Bacterial community dynamics during the preferential degradation of aromatic hydrocarbons by a microbial consortium

International Biodeterioration and Biodegradation

Volumn 74, Issue , 2012, Pages 109-115

  Bacosa, Hernando Pactao ^a   Suto, Koichi ^a   Inoue, Chihiro ^a  

^a TOHOKU UNIVERSITY   (Japan)

Author keywords

Aromatic hydrocarbon; Biodegradation; Burkholderia spp.; Kerosene; Microbial consortium; Real time PCR

Indexed keywords

ALCALIGENES; ALIPHATIC COMPOUND; BACTERIAL COMMUNITY; BACTERIAL SPECIES; BURKHOLDERIA; HYDROCARBON DEGRADATION; HYDROCARBON FRACTION; HYDROCARBON MIXTURE; METABOLIC PRODUCTS; MICROBIAL CONSORTIA; MICROBIAL SPECIES; P-XYLENE; POPULATION CHANGE; QUANTITATIVE REAL-TIME POLYMERASE CHAIN REACTION; RAPID DEGRADATION; REAL-TIME PCR;

AROMATIC HYDROCARBONS; BACTERIA; BIODEGRADATION; BIOREMEDIATION; DEGRADATION; ORGANIC COMPOUNDS; PARAFFINS; POLYMERASE CHAIN REACTION; XYLENE;

KEROSENE;

AROMATIC HYDROCARBON; BACTERIOLOGY; BACTERIUM; BIODEGRADATION; COMMUNITY DYNAMICS; FRACTIONATION; POLLUTION EFFECT; POLYMERASE CHAIN REACTION; POPULATION STRUCTURE;

ACHROMOBACTER; ALCALIGENES; BACTERIA (MICROORGANISMS); BURKHOLDERIA; CUPRIAVIDUS; RHODANOBACTER;

EID: 84865289997     PISSN: 09648305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ibiod.2012.04.022     Document Type: Article

References (31)

