메뉴 건너뛰기




Volumn 19, Issue 12, 2013, Pages 1857-1863

Safer one-pot synthesis of the 'SHAPE' reagent 1-methyl-7-nitroisatoic anhydride (1m7)

Author keywords

1 methyl 7 nitroisatoic anhydride; 1m7; RNA structure; SHAPE

Indexed keywords

1 METHYL 7 NITROISATOIC ANHYDRIDE; ACID ANHYDRIDE; ANION; DIMETHYL SULFOXIDE; GLASS; HYDROXYL GROUP; METHYL IODIDE; N,N DIMETHYLFORMAMIDE; NITROGEN; ORGANIC SOLVENT; REAGENT; TRANSFER RNA; UNCLASSIFIED DRUG; WATER;

EID: 84888403663     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.042374.113     Document Type: Article
Times cited : (27)

References (32)
  • 1
    • 50849106034 scopus 로고    scopus 로고
    • A unique conformation of the anticodon stem-loop is associated with the capacity of tRNAfMet to initiate protein synthesis
    • Barraud P, Schmitt E, Mechulam Y, Dardel F, Tisne C. 2008. A unique conformation of the anticodon stem-loop is associated with the capacity of tRNAfMet to initiate protein synthesis. Nucleic Acids Res 36: 4894-4901.
    • (2008) Nucleic Acids Res , vol.36 , pp. 4894-4901
    • Barraud, P.1    Schmitt, E.2    Mechulam, Y.3    Dardel, F.4    Tisne, C.5
  • 2
    • 34548756072 scopus 로고    scopus 로고
    • A practical method for preparation of 4-hydroxyquinolinone esters
    • Beutner GL, Kuethe JT, Yasuda N. 2007. A practical method for preparation of 4-hydroxyquinolinone esters. J Org Chem 72: 7058-7061.
    • (2007) J Org Chem , vol.72 , pp. 7058-7061
    • Beutner, G.L.1    Kuethe, J.T.2    Yasuda, N.3
  • 4
    • 49949131868 scopus 로고
    • Separation of two initiator transfer RNAs from E. coli
    • Cory S, Dube SK, Clark BF, Marcker KA. 1968. Separation of two initiator transfer RNAs from E. coli. FEBS Lett 1: 259-261.
    • (1968) FEBS Lett , vol.1 , pp. 259-261
    • Cory, S.1    Dube, S.K.2    Clark, B.F.3    Marcker, K.A.4
  • 6
    • 33845554711 scopus 로고
    • Sodium hydride and DMF
    • DeWall G. 1982. Sodium hydride and DMF. Chem Eng News 60(37): 5.
    • (1982) Chem Eng News , vol.60 , Issue.37 , pp. 5
    • DeWall, G.1
  • 8
    • 51949099863 scopus 로고    scopus 로고
    • Strong correlation between SHAPE chemistry and the generalized NMR order parameter (S2) in RNA
    • Gherghe CM, Shajani Z, Wilkinson KA, Varani G, Weeks KM. 2008b. Strong correlation between SHAPE chemistry and the generalized NMR order parameter (S2) in RNA. J Am Chem Soc 130: 12244-12245.
    • (2008) J Am Chem Soc , vol.130 , pp. 12244-12245
    • Gherghe, C.M.1    Shajani, Z.2    Wilkinson, K.A.3    Varani, G.4    Weeks, K.M.5
  • 10
    • 0026645976 scopus 로고
    • Hydroxyl radical cleavage of tRNA in the ribosomal P site
    • Huttenhofer A, Noller HF. 1992. Hydroxyl radical cleavage of tRNA in the ribosomal P site. Proc Natl Acad Sci 89: 7851-7855.
    • (1992) Proc Natl Acad Sci , vol.89 , pp. 7851-7855
    • Huttenhofer, A.1    Noller, H.F.2
  • 11
    • 0021991295 scopus 로고
    • Secondary structure of the circular form of the Tetrahymena rRNA intervening sequence: A technique for RNA structure analysis using chemical probes and reverse transcriptase
    • Inoue T, Cech TR. 1985. Secondary structure of the circular form of the Tetrahymena rRNA intervening sequence: A technique for RNA structure analysis using chemical probes and reverse transcriptase. Proc Natl Acad Sci 82: 648-652.
    • (1985) Proc Natl Acad Sci , vol.82 , pp. 648-652
    • Inoue, T.1    Cech, T.R.2
  • 12
    • 84871411741 scopus 로고    scopus 로고
    • QuShape: Rapid, accurate, and best-practices quantification of nucleic acid probing information, resolved by capillary electrophoresis
    • Karabiber F, McGinnis JL, Favorov OV, Weeks KM. 2013. QuShape: Rapid, accurate, and best-practices quantification of nucleic acid probing information, resolved by capillary electrophoresis. RNA 19: 63-73.
