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Volumn 39, Issue 12, 2011, Pages 5109-5118

Escherichia coli σ 70 senses sequence and conformation of the promoter spacer region

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE; SIGMA FACTOR; SIGMA FACTOR 70; UNCLASSIFIED DRUG;

EID: 79960237269     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkr080     Document Type: Article
Times cited : (50)

References (38)
  • 1
    • 0014663102 scopus 로고
    • Factor stimulating transcription by RNA polymerase
    • Burgess, R.R., Travers, A.A., Dunn, J.J. and Bautz, E.K. (1969) Factor stimulating transcription by RNA polymerase. Nature, 221, 43-46.
    • (1969) Nature , vol.221 , pp. 43-46
    • Burgess, R.R.1    Travers, A.A.2    Dunn, J.J.3    Bautz, E.K.4
  • 2
    • 0242692671 scopus 로고    scopus 로고
    • Multiple sigma subunits and the partitioning of bacterial transcription space
    • DOI 10.1146/annurev.micro.57.030502.090913
    • Gruber, T.M. and Gross, C.A. (2003) Multiple sigma subunits and the partitioning of bacterial transcription space. Annu. Rev. Microbiol., 57, 441-466. (Pubitemid 37392951)
    • (2003) Annual Review of Microbiology , vol.57 , pp. 441-466
    • Gruber, T.M.1    Gross, C.A.2
  • 3
    • 0037261948 scopus 로고    scopus 로고
    • The sigma70 family of sigma factors
    • Paget, M.S. and Helmann, J.D. (2003) The sigma70 family of sigma factors. Genome Biol., 4, 203.
    • (2003) Genome Biol. , vol.4 , pp. 203
    • Paget, M.S.1    Helmann, J.D.2
  • 5
    • 0030965301 scopus 로고    scopus 로고
    • 70 subunit is responsible for the recognition of the 'extended -10' motif at promoters
    • DOI 10.1093/emboj/16.13.4034
    • Barne, K.A., Bown, J.A., Busby, S.J. and Minchin, S.D. (1997) Region 2.5 of the Escherichia coli RNA polymerase sigma70 subunit is responsible for the recognition of the 'extended-10' motif at promoters. EMBO J., 16, 4034-4040. (Pubitemid 27281018)
    • (1997) EMBO Journal , vol.16 , Issue.13 , pp. 4034-4040
    • Barne, K.A.1    Bown, J.A.2    Busby, S.J.W.3    Minchin, S.D.4
  • 6
    • 0343597687 scopus 로고
    • Nucleotide sequence of an RNA polymerase binding site at an early T7 promoter
    • Pribnow, D. (1975) Nucleotide sequence of an RNA polymerase binding site at an early T7 promoter. Proc. Natl Acad. Sci. USA, 72, 784-788.
    • (1975) Proc. Natl Acad. Sci. USA , vol.72 , pp. 784-788
    • Pribnow, D.1
  • 7
    • 0016629024 scopus 로고
    • Bacteriophage T7 early promoters: Nucleotide sequences of two RNA polymerase binding sites
    • Pribnow, D. (1975) Bacteriophage T7 early promoters: nucleotide sequences of two RNA polymerase binding sites. J. Mol. Biol., 99, 419-443.
    • (1975) J. Mol. Biol. , vol.99 , pp. 419-443
    • Pribnow, D.1
  • 8
    • 0016821121 scopus 로고
    • Recognition sequences of repressor and polymerase in the operators of bacteriophage lambda
    • Maniatis, T., Ptashne, M., Backman, K., Kield, D., Flashman, S., Jeffrey, A. and Maurer, R. (1975) Recognition sequences of repressor and polymerase in the operators of bacteriophage lambda. Cell, 5, 109-113.
