Bacterial community dynamics during bioremediation of phenanthrene- and fluoranthene-amended soil

International Biodeterioration and Biodegradation

Volumn 63, Issue 1, 2009, Pages 52-56

  Muckian, Lorraine M ^a   Grant, Russell J ^a   Clipson, Nicholas J W ^a   Doyle, Evelyn M ^a  

^a UNIVERSITY COLLEGE DUBLIN   (Ireland)

Author keywords

Aeration; Bacterial community structure; Fertiliser; Polycyclic aromatic hydrocarbon (PAH); Terminal restriction fragment length polymorphism (TRFLP)

Indexed keywords

ANTHRACENE; AROMATIC COMPOUNDS; BACTERIOLOGY; BIOREMEDIATION; DYNAMICS; FERTILIZERS; FOSSIL FUELS; HYDROCARBONS; LEAKAGE (FLUID); MULTIVARIANT ANALYSIS; ORGANIC COMPOUNDS; POLYCYCLIC AROMATIC HYDROCARBONS; POLYMORPHISM; PORT TERMINALS; SOIL POLLUTION; SOILS; TERNARY SYSTEMS;

AERATION; AMENDED SOILS; BACTERIAL COMMUNITIES; BACTERIAL COMMUNITY STRUCTURE; COMMUNITY COMPOSITIONS; CONTAMINATED SOILS; ENVIRONMENTAL CONTAMINANTS; EXPERIMENTAL CONDITIONS; FERTILISER; FLUORANTHENE; HIGH CONCENTRATIONS; INCOMPLETE COMBUSTIONS; MICROBIAL POPULATIONS; MULTIVARIATE STATISTICAL ANALYSIS; ON TIMES; POSITIVE EFFECTS; RIBOTYPES; TERMINAL RESTRICTION FRAGMENT LENGTH POLYMORPHISM (TRFLP);

AROMATIC HYDROCARBONS;

AERATION; BACTERIUM; BIOREMEDIATION; COMMUNITY COMPOSITION; COMMUNITY DYNAMICS; COMMUNITY STRUCTURE; FLUORANTHENE; PAH; PHENANTHRENE; SOIL AMENDMENT; SOIL POLLUTION;

BACTERIA (MICROORGANISMS);

EID: 58149236705     PISSN: 09648305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ibiod.2008.04.005     Document Type: Article

References (33)

