Proteins at air-water interfaces: A coarse-grained model

Langmuir

Volumn 30, Issue 43, 2014, Pages 12888-12896

  Cieplak, Marek ^a   Allan, Daniel B ^b   Leheny, Robert L ^b   Reich, Daniel H ^b  

^a INSTITUTE OF PHYSICS   (Poland)

^b JOHNS HOPKINS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AIR WATER INTERFACES; COARSE GRAINED MODELS;

IMMOBILIZED PROTEIN; WATER;

AIR; ANIMAL; CHEMICAL STRUCTURE; CHEMISTRY; PROTEIN CONFORMATION;

AIR; ANIMALS; IMMOBILIZED PROTEINS; MODELS, MOLECULAR; PROTEIN CONFORMATION; WATER;

EID: 84908582519     PISSN: 07437463     EISSN: 15205827     Source Type: Journal    
DOI: 10.1021/la502465m     Document Type: Article

References (58)

1. Adam, N. K. The Physics and Chemistry of Surfaces; Oxford University Press: London, 1941.
2. Norde, W.; Giacomelli, C. E. BSA structural changes during homomolecular exchange between the adsorbed and the dissolved states J. Biotechnol. 2000, 79, 259-268
3. Graham, D. E.; Phillips, M. C. Proteins at liquid interfaces: Kinetics of adsorption and surface denaturation J. Colloid Interface Sci. 1979, 70, 403-414
4. Murray, B. S. Rheological properties of protein films Curr. Opin. Colloid Interface Sci. 2011, 16, 27-35
5. Proctor, G. B.; Hamdan, S.; Carpenter, G. H.; Wilde, P. A stathe;rin and calcium enriched layer at the air interface of human parotid Biochem. J. 2005, 389, 111-116
6. Alonso, C.; Waring, A.; Zasadzinski, J. A. Keeping lung surfactant where it belongs: Protein regulation of two-dimensional viscosity Biophys. J. 2005, 89, 266-273
7. Jordan, B. J.; Hong, R.; Gider, B.; Hill, J.; Emrick, T.; Rotello, V. M. Stabilization of α-chymotrypsin at air-water interface through surface binding to gold nanoparticle scaffolds Soft Matter 2006, 2, 558-560
8. Vessely, C. R.; Carpenter, J. F.; Schwartz, D. K. Calcium-induced changes to the molecular conformation and aggregate structure of β-casein at the air-water interface Biomacromolecules 2005, 6, 3334-3344
9. Miyasaka, T.; Koyama, K.; Ito, I. Quantum conversion and image detection by a bacteriorhodopsin-based artificial photoreceptor Science 1992, 255, 342-344
10. Gidalevitz, D.; Huang, Z.; Rice, S. A. Protein folding at the air-water interface studied with x-ray reflectivity Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 2608-2611
11. Bos, M. A.; van Vliet, T. Interfacial rheological properties of adsorbed protein layers and surfactants: a review Adv. Colloid Interface Sci. 2001, 91, 437-71
12. Martin, A. H.; Grolle, K.; Bos, M. A.; Stuart, M. A.; T. van Vliet, T. Network forming properties of various proteins adsorbed at the air/water interface in relation to foam stability J. Colloid Interface Sci. 2002, 254, 175-183
13. Bantchev, G. B.; Schwartz, D. K. Surface shear rheology of beta-casein layers at the air/solution interface: Formation of a two-dimensional physical gel Langmuir 2003, 19, 2673-2682
14. Roberts, S. A.; Kellaway, I. W.; Taylor, K. M. G.; Warburton, B.; Peters, K. Combined surface pressure-interfacial shear rheology study of the effect of pH on the adsorption of proteins at the air-water interface Langmuir 2005, 21, 7342-8
15. Dickinson, E.; Matsumura, Y. Time-dependent polymerization of β-lactoglobulin through disulfide bonds at the oil-water interface in emulsions Int. J. Biol. Macromol. 1991, 13, 26-30
16. Lefèvre, T.; Subirade, M. Formation of intermolecular beta-sheet structures: a phenomenon relevant to protein film structure at oil-water interfaces of emulsions J. Colloid Interface Sci. 2003, 263, 59-67