    • (1975) Cell , vol.5 , pp. 109-113
    • Maniatis, T.1    Ptashne, M.2    Backman, K.3    Kield, D.4    Flashman, S.5    Jeffrey, A.6    Maurer, R.7
  • 9
    • 0021111879 scopus 로고
    • Compilation and analysis of Escherichia coli promoter DNA sequences
    • Hawley, D.K. and McClure, W.R. (1983) Compilation and analysis of Escherichia coli promoter DNA sequences. Nucleic Acids Res., 11, 2237-2255.
    • (1983) Nucleic Acids Res. , vol.11 , pp. 2237-2255
    • Hawley, D.K.1    McClure, W.R.2
  • 10
    • 0141605202 scopus 로고    scopus 로고
    • Identification and analysis of 'extended -10' promoters in Escherichia coli
    • DOI 10.1093/nar/gkg694
    • Mitchell, J.E., Zheng, D., Busby, S.J. and Minchin, S.D. (2003) Identification and analysis of 'extended-10' promoters in Escherichia coli. Nucleic Acids Res., 31, 4689-4695. (Pubitemid 37441830)
    • (2003) Nucleic Acids Research , vol.31 , Issue.16 , pp. 4689-4695
    • Mitchell, J.E.1    Zheng, D.2    Busby, S.J.W.3    Minchin, S.D.4
  • 12
    • 0037123602 scopus 로고    scopus 로고
    • Structural basis of transcription initiation: An RNA polymerase holoenzyme-DNA complex
    • DOI 10.1126/science.1069595
    • Murakami, K.S., Masuda, S., Campbell, E.A., Muzzin, O. and Darst, S.A. (2002) Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex. Science, 17, 1285-1290. (Pubitemid 34522778)
    • (2002) Science , vol.296 , Issue.5571 , pp. 1285-1290
    • Murakami, K.S.1    Masuda, S.2    Campbell, E.A.3    Muzzin, O.4    Darst, S.A.5
  • 14
    • 0018867360 scopus 로고
    • E. coli RNA polymerase interacts homologously with two different promoters
    • Siebenlist, U., Simpson, R.B. and Gilbert, W. (1980) E. coli RNA polymerase interacts homologously with two different promoters. Cell, 20, 269-281. (Pubitemid 10117743)
    • (1980) Cell , vol.20 , Issue.2 , pp. 269-281
    • Siebenlist, U.1    Simpson, R.B.2    Gilbert, W.3
  • 16
    • 0018588890 scopus 로고
    • Regulatory sequences involved in the promotion and termination of RNA transcription
    • Rosenberg, M. and Court, D. (1979) Regulatory sequences involved in the promotion and termination of RNA transcription. Annu. Rev. Genet., 13, 319-353.
    • (1979) Annu. Rev. Genet. , vol.13 , pp. 319-353
    • Rosenberg, M.1    Court, D.2
  • 17
    • 0021911806 scopus 로고
    • Characterization in vitro of the effect of spacer length on the activity of Escherichia coli RNA polymerase at the TAC promoter
    • Mulligan, M.E., Brosius, J. and McClure, W.R. (1985) Characterization in vitro of the effect of spacer length on the activity of Escherichia coli RNA polymerase at the TAC promoter. J. Biol. Chem., 260, 3529-3538. (Pubitemid 15114353)
    • (1985) Journal of Biological Chemistry , vol.260 , Issue.6 , pp. 3529-3538
    • Mulligan, M.E.1    Brosius, J.2    McClure, W.R.3
  • 19
    • 58849125430 scopus 로고    scopus 로고
    • The promoter spacer influences transcription initiation via sigma70 region 1.1 of Escherichia coli RNA polymerase
    • Hook-Barnard, I.G. and Hinton, D.M. The promoter spacer influences transcription initiation via sigma70 region 1.1 of Escherichia coli RNA polymerase. Proc. Natl Acad. Sci. USA, 106, 737-742.
