-
1
-
-
50849106034
-
A unique conformation of the anticodon stem-loop is associated with the capacity of tRNAfMet to initiate protein synthesis
-
Barraud P, Schmitt E, Mechulam Y, Dardel F, Tisne C. 2008. A unique conformation of the anticodon stem-loop is associated with the capacity of tRNAfMet to initiate protein synthesis. Nucleic Acids Res 36: 4894-4901.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 4894-4901
-
-
Barraud, P.1
Schmitt, E.2
Mechulam, Y.3
Dardel, F.4
Tisne, C.5
-
2
-
-
34548756072
-
A practical method for preparation of 4-hydroxyquinolinone esters
-
Beutner GL, Kuethe JT, Yasuda N. 2007. A practical method for preparation of 4-hydroxyquinolinone esters. J Org Chem 72: 7058-7061.
-
(2007)
J Org Chem
, vol.72
, pp. 7058-7061
-
-
Beutner, G.L.1
Kuethe, J.T.2
Yasuda, N.3
-
3
-
-
33845552896
-
Report on thermal reaction
-
Buckley J, Webb RL, Laird T, Ward J. 1982. Report on thermal reaction. Chem Eng News 60(28): 5.
-
(1982)
Chem Eng News
, vol.60
, Issue.28
, pp. 5
-
-
Buckley, J.1
Webb, R.L.2
Laird, T.3
Ward, J.4
-
4
-
-
49949131868
-
Separation of two initiator transfer RNAs from E. coli
-
Cory S, Dube SK, Clark BF, Marcker KA. 1968. Separation of two initiator transfer RNAs from E. coli. FEBS Lett 1: 259-261.
-
(1968)
FEBS Lett
, vol.1
, pp. 259-261
-
-
Cory, S.1
Dube, S.K.2
Clark, B.F.3
Marcker, K.A.4
-
6
-
-
33845554711
-
Sodium hydride and DMF
-
DeWall G. 1982. Sodium hydride and DMF. Chem Eng News 60(37): 5.
-
(1982)
Chem Eng News
, vol.60
, Issue.37
, pp. 5
-
-
DeWall, G.1
-
7
-
-
47349111103
-
Slow conformational dynamics at C2′-endo nucleotides in RNA
-
Gherghe CM, Mortimer SA, Krahn JM, Thompson NL, Weeks KM. 2008a. Slow conformational dynamics at C2′-endo nucleotides in RNA. J Am Chem Soc 130: 8884-8885.
-
(2008)
J Am Chem Soc
, vol.130
, pp. 8884-8885
-
-
Gherghe, C.M.1
Mortimer, S.A.2
Krahn, J.M.3
Thompson, N.L.4
Weeks, K.M.5
-
8
-
-
51949099863
-
Strong correlation between SHAPE chemistry and the generalized NMR order parameter (S2) in RNA
-
Gherghe CM, Shajani Z, Wilkinson KA, Varani G, Weeks KM. 2008b. Strong correlation between SHAPE chemistry and the generalized NMR order parameter (S2) in RNA. J Am Chem Soc 130: 12244-12245.
-
(2008)
J Am Chem Soc
, vol.130
, pp. 12244-12245
-
-
Gherghe, C.M.1
Shajani, Z.2
Wilkinson, K.A.3
Varani, G.4
Weeks, K.M.5
-
9
-
-
84875865461
-
Accurate SHAPE-directed RNA secondary structure modeling, including pseudoknots
-
Hajdin CE, Bellaousov S, Huggins W, Leonard CW, Mathews DH, Weeks KM. 2013. Accurate SHAPE-directed RNA secondary structure modeling, including pseudoknots. Proc Natl Acad Sci 110: 5498-5503.
-
(2013)
Proc Natl Acad Sci
, vol.110
, pp. 5498-5503
-
-
Hajdin, C.E.1
Bellaousov, S.2
Huggins, W.3
Leonard, C.W.4
Mathews, D.H.5
Weeks, K.M.6
-
10
-
-
0026645976
-
Hydroxyl radical cleavage of tRNA in the ribosomal P site
-
Huttenhofer A, Noller HF. 1992. Hydroxyl radical cleavage of tRNA in the ribosomal P site. Proc Natl Acad Sci 89: 7851-7855.
-
(1992)
Proc Natl Acad Sci
, vol.89
, pp. 7851-7855
-
-
Huttenhofer, A.1
Noller, H.F.2
-
11
-
-
0021991295
-
Secondary structure of the circular form of the Tetrahymena rRNA intervening sequence: A technique for RNA structure analysis using chemical probes and reverse transcriptase
-
Inoue T, Cech TR. 1985. Secondary structure of the circular form of the Tetrahymena rRNA intervening sequence: A technique for RNA structure analysis using chemical probes and reverse transcriptase. Proc Natl Acad Sci 82: 648-652.