17. Cicuta, P.; Stancik, E. J.; Fuller, G. G. Shearing or compressing a soft glass in 2D: Time-concentration superposition Phys. Rev. Lett. 2003, 90, 236101
18. Cicuta, P. Compression and shear surface rheology in spread layers of beta-casein and beta-lactoglobulin J. Colloid Interface Sci. 2007, 308, 93-9
19. Wierenga, P. A.; Kosters, H.; Egmond, M. R.; Voragen, A. G. J.; de Jongh, H. H. J. Importance of physical vs. chemical interactions in surface shear rheology Adv. Colloid Interface Sci. 2006, 119, 131-9
20. Cicuta, P.; Terentjev, E. M. Viscoelasticity of a protein monolayer from anisotropic surface pressure measurements Eur. Phys. J. E 2005, 16, 147-58
21. Walder, R.; Nelson, N.; Schwartz, D. K. Single molecule observations of desorption-mediated diffusion at the solid-liquid Interface Phys. Rev. Lett. 2011, 15, 156102
22. Lee, M. H.; Reich, D. H.; Stebe, K.J.; Leheny, R. L. Combined passive and active microrheology study of protein-layer formation at an air-water interface Langmuir 2010, 26, 2650-2658
23. Lee, M. H.; Cardinali, S. P.; Reich, D. H.; Stebe, K. J.; Leheny, R. L. Brownian dynamics of colloidal probes during protein-layer formation at an oil-water interface Soft Matter 2011, 7, 7635-7642
24. Allan, D. B.; Firester, D. M.; Allard, V. P.; Reich, D. H.; Stebe, K. J.; Leheny, R. L. Linear and nonlinear microrheology of lysozyme layers forming at the air-water interface Soft Matter 2014, 10, 7051-7060
25. Sollich, P.; Lequeux, F.; Hebraud, P.; Cates, M. E. Rheology of soft glassy materials Phys. Rev. Lett. 1997, 78, 2020-2023
26. Sollich, P. Rheological constitutive equation for a model of soft glassy materials Phys. Rev. E 1998, 58, 738-759
27. Euston, S. R.; Hughes, P.; Naser, M. A.; Westacott, R. E. Molecular Dynamics Simulation of the Cooperative Adsorption of Barley Lipid Transfer Protein and cis-Isocohumulone at the Vacuum-Water Interface Biomacromolecules 2008, 9, 1443-1453
28. Cheung, D. L. Molecular Simulation of Hydrophobin Adsorption at an Oil-Water Interface Langmuir 2012, 28, 8730-8736
29. Cieplak, M.; Hoang, T. X. Universality classes in folding times of proteins Biophys. J. 2003, 84, 475-488
30. Cieplak, M.; Hoang, T. X.; Robbins, M. O. Thermal effects in stretching of Go-like models of titin and secondary structures Proteins: Struct., Funct., Bioinf. 2004, 56, 285-297
31. Go, N. Theoretical studies of protein folding Annu. Rev. Biophys. Bioeng. 1983, 12, 183-210
32. Lu, J. R.; Su, T. J.; Thomas, R. K.; Penfold, J.; Webster, J. Structural conformation of lysozyme layers at the air/water interface studied by neutron reflection J. Chem. Soc., Faraday Trans. 1998, 94, 3279-3287
33. Lu, J. R.; Su, T. J.; Howlin, B. J. The effect of solution pH on the structural conformation of lysozyme layers adsorbed on the surface of water J. Phys. Chem. B 1999, 103, 5903-5909
34. Yano, Y. F.; Uruga, T.; Tanida, H.; Toyokawa, H.; Terada, Y.; Takagaki, M.; Yamada, H. Driving Force Behind Adsorption-Induced Protein Unfolding: A Time-Resolved X-ray Reflectivity Study on Lysozyme Adsorbed at an Air/Water Interface Langmuir 2009, 25, 32-35
35. Postel, C.; Abillon, O.; Desbat, B. Structure and denaturation of adsorbed lysozyme at the air-water interface J. Colloid Interface Sci. 2003, 266, 74-81
36. Lad, M. D.; Birembaut, F.; Matthew, J.M.; Frazier, R. A.; Green, R. J. The adsorbed conformation of globular proteins at the air/water interface Phys. Chem. Chem. Phys. 2006, 8, 2179-2186