    • (2013) RNA , vol.19 , pp. 63-73
    • Karabiber, F.1    McGinnis, J.L.2    Favorov, O.V.3    Weeks, K.M.4
  • 13
    • 0026588009 scopus 로고
    • Construction and characterization of an Escherichia coli mutant deficient in the metY gene encoding tRNA(f2Met): Either tRNA(f1Met) or tRNA(f2Met) is required for cell growth
    • Kenri T, Imamoto F, Kano Y. 1992. Construction and characterization of an Escherichia coli mutant deficient in the metY gene encoding tRNA(f2Met): Either tRNA(f1Met) or tRNA(f2Met) is required for cell growth. Gene 114: 109-114.
    • (1992) Gene , vol.114 , pp. 109-114
    • Kenri, T.1    Imamoto, F.2    Kano, Y.3
  • 14
    • 80052729501 scopus 로고    scopus 로고
    • Understanding the errors of SHAPE-directed RNA structure modeling
    • Kladwang W, VanLang CC, Cordero P, Das R. 2011. Understanding the errors of SHAPE-directed RNA structure modeling. Biochemistry 50: 8049-8056.
    • (2011) Biochemistry , vol.50 , pp. 8049-8056
    • Kladwang, W.1    VanLang, C.C.2    Cordero, P.3    Das, R.4
  • 16
    • 77957139491 scopus 로고    scopus 로고
    • SHAPE-directed RNA secondary structure prediction
    • Low JT, Weeks KM. 2010. SHAPE-directed RNA secondary structure prediction. Methods 52: 150-158.
    • (2010) Methods , vol.52 , pp. 150-158
    • Low, J.T.1    Weeks, K.M.2
  • 17
    • 16244412610 scopus 로고    scopus 로고
    • RNA structure analysis at single nucleotide resolution by selective 2′-hydroxyl acylation and primer extension (SHAPE)
    • Merino EJ, Wilkinson KA, Coughlan JL, Weeks KM. 2005. RNA structure analysis at single nucleotide resolution by selective 2′-hydroxyl acylation and primer extension (SHAPE). J Am Chem Soc 127: 4223-4231.
    • (2005) J Am Chem Soc , vol.127 , pp. 4223-4231
    • Merino, E.J.1    Wilkinson, K.A.2    Coughlan, J.L.3    Weeks, K.M.4
  • 18
    • 34247162792 scopus 로고    scopus 로고
    • A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry
    • Mortimer SA, Weeks KM. 2007. A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry. J Am Chem Soc 129: 4144-4145.
    • (2007) J Am Chem Soc , vol.129 , pp. 4144-4145
    • Mortimer, S.A.1    Weeks, K.M.2
  • 19
    • 57149086080 scopus 로고    scopus 로고
    • Time-resolved RNA SHAPE chemistry
    • Mortimer SA, Weeks KM. 2008. Time-resolved RNA SHAPE chemistry. J Am Chem Soc 130: 16178-16180.
    • (2008) J Am Chem Soc , vol.130 , pp. 16178-16180
    • Mortimer, S.A.1    Weeks, K.M.2
  • 20
    • 84865187135 scopus 로고    scopus 로고
    • Determining RNA three-dimensional structures using low-resolution data
    • Parisien M, Major F. 2012. Determining RNA three-dimensional structures using low-resolution data. J Struct Biol 179: 252-260.
    • (2012) J Struct Biol , vol.179 , pp. 252-260
    • Parisien, M.1    Major, F.2
  • 21
    • 0019051754 scopus 로고
    • Chemical probes for higher-order structure in RNA
    • Peattie DA, Gilbert W. 1980. Chemical probes for higher-order structure in RNA. Proc Natl Acad Sci 77: 4679-4682.
    • (1980) Proc Natl Acad Sci , vol.77 , pp. 4679-4682
    • Peattie, D.A.1    Gilbert, W.2
  • 22
    • 84873844807 scopus 로고    scopus 로고
    • Statistical analysis of SHAPE-directed RNA secondary structure modeling
    • Ramachandran S, Ding F, Weeks KM, Dokholyan NV. 2013. Statistical analysis of SHAPE-directed RNA secondary structure modeling. Biochemistry 52: 596-599.
    • (2013) Biochemistry , vol.52 , pp. 596-599
    • Ramachandran, S.1    Ding, F.2    Weeks, K.M.3    Dokholyan, N.V.4
  • 23
    • 84897585709 scopus 로고    scopus 로고
    • In-line probing analysis of riboswitches
