메뉴 건너뛰기




Volumn 47, Issue 10, 2014, Pages 558-562

Secondary structure of the Irf7 5'-UTR, analyzed using SHAPE (selective 2'-hydroxyl acylation analyzed by primer extension)

Author keywords

1M7; Irf7; OASL1; Secondary structure; SHAPE

Indexed keywords

1-METHYL-7-NITROISATOIC ANHYDRIDE; 5' UNTRANSLATED REGION; ADENOSINE; INTERFERON REGULATORY FACTOR 7; OXAZINE DERIVATIVE; PRIMER DNA;

EID: 84908885286     PISSN: 19766696     EISSN: 1976670X     Source Type: Journal    
DOI: 10.5483/BMBRep.2014.47.10.281     Document Type: Article
Times cited : (3)

References (21)
  • 1
    • 32944464648 scopus 로고    scopus 로고
    • Pathogen recognition and innate immunity
    • Akira, S., Uematsu, S. and Takeuchi, O. (2006) Pathogen recognition and innate immunity. Cell 124, 783-801.
    • (2006) Cell , vol.124 , pp. 783-801
    • Akira, S.1    Uematsu, S.2    Takeuchi, O.3
  • 2
    • 34548656855 scopus 로고    scopus 로고
    • Signaling pathways downstream of pattern-recognition receptors and their cross talk
    • Lee, M. S. and Kim, Y. J. (2007) Signaling pathways downstream of pattern-recognition receptors and their cross talk. Annu. Rev. Biochem. 76, 447-480.
    • (2007) Annu. Rev. Biochem. , vol.76 , pp. 447-480
    • Lee, M.S.1    Kim, Y.J.2
  • 3
    • 84875416974 scopus 로고    scopus 로고
    • OASL1 inhibits translation of the type I interferon-regulating transcription factor Irf7
    • Lee, M. S., Kim, B., Oh, G. T. and Kim, Y. J. (2013) OASL1 inhibits translation of the type I interferon-regulating transcription factor Irf7. Nat. Immunol. 14, 346-355.
    • (2013) Nat. Immunol. , vol.14 , pp. 346-355
    • Lee, M.S.1    Kim, B.2    Oh, G.T.3    Kim, Y.J.4
  • 4
    • 0035061538 scopus 로고    scopus 로고
    • IRF family of transcription factors as regulators of host defense
    • Taniguchi, T., Ogasawara, K., Takaoka, A. and Tanaka, N. (2001) IRF family of transcription factors as regulators of host defense. Annu. Rev. Immunol. 19, 623-655.
    • (2001) Annu. Rev. Immunol. , vol.19 , pp. 623-655
    • Taniguchi, T.1    Ogasawara, K.2    Takaoka, A.3    Tanaka, N.4
  • 5
    • 38949212626 scopus 로고    scopus 로고
    • Interferon regulatory factor family of transcription factors and regulation of oncogenesis
    • Takaoka, A., Tamura, T. and Taniguchi, T. (2008) Interferon regulatory factor family of transcription factors and regulation of oncogenesis. Cancer Sci. 99, 467-478.
    • (2008) Cancer Sci. , vol.99 , pp. 467-478
    • Takaoka, A.1    Tamura, T.2    Taniguchi, T.3
  • 7
    • 80052284504 scopus 로고    scopus 로고
    • Irf7: activation, regulation, modification and function
    • Ning, S., Pagano, J. S. and Barber, G. N. (2011) Irf7: activation, regulation, modification and function. Genes Immun. 12, 399-414.
    • (2011) Genes Immun. , vol.12 , pp. 399-414
    • Ning, S.1    Pagano, J.S.2    Barber, G.N.3
  • 8
    • 0032434924 scopus 로고    scopus 로고
    • Positive feedback regulation of type I IFN genes by the IFN-inducible transcription factor IRF-7
    • Sato, M., Hata, N., Asagiri, M., Nakaya, T., Taniguchi, T. and Tanaka, N. (1998) Positive feedback regulation of type I IFN genes by the IFN-inducible transcription factor IRF-7. FEBS Lett. 441, 106-110.
    • (1998) FEBS Lett. , vol.441 , pp. 106-110
    • Sato, M.1    Hata, N.2    Asagiri, M.3    Nakaya, T.4    Taniguchi, T.5    Tanaka, N.6
  • 10
    • 84877063192 scopus 로고    scopus 로고
    • Genome-wide mapping of RNA structure using nuclease digestion and high-throughput sequencing
    • Wan, Y., Qu, K., Ouyang, Z. and Chang, H. Y. (2013) Genome-wide mapping of RNA structure using nuclease digestion and high-throughput sequencing. Nat. Protoc. 8, 849-869.
    • (2013) Nat. Protoc. , vol.8 , pp. 849-869
    • Wan, Y.1    Qu, K.2    Ouyang, Z.3    Chang, H.Y.4
  • 11
