Direct quantification of loop interaction and π-π Stacking for G-quadruplex stability at the submolecular level

Journal of the American Chemical Society

Volumn 136, Issue 44, 2014, Pages 15537-15544

  Ghimire, Chiran ^a   Park, Soyoung ^b,c   Iida, Keisuke ^d   Yangyuoru, Philip ^a   Otomo, Haruka ^b,c   Yu, Zhongbo ^a   Nagasawa, Kazuo ^d   Sugiyama, Hiroshi ^b,c   Mao, Hanbin ^a  

^a KENT STATE UNIVERSITY   (United States)

^b KYOTO UNIVERSITY   (Japan)

^c KYOTO UNIVERSITY   (Japan)

^d TOKYO UNIVERSITY OF AGRICULTURE AND TECHNOLOGY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

MECHANICAL STABILITY; MOLECULES;

BIOLOGICAL FUNCTIONS; BIOLOGICAL MOLECULE; INTERACTING MOLECULES; LOOP INTERACTION; MECHANICAL UNFOLDING; MODIFIED GUANINE; NATIVE STRUCTURES; SMALL MOLECULES;

DNA SEQUENCES;

GUANINE QUADRUPLEX; TELOMESTATIN;

ARTICLE; BINDING AFFINITY; BIOLOGICAL FUNCTIONS; CHEMICAL INTERACTION; CIRCULAR DICHROISM; CLICK CHEMISTRY; DNA CONFORMATION; HUMAN; HYDROGEN BOND; LIGAND BINDING; MOLECULAR STABILITY; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; SURFACE PLASMON RESONANCE;

CIRCULAR DICHROISM; G-QUADRUPLEXES; SURFACE PLASMON RESONANCE;

EID: 84908632204     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja503585h     Document Type: Article

References (28)

1. Biffi, G.; Tannahill, D.; McCafferty, J.; Balasubramanian, S. Nat. Chem. 2013, 5, 182
2. Hurley, L. H.; Wheelhouse, R. T.; Sun, D.; Kerwin, S. M.; Salazar, M.; Fedoroff, O. Y.; Han, F. X.; Han, H.; Izbicka, E.; Von Hoff, D. D. Pharmacol. Ther. 2000, 85, 141
3. Guittat, L.; Alberti, P.; Gomez, D.; De Cian, A.; Pennarun, G.; Lemarteleur, T.; Belmokhtar, C.; Paterski, R.; Morjani, H.; Trentesaux, C.; Mandine, E.; Boussin, F.; Mailliet, P.; Lacroix, L.; Riou, J. F.; Mergny, J. L. Cytotechnology 2004, 45, 75
4. Kim, M.-Y.; Vankayalapati, H.; Shin-ya, K.; Wierzba, K. a.; Hurley, L. H. J. Am. Chem. Soc. 2002, 124, 2098
5. Koirala, D.; Yangyuoru, P. M.; Mao, H. Rev. Anal. Chem. 2013, 32, 197
6. Williamson, J. R. Annu. Rev. Biophys. Biomol. Struct. 1994, 23, 703
7. Burge, S.; Parkinson, G. N.; Hazel, P.; Todd, A. K.; Neidle, S. Nucleic Acids Res. 2006, 34, 5402
8. Chung, W. J.; Heddi, B.; Tera, M.; Iida, K.; Nagasawa, K.; Phan, A. T. J. Am. Chem. Soc. 2013, 135, 13495
9. Guédin, A.; Gros, J.; Alberti, P.; Mergny, J. L. Nucleic Acids Res. 2010, 38, 7858
10. Fujimoto, T.; Nakano, S.-i.; Sugimoto, N.; Miyoshi, D. J. Phys. Chem. B 2012, 963
11. Yu, Z.; Schonhoft, J. D.; Dhakal, S.; Bajracharya, R.; Hegde, R.; Basu, S.; Mao, H. J. Am. Chem. Soc. 2009, 131, 1876
12. Koirala, D.; Dhakal, S.; Ashbridge, B.; Sannohe, Y.; Rodriguez, R.; Sugiyama, H.; Balasubramanian, S.; Mao, H. Nat. Chem. 2011, 3, 782
13. Kolb, H. C.; Finn, M. G.; Sharpless, K. B. Angew. Chem., Int. Ed. 2001, 40, 2004
14. Krishna, H.; Caruthers, M. H. J. Am. Chem. Soc. 2012, 134, 11618
15. Yu, Z.; Koirala, D.; Cui, Y.; Easterling, L. F.; Zhao, Y.; Mao, H. J. Am. Chem. Soc. 2012, 134, 12338
16. Iida, K.; Majima, S.; Nakamura, T.; Seimiya, H.; Nagasawa, K. Molecules 2013, 18, 4328
17. Redman, J. E. Methods 2007, 43, 302
18. Rezler, E. M.; Seenisamy, J.; Bashyam, S.; Kim, M.-Y.; White, E.; Wilson, W. D.; Hurley, L. H. J. Am. Chem. Soc. 2005, 127, 9439
19. Wang, P.; Ren, L.; He, H.; Liang, F.; Zhou, X.; Tan, Z. ChemBioChem 2006, 7, 1155
20. Mao, H.; Luchette, P. Sens. Actuators B 2008, 129, 764
21. Baumann, C. G.; Smith, S. B.; Bloomfield, V. A.; Bustamante, C. Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 6185
22. Dhakal, S.; Cui, Y.; Koirala, D.; Ghimire, C.; Kushwaha, S.; Yu, Z.; Yangyuoru, P. M.; Mao, H. Nucleic Acids Res. 2013, 41, 3915
23. Jarzynski, C. Phys. Rev. Lett. 1997, 78, 2690
24. Palassini, M.; Ritort, F. Phys. Rev. Lett. 2011, 107, 060601
25. Dai, J.; Punchihewa, C.; Ambrus, A.; Chen, D.; Jones, R. A.; Yang, D. Nucleic Acids Res. 2007, 35, 2440
26. Zhu, H.; Xiao, S.; Liang, H. PLoS One 2013, 8, e71380
27. Iida, K.; Tera, M.; Hirokawa, T.; Shin-ya, K.; Nagasawa, K. Chem. Commun. 2009, 6481
28. Amemiya, Y.; Furunaga, Y.; Iida, K.; Tera, M.; Nagasawa, K.; Ikebukuro, K.; Nakamura, C. Chem. Commun. 2011, 47, 7485