-
(1985)
Proc Natl Acad Sci
, vol.82
, pp. 648-652
-
-
Inoue, T.1
Cech, T.R.2
-
12
-
-
84871411741
-
QuShape: Rapid, accurate, and best-practices quantification of nucleic acid probing information, resolved by capillary electrophoresis
-
Karabiber F, McGinnis JL, Favorov OV, Weeks KM. 2013. QuShape: Rapid, accurate, and best-practices quantification of nucleic acid probing information, resolved by capillary electrophoresis. RNA 19: 63-73.
-
(2013)
RNA
, vol.19
, pp. 63-73
-
-
Karabiber, F.1
McGinnis, J.L.2
Favorov, O.V.3
Weeks, K.M.4
-
13
-
-
0026588009
-
Construction and characterization of an Escherichia coli mutant deficient in the metY gene encoding tRNA(f2Met): Either tRNA(f1Met) or tRNA(f2Met) is required for cell growth
-
Kenri T, Imamoto F, Kano Y. 1992. Construction and characterization of an Escherichia coli mutant deficient in the metY gene encoding tRNA(f2Met): Either tRNA(f1Met) or tRNA(f2Met) is required for cell growth. Gene 114: 109-114.
-
(1992)
Gene
, vol.114
, pp. 109-114
-
-
Kenri, T.1
Imamoto, F.2
Kano, Y.3
-
14
-
-
80052729501
-
Understanding the errors of SHAPE-directed RNA structure modeling
-
Kladwang W, VanLang CC, Cordero P, Das R. 2011. Understanding the errors of SHAPE-directed RNA structure modeling. Biochemistry 50: 8049-8056.
-
(2011)
Biochemistry
, vol.50
, pp. 8049-8056
-
-
Kladwang, W.1
VanLang, C.C.2
Cordero, P.3
Das, R.4
-
15
-
-
84871434763
-
Principles for understanding the accuracy of SHAPE-directed RNA structure modeling
-
Leonard CW, Hajdin CE, Karabiber F, Mathews DH, Favorov OV, Dokholyan NV, Weeks KM. 2013. Principles for understanding the accuracy of SHAPE-directed RNA structure modeling. Biochemistry 52: 588-595.
-
(2013)
Biochemistry
, vol.52
, pp. 588-595
-
-
Leonard, C.W.1
Hajdin, C.E.2
Karabiber, F.3
Mathews, D.H.4
Favorov, O.V.5
Dokholyan, N.V.6
Weeks, K.M.7
-
16
-
-
77957139491
-
SHAPE-directed RNA secondary structure prediction
-
Low JT, Weeks KM. 2010. SHAPE-directed RNA secondary structure prediction. Methods 52: 150-158.
-
(2010)
Methods
, vol.52
, pp. 150-158
-
-
Low, J.T.1
Weeks, K.M.2
-
17
-
-
16244412610
-
RNA structure analysis at single nucleotide resolution by selective 2′-hydroxyl acylation and primer extension (SHAPE)
-
Merino EJ, Wilkinson KA, Coughlan JL, Weeks KM. 2005. RNA structure analysis at single nucleotide resolution by selective 2′-hydroxyl acylation and primer extension (SHAPE). J Am Chem Soc 127: 4223-4231.
-
(2005)
J Am Chem Soc
, vol.127
, pp. 4223-4231
-
-
Merino, E.J.1
Wilkinson, K.A.2
Coughlan, J.L.3
Weeks, K.M.4
-
18
-
-
34247162792
-
A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry
-
Mortimer SA, Weeks KM. 2007. A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry. J Am Chem Soc 129: 4144-4145.
-
(2007)
J Am Chem Soc
, vol.129
, pp. 4144-4145
-
-
Mortimer, S.A.1
Weeks, K.M.2
-
19
-
-
57149086080
-
Time-resolved RNA SHAPE chemistry
-
Mortimer SA, Weeks KM. 2008. Time-resolved RNA SHAPE chemistry. J Am Chem Soc 130: 16178-16180.
-
(2008)
J Am Chem Soc
, vol.130
, pp. 16178-16180
-
-
Mortimer, S.A.1
Weeks, K.M.2
-
20
-
-
84865187135
-
Determining RNA three-dimensional structures using low-resolution data
-
Parisien M, Major F. 2012. Determining RNA three-dimensional structures using low-resolution data. J Struct Biol 179: 252-260.
-
(2012)
J Struct Biol
, vol.179
, pp. 252-260
-
-
Parisien, M.1
Major, F.2
-
21
-
-
0019051754
-
Chemical probes for higher-order structure in RNA
-
Peattie DA, Gilbert W. 1980. Chemical probes for higher-order structure in RNA. Proc Natl Acad Sci 77: 4679-4682.
-
(1980)
Proc Natl Acad Sci
, vol.77
, pp. 4679-4682
-
-
Peattie, D.A.1
Gilbert, W.2
-
22
-
-
84873844807
-
Statistical analysis of SHAPE-directed RNA secondary structure modeling
-
Ramachandran S, Ding F, Weeks KM, Dokholyan NV. 2013. Statistical analysis of SHAPE-directed RNA secondary structure modeling. Biochemistry 52: 596-599.