    • Regulski EE, Breaker RR. 2008. In-line probing analysis of riboswitches. Methods Mol Biol 419: 53-67.
    • (2008) Methods Mol Biol , vol.419 , pp. 53-67
    • Regulski, E.E.1    Breaker, R.R.2
  • 24
    • 77955834766 scopus 로고    scopus 로고
    • Selective 2′-hydroxyl acylation analyzed by protection from exoribonuclease
    • Steen KA, Malhotra A, Weeks KM. 2010. Selective 2′-hydroxyl acylation analyzed by protection from exoribonuclease. J Am Chem Soc 132: 9940-9943.
    • (2010) J Am Chem Soc , vol.132 , pp. 9940-9943
    • Steen, K.A.1    Malhotra, A.2    Weeks, K.M.3
  • 25
    • 84865133584 scopus 로고    scopus 로고
    • Fingerprinting noncanonical and tertiary RNA structures by differential SHAPE reactivity
    • Steen KA, Rice GM, Weeks KM. 2012. Fingerprinting noncanonical and tertiary RNA structures by differential SHAPE reactivity. J Am Chem Soc 134: 13160-13163.
    • (2012) J Am Chem Soc , vol.134 , pp. 13160-13163
    • Steen, K.A.1    Rice, G.M.2    Weeks, K.M.3
  • 26
    • 0024387339 scopus 로고
    • Hydroxyl radical "footprinting" of RNA: Application to pre-mRNA splicing complexes
    • Wang XD, Padgett RA. 1989. Hydroxyl radical "footprinting" of RNA: Application to pre-mRNA splicing complexes. Proc Natl Acad Sci 86: 7795-7799.
    • (1989) Proc Natl Acad Sci , vol.86 , pp. 7795-7799
    • Wang, X.D.1    Padgett, R.A.2
  • 27
    • 40849118189 scopus 로고    scopus 로고
    • Complex ligand-induced conformational changes in tRNA(Asp) revealed by single-nucleotide resolution SHAPE chemistry
    • Wang B, Wilkinson KA, Weeks KM. 2008. Complex ligand-induced conformational changes in tRNA(Asp) revealed by single-nucleotide resolution SHAPE chemistry. Biochemistry 47: 3454-3461.
    • (2008) Biochemistry , vol.47 , pp. 3454-3461
    • Wang, B.1    Wilkinson, K.A.2    Weeks, K.M.3
  • 28
    • 84861541877 scopus 로고    scopus 로고
    • RNA folding with soft constraints: Reconciliation of probing data and thermodynamic secondary structure prediction
    • Washietl S, Hofacker IL, Stadler PF, Kellis M. 2012.RNA folding with soft constraints: Reconciliation of probing data and thermodynamic secondary structure prediction. Nucleic Acids Res 40: 4261-4272.
    • (2012) Nucleic Acids Res , vol.40 , pp. 4261-4272
    • Washietl, S.1    Hofacker, I.L.2    Stadler, P.F.3    Kellis, M.4
  • 29
    • 16344370497 scopus 로고    scopus 로고
    • RNA SHAPE chemistry reveals nonhierarchical interactions dominate equilibrium structural transitions in tRNA(Asp) transcripts
    • Wilkinson KA, Merino EJ, Weeks KM. 2005. RNA SHAPE chemistry reveals nonhierarchical interactions dominate equilibrium structural transitions in tRNA(Asp) transcripts. J Am Chem Soc 127: 4659-4667.
    • (2005) J Am Chem Soc , vol.127 , pp. 4659-4667
    • Wilkinson, K.A.1    Merino, E.J.2    Weeks, K.M.3
  • 30
    • 33947720028 scopus 로고    scopus 로고
    • Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): Quantitative RNA structure analysis at single nucleotide resolution
    • Wilkinson KA, Merino EJ, Weeks KM. 2006. Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): Quantitative RNA structure analysis at single nucleotide resolution. Nat Protoc 1: 1610-1616.
    • (2006) Nat Protoc , vol.1 , pp. 1610-1616
    • Wilkinson, K.A.1    Merino, E.J.2    Weeks, K.M.3
  • 32
    • 84867593489 scopus 로고    scopus 로고
    • Integrating chemical footprinting data into RNA secondary structure prediction
    • Zarringhalam K, Meyer MM, Dotu I, Chuang JH, Clote P. 2012. Integrating chemical footprinting data into RNA secondary structure prediction. PLoS One 7: e45160.
    • (2012) PLoS One , vol.7
    • Zarringhalam, K.1    Meyer, M.M.2    Dotu, I.3    Chuang, J.H.4    Clote, P.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.