1. Alexander M. Biodegradation and Bioremediation. second ed. (1999), Academic Press, San Diego, CA
2. Atlas R.M. Microbial degradation of petroleum hydrocarbons: an environmental perspective. Microbiological Reviews 45 (1981) 180-209
3. Bamforth S.M., and Singleton I. Bioremediation of polycyclic aromatic hydrocarbons: current knowledge and future directions. Journal of Chemical Technology and Biotechnology 80 (2005) 723-726
4. Bowlen G.F., and Kosson D.S. In situ processes for bioremediation of BTEX and petroleum fuel products. In: Young L.Y., and Cerniglia C.F. (Eds). Microbial Transformation and Degradation of Toxic Organic Chemicals (1995), Wiley, New York 515-544
5. Breedveld G.D., and Sparrevik M. Nutrient-limited biodegradation of PAHs in various soil strata at a creosote contaminated site. Biodegradation 11 (2000) 391-399
6. Carriere P.P.E., and Mesania F.A. Enhanced biodegradation of creosote-contaminated soil. Waste Management 15 (1995) 579-583
7. Cerniglia C.E. Biodegradation of polycyclic aromatic hydrocarbons. Biodegradation 3 (1992) 351-368
8. Cerniglia C.E. Biodegradation of polycyclic aromatic hydrocarbons. Current Opinion in Biotechnology 4 (1993) 331-338
9. Clement B.G., Kehl L.E., DeBord K.L., and Kitts C.L. Terminal restriction fragment patterns (TRFPs), a rapid, PCR-based method for the comparison of complex bacterial communities. Journal of Microbiological Methods 31 (1998) 135-142
10. Griffiths R.I., Whiteley A.S., O'Donnell A.G., and Bailey M.J. Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition. Applied and Environmental Microbiology 66 (2000) 5488-5491
11. Guerin W.F., and Boyd S.A. Differential bioavailability of soil-sorbed naphthalene to two bacterial species. Applied and Environmental Microbiology 58 (1992) 1142-1152
12. Hansen L.D., Nestler C., Ringelberg D., and Bajpai R. Extended bioremediation of PAH/PCP contaminated soils from the POPILE wood treatment facility. Chemosphere 54 (2004) 1481-1493
13. Hatzinger P.B., and Alexander M. Effect of aging on chemicals in soil on their biodegradability and extractability. Environmental Science & Technology 29 (2005) 537-545
14. Johnsen A.R., Wick L.Y., and Harms H. Principles of microbial PAH-degradation in soil. Environmental Pollution 133 (2005) 71-84
15. Kaplan C.W., and Kitts C.L. Bacterial succession in a petroleum land treatment unit. Applied and Environmental Microbiology 70 (2004) 1777-1786
16. Kennedy N., Edwards S., and Clipson N. Impact of lime, nitrogen and plant species on bacterial community structure in grassland microcosms. Environmental Microbiology 6 (2004) 1070-1080
17. Kennedy N., Edwards S., and Clipson N. Soil bacterial and fungal community structure across a range of unimproved and semi-improved upland grasslands. Microbiology Ecology 50 (2005) 463-473
18. Kruskal J.B. Multidimensional scaling by optimizing goodness-of-fit to a nonmetric hypothesis. Psychometrika 22 (1964) 1-27
19. Liu W.T., Marsh T.L., Cheng M., and Forney L.J. Characterisation of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Applied and Environmental Microbiology 63 (1997) 4516-4522
20. Lopez Z., Vila J., and Grifoll M. Metabolism of fluoranthene by mycobacterial strains isolated by their ability to grow in fluoranthene or pyrene. Journal of Industrial Microbiology and Biotechnology 32 (2005) 455-464
21. MacNaughton S.J., Stephen J.R., Venosa A.D., Davis G.A., Chang Y., and White D.C. Microbial population changes during bioremediation of an experimental oil spill. Applied and Environmental Microbiology 65 (1999) 3566-3574
22. Maliszewska-Kordybach B. Persistent organic contaminants in the environment: PAHs as a case study. In: Baveye P., Block J.-C., and Goncharuk V.V. (Eds). Bioavailability of Organic Xenobiotics in the Environment: Practical Consequences for the Environment (1999), Kluwer Academic Publishers, Dordecht, The Netherlands 3-34
23. Menzie C.A., Potocki B.B., and Santodonato J. Exposure to carcinogenic PAHs in the environment. Environmental Science & Technology 26 (1992) 1278-1284
24. Mills D.K., Fitzgerald K., Litchfield C.D., and Gillevet P.M. A comparison of DNA profiling techniques for monitoring nutrient impact on microbial community composition during bioremediation of petroleum-contaminated soils. Journal of Microbiological Methods 54 (2003) 57-74
25. Muckian L.M., Grant R.J., Doyle E.M., and Clipson N.J.W. Bacterial community structure in soils contaminated by polycyclic aromatic hydrocarbons. Chemosphere 68 (2007) 1535-1541
26. Mueller J.G., Chapman P.J., and Pritchard P.H. Creosote contaminated sites. Environmental Science & Technology 23 (1989) 1197-1201
27. Namkoong W., Hwang E.Y., Park J.S., and Choi J.Y. Bioremediation of diesel-contaminated soil with composting. Environmental Pollution 119 (2002) 23-31
28. Piontek K.R., and Simpkin T.J. Practicability of in-situ bioremediation at a wood-preserving site. In: Hinchee R.E., Leeson A., Semprini L., and Kee Ong S. (Eds). Bioremediation of Chlorinated and Polycyclic Aromatic Hydrocarbon Compounds (1994), CRC Press, Boca Raton, FL 117-128
29. Roling W.F.M., Milner M.G., Jones D.M., Lee K., Daniel F., Swannell R.J.P., and Head I.M. Robust hydrocarbon degradation and dynamics of bacterial communities during nutrient-enhanced oil spill bioremediation. Applied and Environmental Microbiology 68 (2002) 5537-5548
30. Torsvik V., and Ovreas L. Microbial diversity and function in soil: from genes to ecosystems. Current Opinion in Microbiology 5 (2002) 240-245
31. Tremaine S.C., McIntire P.E., Bell P.E., Siler A.K., Matolak N.B., Payne T.W., and Nimo N.A. constructed wetlands and ploughing vs. solid peroxygen treatment. In: Hinchee R.E., Leeson A., Semprini L., and Kee Ong S. (Eds). Bioremediation of water and soils contaminated with creosote: suspension and fixed-film bioreactors vs. Bioremediation of Chlorinated and Polycyclic Aromatic Hydrocarbon Compounds (1994), CRC Press, Boca Raton, FL 172-187
32. Vinas M., Sabate J., Espuny M.J., and Solanas A.M. Bacterial community dynamics and polycyclic aromatic hydrocarbon degradation during bioremediation of heavily creosote-contaminated soil. Applied and Environmental Microbiology 71 (2005) 7008-7018
33. Zhou E., and Crawford R.L. Effects of oxygen, nitrogen, and temperature on gasoline biodegradation in soil. Biodegradation 6 (1995) 127-140