9(9):1134-1138.
-
(2012)
RNA Biol
, vol.9
, Issue.9
, pp. 1134-1138
-
-
Westra, E.R.1
-
37
-
-
69749126977
-
Structure of the Yeast DEAD box protein Mss116p reveals two wedges that crimp RNA
-
Del Campo M, Lambowitz AM (2009) Structure of the Yeast DEAD box protein Mss116p reveals two wedges that crimp RNA. Mol Cell 35(5):598-609.
-
(2009)
Mol Cell
, vol.35
, Issue.5
, pp. 598-609
-
-
Del Campo, M.1
Lambowitz, A.M.2
-
38
-
-
48249113056
-
Translocation and unwinding mechanisms of RNA and DNA helicases
-
Pyle AM (2008) Translocation and unwinding mechanisms of RNA and DNA helicases. Annual Rev Biophys 37:317-336.
-
(2008)
Annual Rev Biophys
, vol.37
, pp. 317-336
-
-
Pyle, A.M.1
-
39
-
-
76249111702
-
Three conformational snapshots of the hepatitis C virus NS3 helicase reveal a ratchet translocation mechanism
-
Gu M, Rice CM (2010) Three conformational snapshots of the hepatitis C virus NS3 helicase reveal a ratchet translocation mechanism. Proc Natl Acad Sci USA 107(2):521-528.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.2
, pp. 521-528
-
-
Gu, M.1
Rice, C.M.2
-
40
-
-
34447132375
-
Structural basis for DNA duplex separation by a superfamily-2 helicase
-
Büttner K, Nehring S, Hopfner KP (2007) Structural basis for DNA duplex separation by a superfamily-2 helicase. Nat Struct Mol Biol 14(7):647-652.
-
(2007)
Nat Struct Mol Biol
, vol.14
, Issue.7
, pp. 647-652
-
-
Büttner, K.1
Nehring, S.2
Hopfner, K.P.3
-
41
-
-
37349023165
-
Crystal structure of the NS3 protease-helicase from dengue virus
-
Luo D, et al. (2008) Crystal structure of the NS3 protease-helicase from dengue virus. J Virol 82(1):173-183.
-
(2008)
J Virol
, vol.82
, Issue.1
, pp. 173-183
-
-
Luo, D.1
-
42
-
-
77956926253
-
A structural model for the DEAD box helicase YxiN in solution: Localization of the RNA binding domain
-
Karow AR, Klostermeier D (2010) A structural model for the DEAD box helicase YxiN in solution: Localization of the RNA binding domain. J Mol Biol 402(4):629-637.
-
(2010)
J Mol Biol
, vol.402
, Issue.4
, pp. 629-637
-
-
Karow, A.R.1
Klostermeier, D.2
-
43
-
-
80053169737
-
Structures of the RNA-guided surveillance complex from a bacterial immune system
-
Wiedenheft B, et al. (2011) Structures of the RNA-guided surveillance complex from a bacterial immune system. Nature 477(7365):486-489.
-
(2011)
Nature
, vol.477
, Issue.7365
, pp. 486-489
-
-
Wiedenheft, B.1
-
44
-
-
84861990812
-
Mechanism of foreign DNA selection in a bacterial adaptive immune system
-
Sashital DG, Wiedenheft B, Doudna JA (2012) Mechanism of foreign DNA selection in a bacterial adaptive immune system. Mol Cell 46(5):606-615.
-
(2012)
Mol Cell
, vol.46
, Issue.5
, pp. 606-615
-
-
Sashital, D.G.1
Wiedenheft, B.2
Doudna, J.A.3
-
45
-
-
80052698473
-
Helicase dissociation and annealing of RNA-DNA hybrids by Escherichia coli Cas3 protein
-
Howard JA, Delmas S, Ivančić-Baće I, Bolt EL (2011) Helicase dissociation and annealing of RNA-DNA hybrids by Escherichia coli Cas3 protein. Biochem J 439(1):85-95.
-
(2011)
Biochem J
, vol.439
, Issue.1
, pp. 85-95
-
-
Howard, J.A.1
Delmas, S.2
Ivančić-Baće, I.3
Bolt, E.L.4
-
46
-
-
84921996108
-
Structures of CRISPR Cas3 offer mechanistic insights into Cascadeactivated DNA unwinding and degradation
-
Huo Y, et al. (2014) Structures of CRISPR Cas3 offer mechanistic insights into Cascadeactivated DNA unwinding and degradation. Nat Struct Mol Biol 21(9):771-777.
-
(2014)
Nat Struct Mol Biol
, vol.21
, Issue.9
, pp. 771-777
-
-
Huo, Y.1
-
47
-
-
0025085655
-
Ligation-independent cloning of PCR products (LIC-PCR)
-
Aslanidis C, de Jong PJ (1990) Ligation-independent cloning of PCR products (LIC-PCR). Nucleic Acids Res 18(20):6069-6074.
-
(1990)
Nucleic Acids Res
, vol.18
, Issue.20
, pp. 6069-6074
-
-
Aslanidis, C.1
De Jong, P.J.2
-
48
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z, Minor W (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 276:307-326.
-
(1997)
Methods Enzymol
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
50
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams PD, et al. (2010) PHENIX: A comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr 66(Pt 2):213-221.
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
-
51
-
-
0347383761
-
SOLVE and RESOLVE: Automated structure solution and density modification
-
Terwilliger TC (2003) SOLVE and RESOLVE: Automated structure solution and density modification. Methods Enzymol 374:22-37.
-
(2003)
Methods Enzymol
, vol.374
, pp. 22-37
-
-
Terwilliger, T.C.1
-
52
-
-
13244281317
-
Coot: Model-building tools for molecular graphics
-
Pt 1
-
Emsley P, Cowtan K (2004) Coot: Model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr 60(Pt 12 Pt 1):2126-2132.
-
(2004)
Acta Crystallogr D Biol Crystallogr
, vol.60
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
|