37. Roberts, S. A.; Kellaway, I. W.; Taylor, K. M. G.; Warburton, B.; Peters, K. Combined surface pressure-interfacial shear rheology study of the effect of pH on the adsorption of proteins at the air-water interface Langmuir 2005, 21, 7342-7348
38. Malcolm, A. S.; Dexter, A. F.; Middelberg, A. P. J. Mechanical properties of interfacial films formed by lysozyme self-assembly at the air-water interface Langmuir 2006, 22, 8897-8905
39. Hakanpaa, J.; Szilvay, G. R.; Kaljunen, H.; Maksimainen, M.; Linder, M.; Rouvinen, J. Two crystal structures of Trichopderma reesei hydrophobin HFBI-The structure of a protein amphiphile with and without detergent interactions Protein Sci. 2006, 15, 2129-2140
40. Wang, Y.; Bouillon, C.; Cox, A.; Dickinson, E.; Durga, K.; Murray, B. S. Interfacial study of class II hydrophobin and its mixtures with milk proteins: Relationship to bubble stability J. Agric. Food Chem. 2013, 61, 1554-1562
41. Sułkowska, J. I.; Cieplak, M. Mechanical stretching of proteins-a theoretical survey of the Protein Data Bank J. Phys.: Condens. Mater. 2007, 19, 283201
42. Sułkowska, J. I.; Cieplak, M. Selection of optimal variants of Go-like models of proteins through studies of stretching Biophys. J. 2008, 95, 3174-3191
43. Grest, G. S.; Kremer, K. Molecular dynamics simulation for polymers in the presence of a heat bath Phys. Rev. A 1986, 33, 3628-31
44. Tsai, J.; Taylor, R.; Chothia, C.; Gerstein, M. The packing density in proteins: Standard radii and volumes J. Mol. Biol. 1999, 290, 253-266
45. Sikora, M.; Sulkowska, J. I.; Cieplak, M. Mechanical strength of 17 134 model proteins and cysteine slipknopts PloS Comp. Biol. 2009, 5, e1000547
46. Wojciechowski, M.; Cieplak, M. Effects of confinement and crowding on folding of model proteins Biosystems 2008, 94, 248-252
47. Kyte, J.; Doolittle, R. F. A simple method for displaying the hydropathic character of a protein J. Mol. Biol. 1982, 157, 105-32
48. Palliser, C. C.; Parry, D. A. D. Quantitative comparison of the ability of hydropathy scales to recognize surface β-strands in proteins Proteins: Struct., Funct., Genet. 2001, 42, 243-255
49. Kabsch, W. A solution for the best rotation to relate two sets of vectors Acta Crystallogr. 1976, 32, 922-923
50. Sikora, M.; Szymczak, P.; Thompson, D.; Cieplak, M. Linker-mediated assembly of gold nanoparticles into multimeric motifs Nanotechnology 2011, 22, 445601
51. Starzyk, A.; Cieplak, M. Denaturation of proteins near polar surfaces J. Chem. Phys. 2011, 135, 235103
52. Eisenberg, D.; Weiss, R. M.; Terwilliger, T. C. The helical hydrophobic moment: a measure of the amphiphilicity of a helix Nature 1982, 299, 371-374
53. Eisenberg, D.; Weiss, R. M.; Terwilliger, T. C.; Wilcox, W. Hydrophobic moments and protein structure Farday Symp. Chem. Soc. 1982, 17, 109-120
54. Worch, R. The helical hairpin structure of the influenza fusion peptide can be seen on a hydrophobic moment map FEBS Lett. 2013, 587, 2980-2983
55. Angell, C. A.; Ngai, K. L.; McKenna, G. B.; McMillan, P. F.; Martin, S. W. Relaxation in glassforming liquids and amorphous solids J. Appl. Phys. 2000, 88, 3113-3157
56. Lindsay, H. M.; Chaikin, P. M. Elastic properties of colloidal crystals and glasses J. Chem. Phys. 1982, 76, 3774-3781
57. Mattsson, J.; Wyss, H. M.; Fernandez-Niewves, A.; Miyazaki, K.; Hu, Z.; Reichmann, D. R.; Weitz, D. A. Soft colloids make strong glasses Nature 2009, 462, 83-86
58. Brambilla, G.; El Masri, D.; Oierno, M.; Berthier, L.; Cipelletti, L.; Petekidis, G.; Schofield, A. B. Probing the equilibrium dynamics of colloidal hard spheres above the mode-coupling glass transition Phys. Rev. Lett. 2009, 102, 085703