Polycyclic aromatic hydrocarbons (PAHs) biodegradation potential and diversity of microbial consortia enriched from tsunami sediments in Miyagi, Japan

Journal of Hazardous Materials

Volumn 283, Issue , 2015, Pages 689-697

  Bacosa, Hernando Pactao ^a,b   Inoue, Chihiro ^a  

^a TOHOKU UNIVERSITY   (Japan)

^b UNIVERSITY OF TEXAS AT AUSTIN   (United States)

Author keywords

Biodegradation; Dokdonella; Microbial consortia; Polycyclic aromatic hydrocarbon; Tsunami

Indexed keywords

POLYCYCLIC AROMATIC HYDROCARBONS; TSUNAMIS;

BIODEGRADATION POTENTIALS; DOKDONELLA; MICROBIAL CONSORTIA; POLYCYCLIC AROMATIC HYDROCARBONS (PAHS); TSUNAMI SEDIMENTS;

BIODEGRADATION;

BACTERIAL PROTEIN; CARBON; DIOXYGENASE; FLUORENE; NIDA PROTEIN; PHENANTHRENE; POLYCYCLIC AROMATIC HYDROCARBON; PYRENE; UNCLASSIFIED DRUG; BACTERIAL DNA; FLUORENE DERIVATIVE; PHENANTHRENE DERIVATIVE; PYRENE DERIVATIVE; RNA 16S; SOIL POLLUTANT;

BACTERIUM; BIODEGRADATION; BIOREMEDIATION; MICROBIAL COMMUNITY; PAH; SOIL POLLUTION; SOIL REMEDIATION; SPECIES DIVERSITY; TSUNAMI;

ARTICLE; BACTERIUM CULTURE; BIODEGRADATION; BIOREMEDIATION; CONTROLLED STUDY; DENATURING GRADIENT GEL ELECTROPHORESIS; DISASTER; EARTHQUAKE; ENERGY RESOURCE; JAPAN; MICROBIAL COMMUNITY; MICROBIAL CONSORTIUM; MICROBIAL DIVERSITY; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PSEUDOMONAS; SEDIMENT; SPHINGOBACTERIUM; SPHINGOMONAS; TSUNAMI; CHEMISTRY; CLASSIFICATION; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; PROTEOBACTERIA; SOIL POLLUTANT;

HONSHU; JAPAN; MIYAGI; TOHOKU;

DOKDONELLA;

BIODEGRADATION, ENVIRONMENTAL; DENATURING GRADIENT GEL ELECTROPHORESIS; DNA, BACTERIAL; FLUORENES; GEOLOGIC SEDIMENTS; JAPAN; MICROBIAL CONSORTIA; PHENANTHRENES; POLYCYCLIC HYDROCARBONS, AROMATIC; POLYMERASE CHAIN REACTION; PROTEOBACTERIA; PYRENES; RNA, RIBOSOMAL, 16S; SOIL POLLUTANTS; TSUNAMIS;

EID: 84910065967     PISSN: 03043894     EISSN: 18733336     Source Type: Journal    
DOI: 10.1016/j.jhazmat.2014.09.068     Document Type: Article

References (57)