    • Proc. Natl Acad. Sci. USA , vol.106 , pp. 737-742
    • Hook-Barnard, I.G.1    Hinton, D.M.2
  • 20
    • 0025128277 scopus 로고
    • Different physiological roles of two independent pathways for nitrite reduction to ammonia by enteric bacteria
    • Page, L., Griffiths, L. and Cole, J.A. (1990) Different physiological roles of two independent pathways for nitrite reduction to ammonia by enteric bacteria. Arch. Microbiol., 154, 349-354. (Pubitemid 20292570)
    • (1990) Archives of Microbiology , vol.154 , Issue.4 , pp. 349-354
    • Page, L.1    Griffiths, L.2    Cole, J.A.3
  • 21
    • 0017129243 scopus 로고
    • Transposition and fusion of the lac genes to selected promoters in Escherichia coli using bacteriophage lambda and Mu
    • Casadaban, M.J. (1976) Transposition and fusion of the lac genes to selected promoters in Escherichia coli using bacteriophage lambda and Mu. J. Mol. Biol., 5, 541-555.
    • (1976) J. Mol. Biol. , vol.5 , pp. 541-555
    • Casadaban, M.J.1
  • 22
    • 0031576351 scopus 로고    scopus 로고
    • Role of DNA supercoiling and RpoS sigma factor in the osmotic and growth phase-dependent induction of the gene osmE of Escherichia coli K12
    • DOI 10.1006/jmbi.1997.1308
    • Conter, A., Menchon, C. and Gutierrez, C. (1997) Role of DNA supercoiling and rpoS sigma factor in the osmotic and growth phase-dependent induction of the gene osmE of Escherichia coli K12. J. Mol. Biol., 273, 75-83. (Pubitemid 27460215)
    • (1997) Journal of Molecular Biology , vol.273 , Issue.1 , pp. 75-83
    • Conter, A.1    Menchon, C.2    Gutierrez, C.3
  • 23
    • 0028986818 scopus 로고
    • Selectivity of the Escherichia coli RNA polymerase Esigma38 for overlapping promoters and ability to support CRP activation
    • Kolb, A., Kotlarz, D., Kusano, S. and Ishihama, A. (1995) Selectivity of the Escherichia coli RNA polymerase Esigma38 for overlapping promoters and ability to support CRP activation. Nucleic Acids Res., 23, 819-826.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 819-826
    • Kolb, A.1    Kotlarz, D.2    Kusano, S.3    Ishihama, A.4
  • 24
    • 0027120805 scopus 로고
    • Broad host range plasmids carrying the Escherichia coli lactose and galactose operons
    • Lodge, J., Fear, J., Busby, S., Gunasekaran, P. and Kamini, N.R. (1992) Broad host range plasmids carrying the Escherichia coli lactose and galactose operons. FEMS Microbiol. Lett., 74, 271-276.
    • (1992) FEMS Microbiol. Lett. , vol.74 , pp. 271-276
    • Lodge, J.1    Fear, J.2    Busby, S.3    Gunasekaran, P.4    Kamini, N.R.5
  • 25
    • 78651107124 scopus 로고    scopus 로고
    • Organisation of the LEE1 operon regulatory region of enterohaemorrhagic Escherichia coli O157:H7 and activation by GrlA
    • Islam, M.S., Bingle, L.E.H., Pallen, M.J. and Busby, S.J.W. (2011) Organisation of the LEE1 operon regulatory region of enterohaemorrhagic Escherichia coli O157:H7 and activation by GrlA. Mol. Microbiol., 79, 468-483.
    • (2011) Mol. Microbiol. , vol.79 , pp. 468-483
    • Islam, M.S.1    Bingle, L.E.H.2    Pallen, M.J.3    Busby, S.J.W.4
  • 26
    • 0034595498 scopus 로고    scopus 로고
    • Interactions between activating region 3 of the Escherichia coli cyclic AMP receptor protein and region 4 of the RNA polymerase sigma(70 subunit: Application of suppression genetics
    • Rhodius, V.A. and Busby, S.J. (2000) Interactions between activating region 3 of the Escherichia coli cyclic AMP receptor protein and region 4 of the RNA polymerase sigma(70) subunit: application of suppression genetics. J. Mol. Biol., 299, 311-324.