1. Alexander M. Biodegradation of chemical of environmental concern. Science 1981, 2111:132-138.
2. Alisi C., Musella R., Tasso F., Ubaldi C., Manzo S., Cremisini C., Sprocati A.R. Bioremediation of diesel oil in a co-contaminated soil by bioaugmentation with a microbial formula tailored with native strains selected for heavy metals resistance. Science of the Total Environment 2009, 407:3024-3032.
3. Atlas D.M. Microbial degradation of petroleum hydrocarbons: an environmental perspective. Microbiological Reviews 1981, 45:180-209.
4. Bacosa H., Suto K., Inoue C. Preferential degradation of aromatic hydrocarbons in kerosene by a microbial consortium. International Biodeterioration and Biodegradation 2010, 64:702-710.
5. Bacosa H., Suto K., Inoue C. Preferential utilization of petroleum oil hydrocarbon components by microbial consortia reflects degradation pattern in aliphatic-aromatic hydrocarbon binary mixtures. World Journal of Microbiology and Biotechnology 2011, 27:1109-1117.
6. Baek K.H., Yoon B.D., Cho D.H., Kim B.H., Oh H.M., Kim H.S. Monitoring bacterial population dynamics using real-time PCR during the bioremediation of crude-oil-contaminated soil. Journal of Microbiology and Biotechnology 2009, 19:339-345.
7. Busse H., El-Banna T., Oyaizu H., Auling G. Identification of xenobiotic-degrading isolates from the beta subclass of the Proteobacteria by a polyphasic approach including 16s rRNA partial sequencing. International Journal of Systematic and Evolutionary Microbiology 1992, 42:19-26.
8. Cappello S., Caruso G., Zampino D., Monticelli L.S., Maimone G., Denaro R., Tripodo B., Trousselier M., Yakimov M., Giuliano L. Microbial community dynamics during assays of harbour oil spill bioremediation: a microscale simulation study. Journal of Applied Microbiology 2007, 102:184-194.
9. Chain P.S., Denef V.J., Konstantinidis K.T., Vergez L.M., Agulló L., Reyes V.L., Hauser L., Córdova M., Gómez L., González M., Land M., Lao V., Larimer F., LiPuma J.J., Mahenthiralingam E., Malfatti S.A., Marx C.J., Parnell J.J., Ramette A., Richardson P., Seeger M., Smith D., Spilker T., Sul W.J., Tsoi T.V., Ulrich L.E., Zhulin I.B., Tiedje J.M. Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73 Mbp genome shaped for versatility. Proceedings of the National Academy of Science of the United States of America 2006, 103:15280-15287.
10. Cunliffe M., Kertesz M.A. Effect of Sphingobium yanoikuyae B1 inoculation on bacterial community dynamics and polycyclic aromatic hydrocarbon degradation in aged and freshly PAH-contaminated soils. Environmental Pollution 2006, 144:228-237.
11. Frenzel M., Scarlett A., Rowland S.J., Galloway T.S., Burton S.K., Lappin-Scott H.M., Booth A.M. Complications with remediation strategies involving the biodegradation and detoxification of recalcitrant contaminant aromatic hydrocarbons. Science of the Total Environment 2010, 408:4093-4101.
12. Genovese M., Denaro R., Cappello S., Di Marco G., La Spada G., Giuliano L., Genovese L., Yakimov M.M. Bioremediation of benzene, toluene, ethylbenzene, xylenes-contaminated soil: a biopile pilot experiment. Journal of Applied Microbiology 2008, 105:1694-1702.
13. Goris J., De Vos P., Caballero-Mellado J., Park J., Falsen E., Quensen J.F., Tiedje J.M., Vandamme P. Classification of the biphenyl- and polychlorinated biphenyl-degrading strain LB400(T) and relatives as Burkholderia xenovorans sp nov. International Journal of Systematic and Evolutionary Microbiology 2004, 54:1677-1681.
14. Hosokawa R., Nagai M., Morikawa M., Okuyama H. Authochthonous bioaugmentation and its possible application to oil spills. World Journal of Microbiology and Biotechnology 2009, 25:1519-1528.
15. Iwamoto T., Nasu M. Current bioremediation practice and perspective. Journal of Bioscience and Bioengineering 2001, 92:1-8.
16. Jahnke M., El-Banna T., Klintworth R., Auling G. Mineralization of orthanilic acid is a plasmid associated trait in Alcaligenes sp. O-1. Journal of General Microbiology 1990, 136:2241-2249.
17. Khan F.I., Husain T. Risk-based monitored natural attenuation- a case study. Journal of Hazardous Materials 2001, 85:243-272.
18. Leahy J.G., Colwell R.R. Microbial degradation of hydrocarbons in the environment. Microbiological Reviews 1990, 54:305-315.
19. Lessie T.G., Hendrickson W., Manning B.D., Devereux R. Genomic complexity and plasticity of Burkholderia cepacia. FEMS Microbiology Letters 1996, 144:117-128.
20. Liu P.W.G., Chang T.C., Whang L.M., Kao C.H., Pan P.T., Cheng S.S. Bioremediation of petroleum hydrocarbon contaminated soil: effects of strategies and microbial community shift. International Biodeterioration and Biodegradation 2011, 65:1119-1127.
21. Mazzeo D.E.C., Levy C.E., De Angelis D.D.F., Marin-Morales M.A. BTEX biodegradation by bacteria from effluents of petroleum refinery. Science of the Total Environment 2010, 408:4334-4340.
22. Okoh A.I. Biodegradation alternative in the cleanup of petroleum hydrocarbon pollutants. Biotechnology and Molecular Biology Review 2006, 1:38-50.
23. Park W., Jeon C.O., Cadillo H., DeRito C., Madsen E.L. Survival of naphthalene-degrading Pseudomonas putida NCIB 9816-4 in naphthalene-amended soils: toxicity of naphthalene and its metabolites. Applied Microbiology and Biotechnology 2004, 64:429-435.
24. Pereyra L.P., Hiibel S.R., Requelme M.V.P., Reardon K.F., Pruden A. Detection and quantification of functional genes of cellulose-degrading, fermentative, and sulfate-reducing bacteria, and methanogenic archaea. Applied and Environmental Microbiology 2010, 76:2192-2202.
25. Pumphrey G.M., Madsen E.L. Naphthalene metabolism and growth inhibition by naphthalene in Polaromonas naphthalenivorans strain CJ2. Microbiology-SGM 2007, 153:3730-3738.
26. Tahhan R.A., Ammari T.G., Goussous S.J., Al-Shdaifat H.I. Enhancing the biodegradation of total petroleum hydrocarbons in oily sludge by a modified bioaugmentation strategy. International Biodeterioration and Biodegradation 2011, 65:130-134.
27. Vila J., Nieto J.M., Mertens J., Springael D., Grifoll M. Microbial community structure of a heavy fuel oil-degrading marine consortium: linking microbial dynamics with polycyclic aromatic hydrocarbon utilization. FEMS Microbiology Ecology 2010, 73:249-362.
28. Vogel T.M. Bioaugmentation as a soil bioremediation approach. Current Opinion in Biotechnology 1996, 7:311-316.
29. Yergeau E., Arbour M., Brousseau R., Juck D., Lawrence J., Masson L., Whyte L., Greer C. Microarray and real-time PCR analyses of the responses of high-arctic soil bacteria to hydrocarbon pollution and bioremediation treatments. Applied and Environmental Microbiology 2009, 75:6258-6267.
30. Yu S., Li S., Tang Y., Wu X. Succession of bacterial community along with the removal of heavy crude oil pollutants by multiple biostimulation treatments in the Yellow River Delata, China. Journal of Environmental Sciences 2011, 23:1533-1543.
31. Zhao D., Liu C., Liu L., Zhang Y., Liu Q., Wu W.M. Selection of functional consortium for crude oil-contaminated soil remediation. International Biodeterioration and Biodegradation 2011, 65:1244-1248.