1. Mori N., Takahashi T., Yasuda T., Yanagisawa H. Survey of 2011 Tohoku earthquake tsunami inundation and run-up. Geophys. Res. Lett. 2011, 38:L00G14. 10.1029/2011GL049210.
2. Okada N., Ye T., Kajitani Y., Shi P., Tatano H. The 2011 eastern Japan great earthquake disaster: overview and comments. Int. J. Disaster Risk Sci. 2011, 2:34-42.
3. Bird W.A., Grossman E. Chemical aftermath: contamination and cleanup following the Tohoku earthquake and tsunami. Environ. Health Perspect. 2011, 119:a290-a301.
4. Harvey R.G. Polycyclic Aromatic Hydrocarbons 1997, Wiley-VCH, New York.
5. Miles C.J., Delfino J.J. Priority pollutant polycyclic aromatic hydrocarbons in Florida sediments. Bull. Environ. Contam. Toxicol. 1999, 63:226-234.
6. U.S.Department of Health and Human Services Report on Carcinogens 2005, Public Health Service, Atlanta, GA. 11th ed.
7. Juhasz A.L., Naidu R. Bioremediation of high molecular weight polycyclic aromatic hydrocarbons: a review of the microbial degradation of benzo[a]pyrene. Int. Biodeterior. Biodegrad. 2000, 45:57-88.
8. Hilyard E.J., Jones-Meehan J.M., Spargo B.J., Hill R.T. Enrichment, isolation, and phylogenetic identification of polycyclic aromatic hydrocarbon-degrading bacteria from Elizabeth river sediments. Appl. Environ. Microbiol. 2008, 74:1176-1182.
9. Debruyn J.M., Sayler G.S. Microbial community structure and biodegradation activity of particle-associated bacteria in a coal tar contaminated creek. Environ. Sci. Technol. 2009, 43:3047-3053.
10. Debruyn J.M., Mead T.J., Wilhelm S.W. PAH biodegradative genotypes in Lake Erie sediments: evidence for broad geographical distribution of pyrene-degrading Mycobacteria. Environ. Sci. Technol. 2009, 43:3467-3473.
11. Chung W.K., King G.M. Isolation, characterization, and polyaromatic hydrocarbon degradation potential of aerobic bacteria from marine macrofaunal burrow sediments and description of Lutibacterium anuloederans gen. nov., sp nov., and Cycloclasticus spirillensus sp. nov. Appl. Environ. Microbiol. 2001, 67:5585-5592.
12. Zhou H.W., Wong A.H.Y., Yu R.M.K., Park Y.D., Wong Y.S., Tam N.F.Y. Polycyclic aromatic hydrocarbon-induced structural shift of bacterial communities in mangrove sediment. Microb. Ecol. 2009, 58:153-160.
13. Szczuciński W., Niedzielski P., Rachlewicz G., Sobczynski T., Ziolla A., Kowalski A., Lorenc S., Siepak J. Contamination of tsunami deposits in a coastal zone inundated by the 26 December 2004 tsunami in Thailand. Environ. Geol. 2005, 49:321-331.
14. Tsuchiya N., Inoue C., Yamada R., Yamasaki S., Hirano N., Okamoto A., Ogawa Y., et al. Risk assessments of Arsenic in tsunami sediments from Iwate, Miyagi and Fukushima Prefecture, Northeast Japan by the 2011 off the Pacific coast of Tohoku Earthquake. J. Geol. Soc. Jpn. 2012, 118:419-430.
15. Dahanayake K., Kulasena N. Recognition of diagnostic criteria for recent- and paleo-tsunami sediments from Sri Lanka. Mar. Geol. 2008, 254:180-186.
16. Goto K., Chagué-Goff C., Fujino S., Goff J., Jaffe B., Nishimura Y., Richmond B., Sugawara D., Szczuciński W., Tappin D.R., Witter R., Yulianto E. New insights into tsunami risk from the 2011 Tohoku-oki event. Mar. Geol. 2011, 290:46-50.
17. Fujiwara O., Masuda F., Sakai T., Irizuki T., Fuse K. Tsunami deposits in Holocene bay mud in southern Kanto region, Pacific Coast of central Japan. Sediment. Geol. 2000, 135:219-230.
18. Boldrin B., Tiehm A., Fritzsche C. Degradation of phenanthrene, fluorene, fluoranthene, and pyrene by a Mycobacterium sp. Appl. Environ. Microbiol. 1993, 59:1927-1930.
19. Yu S.H., Ke L., Wong Y.S., Tam N.F.Y. Degradation of polycyclic aromatic (PAHs) by a bacterial consortium enriched from mangrove sediments. Environ. Int. 2005, 32:149-154.
20. Zhou H.W., Luan T.G., Zou F., Tam N.F.Y. Different bacterial groups for biodegradation of three- and four-ring PAHs isolated from a Hong Kong mangrove sediment. J. Hazard Mater. 2008, 152:1179-1185.