    • 34247162792 scopus 로고    scopus 로고
    • A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry
    • Mortimer, S. A. and Weeks, K. M. (2007) A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry. J. Am. Chem. Soc. 129, 4144-4145.
    • (2007) J. Am. Chem. Soc. , vol.129 , pp. 4144-4145
    • Mortimer, S.A.1    Weeks, K.M.2
  • 13
    • 79958100720 scopus 로고    scopus 로고
    • The cap-binding translation initiation factor, eIF4E, binds a pseudoknot in a viral cap-independent translation element
    • Wang, Z., Parisien, M., Scheets, K. and Miller, W. A. (2011) The cap-binding translation initiation factor, eIF4E, binds a pseudoknot in a viral cap-independent translation element. Structure 19, 868-880.
    • (2011) Structure , vol.19 , pp. 868-880
    • Wang, Z.1    Parisien, M.2    Scheets, K.3    Miller, W.A.4
  • 14
    • 77957139491 scopus 로고    scopus 로고
    • SHAPE-directed RNA secondary structure prediction
    • Low, J. T. and Weeks, K. M. (2010) SHAPE-directed RNA secondary structure prediction. Methods 52, 150-158.
    • (2010) Methods , vol.52 , pp. 150-158
    • Low, J.T.1    Weeks, K.M.2
  • 15
    • 0038185346 scopus 로고    scopus 로고
    • Post-transcriptional regulation of gene expression by degradation of messenger RNAs
    • Bevilacqua, A., Ceriani, M. C., Capaccioli, S. and Nicolin, A. (2003) Post-transcriptional regulation of gene expression by degradation of messenger RNAs. J. Cell. Physiol. 195, 356-372.
    • (2003) J. Cell. Physiol. , vol.195 , pp. 356-372
    • Bevilacqua, A.1    Ceriani, M.C.2    Capaccioli, S.3    Nicolin, A.4
  • 16
    • 84888403663 scopus 로고    scopus 로고
    • Safer one-pot synthesis of the 'SHAPE' reagent 1-methyl-7-nitroisatoic anhydride (1m7)
    • Turner, R., Shefer, K. and Ares, M., Jr. (2013) Safer one-pot synthesis of the 'SHAPE' reagent 1-methyl-7-nitroisatoic anhydride (1m7). RNA 19, 1857-1863.
    • (2013) RNA , vol.19 , pp. 1857-1863
    • Turner, R.1    Shefer, K.2    Ares Jr., M.3
  • 17
    • 67649371451 scopus 로고    scopus 로고
    • Influence of nucleotide identity on ribose 2'-hydroxyl reactivity in RNA
    • Wilkinson, K. A., Vasa, S. M., Deigan, K. E., Mortimer, S. A., Giddings, M. C. and Weeks, K. M. (2009) Influence of nucleotide identity on ribose 2'-hydroxyl reactivity in RNA. RNA 15, 1314-1321.
    • (2009) RNA , vol.15 , pp. 1314-1321
    • Wilkinson, K.A.1    Vasa, S.M.2    Deigan, K.E.3    Mortimer, S.A.4    Giddings, M.C.5    Weeks, K.M.6
  • 19
    • 16244412610 scopus 로고    scopus 로고
    • RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE)
    • Merino, E. J., Wilkinson, K. A., Coughlan, J. L. and Weeks, K. M. (2005) RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE). J. Am. Chem. Soc. 127, 4223-4231.
    • (2005) J. Am. Chem. Soc. , vol.127 , pp. 4223-4231
    • Merino, E.J.1    Wilkinson, K.A.2    Coughlan, J.L.3    Weeks, K.M.4
  • 20
    • 51949099863 scopus 로고    scopus 로고
    • Strong correlation between SHAPE chemistry and the generalized NMR order parameter (S2) in RNA
    • Gherghe, C. M., Shajani, Z., Wilkinson, K. A., Varani, G. and Weeks, K. M. (2008) Strong correlation between SHAPE chemistry and the generalized NMR order parameter (S2) in RNA. J. Am. Chem. Soc. 130, 12244-12245.
    • (2008) J. Am. Chem. Soc. , vol.130 , pp. 12244-12245
    • Gherghe, C.M.1    Shajani, Z.2    Wilkinson, K.A.3    Varani, G.4    Weeks, K.M.5
  • 21
    • 38449119903 scopus 로고    scopus 로고
    • DMS footprinting of structured RNAs and RNA-protein complexes
    • Tijerina, P., Mohr, S. and Russell, R. (2007) DMS footprinting of structured RNAs and RNA-protein complexes. Nat. Protoc. 2, 2608-2623.
    • (2007) Nat. Protoc. , vol.2 , pp. 2608-2623
    • Tijerina, P.1    Mohr, S.2    Russell, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.