Improving the genome annotation of the acarbose producer Actinoplanes sp. SE50/110 by sequencing enriched 5'-ends of primary transcripts

Journal of Biotechnology

Volumn 190, Issue , 2014, Pages 85-95

  Schwientek, Patrick ^a   Neshat, Armin ^a   Kalinowski, Jörn ^a   Klein, Andreas ^b   Rückert, Christian ^a   Schneiker Bekel, Susanne ^a   Wendler, Sergej ^a   Stoye, Jens ^a   Puhler, Alfred ^a  

^a BIELEFELD UNIVERSITY   (Germany)

^b BAYER PHARMA AG   (Germany)

Author keywords

Acarbose production; Actinoplanes; Genome annotation improvement; Sequencing of 5' ends of primary transcripts; Transcriptomics

Indexed keywords

CODES (SYMBOLS); GENES; GENETIC ENGINEERING; PROTEINS; RNA;

ACARBOSE; ACTINOPLANES; GENOME ANNOTATION; SEQUENCING OF 5'-ENDS OF PRIMARY TRANSCRIPTS; TRANSCRIPTOMICS;

TRANSCRIPTION;

ACARBOSE; COMPLEMENTARY RNA; MESSENGER RNA; SIGNAL PEPTIDE; SPACER DNA; UNTRANSLATED RNA; CYANOCOBALAMIN; GLYCOSIDASE INHIBITOR; RIBONUCLEASE P; RNA BINDING PROTEIN; SELENOCYSTEINE; SMALL PROTEIN B;

5' UNTRANSLATED REGION; ACTINOBACTERIA; ACTINOPLANES; ARTICLE; COBRS GENE; GENE MAPPING; GENE SEQUENCE; GENETIC CODE; GENOME ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PROMOTER REGION; PROTEIN MOTIF; RNA GENE; RNPB GENE; SELC GENE; SSRA GENE; TRANSCRIPTION INITIATION SITE; BACTERIAL GENOME; CHEMISTRY; GENETICS; METABOLISM; MICROMONOSPORACEAE; MOLECULAR GENETICS; SEQUENCE ANALYSIS;

ACTINOPLANES; ACTINOPLANES SP.;

ACARBOSE; GENOME, BACTERIAL; GLYCOSIDE HYDROLASE INHIBITORS; MICROMONOSPORACEAE; MOLECULAR SEQUENCE ANNOTATION; RIBONUCLEASE P; RNA, MESSENGER; RNA-BINDING PROTEINS; SELENOCYSTEINE; SEQUENCE ANALYSIS, RNA; VITAMIN B 12;

EID: 84911419347     PISSN: 01681656     EISSN: 18734863     Source Type: Journal    
DOI: 10.1016/j.jbiotec.2014.03.013     Document Type: Article

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