21. Bacosa H., Suto K., Inoue C. Preferential degradation of aromatic hydrocarbons in kerosene by a microbial consortium. Int. Biodeterior. Biodegrad. 2010, 64:702-710.
22. Bacosa H.P., Suto K., Inoue C. Degradation potential and microbial community structure of heavy oil-enriched microbial consortia from mangrove sediments in Okinawa, Japan. J. Environ. Sci. Health A 2013, 48:1-12.
23. Hammer Ø., Harper D.A.T., Ryan P.D. PAST: paleontological statistics software package for education and data analysis. Palaeontol. Electron. 2001, 4(1):9. http://palaeo-electronica.org/2001_1/past/issue1_01.htm.
24. Ding G.C., Heber H., Sulked S., Spit Eller M., Prank G.J., Hoister K., Kögel-Knabner I., Small K. Soil type-dependent responses to phenanthrene as revealed by determining the diversity and abundance of polycyclic aromatic hydrocarbon ring-hydroxylating dioxygenase genes by using a novel PCR detection system. Appl. Environ. Microbiol. 2010, 76:4765-4771.
25. DeBruyn J.M., Chewing C.S., Sayler G.S. Comparative quantitative prevalence of mycobacterium and functionally abundant nidA, nana, and magic deoxygenise genes in coal tar contaminated sediments. Environ. Sci. Technol. 2007, 41:5426-5432.
26. Bacosa H.P., Suto K., Inoue C. Bacterial community dynamics during the preferential degradation of aromatic hydrocarbons by a microbial consortium. Int. Biodeterior. Biodegrad. 2012, 74:109-115.
27. Jacques R.J.S., Koneke B.C., Bento F.M., Tierra A.S., Per alba M.C.R., Cameron F.A.O. Microbial consortium bioaugmentation of a polycyclic aromatic hydrocarbons contaminated soil. Bioresour. Technol. 2008, 99:2637-2643.
28. Muckian L.M., Grant R.J., Clipson N.J.W., Doyle E.M. Bacterial community dynamics during bioremediation of phenanthrene- and fluoranthene-amended soil. Int. Biodeterior. Biodegrad. 2009, 63:52-56.
29. Wang X., Wang F., Wang T., Bain Y., Yang X., Kiang X. PAHs biodegradation potential of indigenous consortia from agricultural soil and contaminated soil in two-liquid-phase bioreactor (TLPB). J. Hazard Mater. 2010, 176:41-47.
30. Prabagaran S.R., Panorama R., Deville D., Shiva S. Predominance of Roseobacter, Sulfitobacter, Glaciecola and Psychrobacter in seawater collected off Ushuaia, Argentina, Sub-Antarctica. FEMS Microbiol. Ecol. 2007, 59:342-355.
31. Desai A., Austenite R., Dimitrou-Christidis P., McDonald T. Biodegradation kinetics of select polycyclic aromatic hydrocarbon (PAH) mixtures by Sphingomonas paucimobilis EPA505. Biodegradation 2008, 19:223-233.
32. Lotfabad S.K., Gary M.R. Kinetics of biodegradation of mixtures of polycyclic aromatic hydrocarbons. Appl. Microbiol. Biotechnol. 2002, 60:361-366.
33. Stringfellow W., Aitken M. Competitive metabolism of naphthalene, methylnapthalenes, and fluorene by phenanthrene-degrading pseudomonads. Appl. Environ. Microbiol. 1995, 61:357-362.
34. Tipmanee D., Delavan W., Pongpiachan S., Schwarz K., Sompongchaiyakul P. Using polycyclic aromatic hydrocarbons (PAHS) as a chemical proxy to indicate tsunami 2004 backwash in Khao Lak coastal area, Thailand. Nat. Hazards Earth Syst. Sci. 2012, 12:1441-1451.
35. Johnsen A.R., Karlson U. PAH degradation capacity of soil microbial communities - does it depend on PAH exposure?. Microb. Ecol. 2005, 50:488-495.
36. Aitken M.D., Stringfellow W.T., Nagel R.D., Casing C., Chen S.H. Characteristics of phenanthrene-degrading bacteria isolated from soils contaminated with polycyclic aromatic hydrocarbons. Can. J. Microbiol. 1998, 44:743-752.
37. Cunha S., Taiga I., Piers A., ad Costa M.S., Version A. Dokdonella fugitiva sp. nov., a gammaproteobacterium isolated from potting soil. Syst. Appl. Microbiol. 2006, 29:191-196.
38. Ten L.N., Jung H.M., Imp W.T., Oh H.W., Yang D.C., Yoo S.A., Lee S.T. Dokdonella ginsengisoli sp nov., isolated from soil from a ginseng field, and emended description of the genus Dokdonella. Int. J. Syst. Evol. Microbial. 2009, 59:1947-1952.
39. Yoon J.H., Kang S.J., Oh T.K. Dokdonella koreensis gen. nov., sp nov., isolated from soil. Int. J. Syst. Evol. Microbiol. 2006, 56:145-150.