    • (2000) J. Mol. Biol. , vol.299 , pp. 311-324
    • Rhodius, V.A.1    Busby, S.J.2
  • 27
    • 1342342820 scopus 로고    scopus 로고
    • Transcription activation at the Escherichia coli melAB promoter: Interactions of MelR with the C-terminal domain of the RNA polymerase α subunit
    • DOI 10.1111/j.1365-2958.2003.03930.x
    • Grainger, D.C., Belyaeva, T.A., Lee, D.J., Hyde, E.I. and Busby, S.J. (2004) Transcription activation at the Escherichia coli melAB promoter: interactions of MelR with the C-terminal domain of the RNA polymerase alpha subunit. Mol. Microbiol., 51, 1311-1320. (Pubitemid 38338894)
    • (2004) Molecular Microbiology , vol.51 , Issue.5 , pp. 1311-1320
    • Grainger, D.C.1    Belyaeva, T.A.2    Lee, D.J.3    Hyde, E.I.4    Busby, S.J.W.5
  • 28
    • 0013649248 scopus 로고    scopus 로고
    • Introduction to protein: DNA interactions, DNase i footprinting, hydroxyl radical footprinting, permanganate footprinting and supplementary protocols
    • Docherty, K. (ed.) BIOS Scientific Publishers, Oxford
    • Savery, N., Belyaeva, T. and Busby, S. (1996) Introduction to protein: DNA interactions, DNase I footprinting, hydroxyl radical footprinting, permanganate footprinting and supplementary protocols. In Docherty, K. (ed.), Essential Techniques: Gene Transcription. BIOS Scientific Publishers, Oxford, pp. 1-33.
    • (1996) Essential Techniques: Gene Transcription , pp. 1-33
    • Savery, N.1    Belyaeva, T.2    Busby, S.3
  • 29
    • 0003785155 scopus 로고
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Miller, J. (1972) Experiments in Molecular Genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1972) Experiments in Molecular Genetics
    • Miller, J.1
  • 30
    • 0042121115 scopus 로고    scopus 로고
    • DNA analysis servers: Plot.it, bend.it, model.it and IS
    • DOI 10.1093/nar/gkg559
    • Vlahovicek, K., Kajan, L. and Pongor, S. (2003) DNA analysis servers: plot.it, bend.it, model.it and IS. Nucleic Acids Res., 31, 3686-3687. (Pubitemid 37442223)
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3686-3687
    • Vlahovicek, K.1    Kajan, L.2    Pongor, S.3
  • 31
    • 0028029260 scopus 로고
    • An analogue of the DnaJ molecular chaperone whose expression is controlled by sigma s during the stationary phase and phosphate starvation in Escherichia coli
    • Yamashino, T., Kakeda, M., Ueguchi, C. and Mizuno, T. (1994) An analogue of the DnaJ molecular chaperone whose expression is controlled by sigma s during the stationary phase and phosphate starvation in Escherichia coli. Mol. Microbiol., 13, 475-483.
    • (1994) Mol. Microbiol. , vol.13 , pp. 475-483
    • Yamashino, T.1    Kakeda, M.2    Ueguchi, C.3    Mizuno, T.4
  • 32
    • 33645088941 scopus 로고    scopus 로고
    • Role of the spacer between the-35 and-10 regions in sigmaS promoter selectivity in Escherichia coli
    • Typas, A. and Hengge, R. (2006) Role of the spacer between the-35 and-10 regions in sigmaS promoter selectivity in Escherichia coli. Mol. Microbiol., 59, 1037-1051.