-
(2013)
Biochemistry
, vol.52
, pp. 596-599
-
-
Ramachandran, S.1
Ding, F.2
Weeks, K.M.3
Dokholyan, N.V.4
-
23
-
-
84897585709
-
In-line probing analysis of riboswitches
-
Regulski EE, Breaker RR. 2008. In-line probing analysis of riboswitches. Methods Mol Biol 419: 53-67.
-
(2008)
Methods Mol Biol
, vol.419
, pp. 53-67
-
-
Regulski, E.E.1
Breaker, R.R.2
-
24
-
-
77955834766
-
Selective 2′-hydroxyl acylation analyzed by protection from exoribonuclease
-
Steen KA, Malhotra A, Weeks KM. 2010. Selective 2′-hydroxyl acylation analyzed by protection from exoribonuclease. J Am Chem Soc 132: 9940-9943.
-
(2010)
J Am Chem Soc
, vol.132
, pp. 9940-9943
-
-
Steen, K.A.1
Malhotra, A.2
Weeks, K.M.3
-
25
-
-
84865133584
-
Fingerprinting noncanonical and tertiary RNA structures by differential SHAPE reactivity
-
Steen KA, Rice GM, Weeks KM. 2012. Fingerprinting noncanonical and tertiary RNA structures by differential SHAPE reactivity. J Am Chem Soc 134: 13160-13163.
-
(2012)
J Am Chem Soc
, vol.134
, pp. 13160-13163
-
-
Steen, K.A.1
Rice, G.M.2
Weeks, K.M.3
-
26
-
-
0024387339
-
Hydroxyl radical "footprinting" of RNA: Application to pre-mRNA splicing complexes
-
Wang XD, Padgett RA. 1989. Hydroxyl radical "footprinting" of RNA: Application to pre-mRNA splicing complexes. Proc Natl Acad Sci 86: 7795-7799.
-
(1989)
Proc Natl Acad Sci
, vol.86
, pp. 7795-7799
-
-
Wang, X.D.1
Padgett, R.A.2
-
27
-
-
40849118189
-
Complex ligand-induced conformational changes in tRNA(Asp) revealed by single-nucleotide resolution SHAPE chemistry
-
Wang B, Wilkinson KA, Weeks KM. 2008. Complex ligand-induced conformational changes in tRNA(Asp) revealed by single-nucleotide resolution SHAPE chemistry. Biochemistry 47: 3454-3461.
-
(2008)
Biochemistry
, vol.47
, pp. 3454-3461
-
-
Wang, B.1
Wilkinson, K.A.2
Weeks, K.M.3
-
28
-
-
84861541877
-
RNA folding with soft constraints: Reconciliation of probing data and thermodynamic secondary structure prediction
-
Washietl S, Hofacker IL, Stadler PF, Kellis M. 2012.RNA folding with soft constraints: Reconciliation of probing data and thermodynamic secondary structure prediction. Nucleic Acids Res 40: 4261-4272.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 4261-4272
-
-
Washietl, S.1
Hofacker, I.L.2
Stadler, P.F.3
Kellis, M.4
-
29
-
-
16344370497
-
RNA SHAPE chemistry reveals nonhierarchical interactions dominate equilibrium structural transitions in tRNA(Asp) transcripts
-
Wilkinson KA, Merino EJ, Weeks KM. 2005. RNA SHAPE chemistry reveals nonhierarchical interactions dominate equilibrium structural transitions in tRNA(Asp) transcripts. J Am Chem Soc 127: 4659-4667.
-
(2005)
J Am Chem Soc
, vol.127
, pp. 4659-4667
-
-
Wilkinson, K.A.1
Merino, E.J.2
Weeks, K.M.3
-
30
-
-
33947720028
-
Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): Quantitative RNA structure analysis at single nucleotide resolution
-
Wilkinson KA, Merino EJ, Weeks KM. 2006. Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): Quantitative RNA structure analysis at single nucleotide resolution. Nat Protoc 1: 1610-1616.
-
(2006)
Nat Protoc
, vol.1
, pp. 1610-1616
-
-
Wilkinson, K.A.1
Merino, E.J.2
Weeks, K.M.3
-
31
-
-
67649371451
-
Influence of nucleotide identity on ribose 2′-hydroxyl reactivity in RNA
-
Wilkinson KA, Vasa SM, Deigan KE, Mortimer SA, Giddings MC, Weeks KM. 2009. Influence of nucleotide identity on ribose 2′-hydroxyl reactivity in RNA. RNA 15: 1314-1321.
-
(2009)
RNA
, vol.15
, pp. 1314-1321
-
-
Wilkinson, K.A.1
Vasa, S.M.2
Deigan, K.E.3
Mortimer, S.A.4
Giddings, M.C.5
Weeks, K.M.6
-
32
-
-
84867593489
-
Integrating chemical footprinting data into RNA secondary structure prediction
-
Zarringhalam K, Meyer MM, Dotu I, Chuang JH, Clote P. 2012. Integrating chemical footprinting data into RNA secondary structure prediction. PLoS One 7: e45160.
-
(2012)
PLoS One
, vol.7
-
-
Zarringhalam, K.1
Meyer, M.M.2
Dotu, I.3
Chuang, J.H.4
Clote, P.5
|