40. Alonzo-Gutierrez J., Figures A., Labiates J., Jimenez N., Vinas M., Solana's A.M., Nova B. Bacterial communities from shoreline environments (Costa ad Mortem, North-western Spain) affected by the Prestige oil spill. Appl. Environ. Microbiol. 2009, 75:3407-3418.
41. Sipila T.P., Cosine A.K., Åkerman M.L., Fortifies C., Haustella K., Raja K. High aromatic ring-cleavage diversity in birch rhizosphere: PAH treatment-specific changes of IE3 group extradiol dioxygenases and 16S rRNA bacterial communities in soil. ISME J. 2008, 2:968-981.
42. Qiliang L., Loping W., Yahoo L., Yuan J., Sun F., Shako Z. Parvibaculum indicum sp. nov., isolated from deep-sea water. Int. J. Syst. Evol. Microbiol. 2011, 61:271-274.
43. Wang B.J., Lai Q.L., Cui Z.S., Tan T.F., Shako Z.Z. A pyrene-degrading consortium from deep-sea sediment of the West Pacific and its key member Cycloclasticus sp P1. Environ. Microbiol. 2008, 10:1948-1963.
44. Lafortune I., Juneau P., Defile E., Lupine F., Baudette R., Valour R. Bacterial diversity of a consortium degrading high-molecular-weight polycyclic aromatic hydrocarbons in a two-liquid phase biosystem. Microb. Ecol. 2009, 57:455-468.
45. Notomista E., Pinocchio F., Carfare V., Malone G., Rizzo V., Trombone L., Varcamonti M., Di Donator A. The marine isolate Novosphingobium sp. PP1Y shows specific adaptation to use the aromatic fraction of fuels as the sole carbon and energy source. Microb. Ecol. 2011, 61:582-594.
46. Singleton D.R., Richardson S.D., Aitken M.D. Pyrosequence analysis of bacterial communities in aerobic bioreactors treating polycyclic aromatic hydrocarbon-contaminated soil. Biodegradation 2011, 22:1061-1073.
47. Yutthammo C., Thongthammachat N., Pinphanichakarn P., Luepromchai E. Diversity and activity of PAH-degrading bacteria in the phyllosphere of ornamental plants. Microb. Ecol. 2010, 59:357-368.
48. Coppotelli B.M., Ibarrolaza A., Dias R.L., Del Panno M.T., Berthe-Corti L., Morelli I.S. Study of the degradation activity and the strategies to promote the bioavailability of phenanthrene by Sphingomonas paucimobilis strain 20006FA. Microb. Ecol. 2010, 59:266-276.
49. Vinas M., Sabate J., Espuny M.J., Solana's A.M. Bacterial community dynamics and polycyclic aromatic hydrocarbon degradation during bioremediation of heavily creosote-contaminated soil. Appl. Environ. Microbiol. 2005, 71:7008-7018.
50. Asano R., Nakai Y., Kawada W., Shimura Y., Inamoto T., Fukushima J. Seawater inundation from the 2011 Tohoku tsunami continues to strongly affect soil bacterial communities 1 year later. Microb. Ecol. 2013, 66:639-646.
51. Janbandhu A., Fulekar M.H. Biodegradation of phenanthrene using adapted, microbial consortium isolated from petrochemical contaminated environment. J. Hazard Mater. 2011, 187:333-340.
52. Guo C.L., Zhou H.W., Wong Y.S., Tam N.F.Y. Isolation of PAH-degrading bacteria from mangrove sediments and their biodegradation potential. Mar. Pollut. Bull. 2005, 51:8-12.
53. Zhang H.M., Kallimanis A., Koukkou A.I., Drainas C. Isolation and characterization of novel bacteria degrading polycyclic aromatic hydrocarbons from polluted Greek soils. Appl. Microbiol. Biotechnol. 2004, 65:124-131.
54. Kanaly R.A., Harayama S., Watanabe K. Rhodanobacter sp. strain BPC1 in a benzo[a]pyrene-mineralizing bacterial consortium. Appl. Environ. Microbiol. 2002, 68:5826-5833.
55. Li Y.H., Zhu J.N., Zhai Z.H., Zhang Q. Endophytic bacterial diversity in roots of Phragmites australis in constructed Beijing Cuihu Wetland (China). FEMS Microbiol. Lett. 2010, 309:84-93.
56. Xie C.H., Yokota A. Pleomorphomonas oryzae gen. nov., sp nov., a nitrogen-fixing bacterium isolated from paddy soil of Oryza sativa. Int. J. Syst. Evol. Microbiol. 2005, 55:1233-1237.
57. Yoo S.-H., Weon H.-Y., Anandham R., Kim B.-Y., Hong S.-B., Jeon Y.-A., Koo B.-S., Kwon S.-W. Dokdonella soli sp. nov., a gammaproteobacterium isolated from soil. Int. J. Syst. Evol. Microbiol. 2009, 59:1965-1968.