    • (2006) Mol. Microbiol. , vol.59 , pp. 1037-1051
    • Typas, A.1    Hengge, R.2
  • 33
    • 0034161515 scopus 로고    scopus 로고
    • Escherichia coli promoter opening and -10 recognition: Mutational analysis of σ70
    • Fenton, M.S., Lee, S.J. and Gralla, J.D. (2000) Escherichia coli promoter opening and-10 recognition: mutational analysis of sigma70. EMBO J., 19, 1130-1137. (Pubitemid 30119837)
    • (2000) EMBO Journal , vol.19 , Issue.5 , pp. 1130-1137
    • Fenton, M.S.1    Lee, S.J.2    Gralla, J.D.3
  • 34
    • 0021275046 scopus 로고
    • The selection and characterisation of two novel mutations in the overlapping promoters of the Escherichia coli galactose operon
    • DOI 10.1016/0378-1119(84)90257-9
    • Busby, S., Truelle, N., Spassky, A., Dreyfus, M. and Buc, H. (1984) The selection and characterisation of two novel mutations in the overlapping promoters of the Escherichia coli galactose operon. Gene, 28, 201-209. (Pubitemid 14106419)
    • (1984) Gene , vol.28 , Issue.2 , pp. 201-209
    • Busby, S.1    Truelle, N.2    Spassky, A.3
  • 35
    • 7444263384 scopus 로고    scopus 로고
    • The strong efficiency of the Escherichia coli gapA P1 promoter depends on a complex combination of functional determinants
    • DOI 10.1042/BJ20040792
    • Thouvenot, B., Charpentier, B. and Branlant, C. (2004) The strong efficiency of the Escherichia coli gapA P1 promoter depends on a complex combination of functional determinants. Biochem. J., 383, 371-382. (Pubitemid 39446699)
    • (2004) Biochemical Journal , vol.383 , Issue.2 , pp. 371-382
    • Thouvenot, B.1    Charpentier, B.2    Branlant, C.3
  • 36
    • 0024383750 scopus 로고
    • Saturation mutagenesis of an Escherichia coli rRNA promoter and initial characterization of promoter variants
    • Gaal, T., Barkei, J., Dickson, R.R., deBoer, H.A., deHaseth, P.L., Alavi, H. and Gourse, R.L. (1989) Saturation mutagenesis of an Escherichia coli rRNA promoter and initial characterization of promoter variants. J. Bacteriol., 171, 4852-4861. (Pubitemid 19209070)
    • (1989) Journal of Bacteriology , vol.171 , Issue.9 , pp. 4852-4861
    • Gaal, T.1    Barkei, J.2    Dickson, R.R.3    DeBoer, H.A.4    DeHaseth, P.L.5    Alavi, H.6    Gourse, R.L.7
  • 37
    • 0033565797 scopus 로고    scopus 로고
    • Positioning of σ(S), the stationary phase σ factor, in Escherichia coli RNA polymerase-promoter open complexes
    • DOI 10.1093/emboj/18.14.4049
    • Colland, F., Fujita, N., Kotlarz, D., Bown, J.A., Meares, C.F., Ishihama, A. and Kolb, A. (1999) Positioning of sigma(S), the stationary phase sigma factor, in Escherichia coli RNA polymerase-promoter open complexes. EMBO J., 18, 4049-4059. (Pubitemid 29335857)
    • (1999) EMBO Journal , vol.18 , Issue.14 , pp. 4049-4059
    • Colland, F.1    Fujita, N.2    Kotlarz, D.3    Bown, J.A.4    Meares, C.F.5    Ishihama, A.6    Kolb, A.7
  • 38
    • 0026734674 scopus 로고
    • DNA deformation in nucleoprotein complexes between RNA polymerase, cAMP receptor protein and the lac UV5 promoter probed by singlet oxygen
    • Buckle, M., Buc, H. and Travers, A. (1992) DNA deformation in nucleoprotein complexes between RNA polymerase, cAMP receptor protein and the lac UV5 promoter probed by singlet oxygen. EMBO J., 11, 2619-2652.
    • (1992) EMBO J. , vol.11 , pp. 2619-2652
    • Buckle, M.1    Buc, H.2    Travers, A.3


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