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Journal of Chemical Physics

Volumn 135, Issue 23, 2011, Pages

Denaturation of proteins near polar surfaces

(2) Starzyk, Anna a Cieplak, Marek a

a INSTITUTE OF PHYSICS (Poland)

Author keywords

[No Author keywords available]

Indexed keywords

COULOMBIC INTERACTIONS; DISTORTION PARAMETERS; DISULFIDE BONDS; HYDROPHOBINS; LYZOZYMES; MICA SURFACES; MOLECULAR DYNAMICS SIMULATIONS; NET CHARGES; PLANAR SHAPE; POLAR SURFACES; PROTEIN G; RADIUS OF GYRATION; SINGLE SITES;

AMINO ACIDS; COMPUTER SIMULATION; COVALENT BONDS; DEFORMATION; MICA; MOLECULAR DYNAMICS;

PROTEINS;

ALUMINUM SILICATE; BACTERIAL PROTEIN; IGG FC BINDING PROTEIN, STREPTOCOCCUS; IGG FC-BINDING PROTEIN, STREPTOCOCCUS; LYSOZYME; MICA; PROTEIN;

ARTICLE; CHEMISTRY; MOLECULAR DYNAMICS; PROTEIN CONFORMATION; PROTEIN DENATURATION; SURFACE PROPERTY;

ALUMINUM SILICATES; BACTERIAL PROTEINS; MOLECULAR DYNAMICS SIMULATION; MURAMIDASE; PROTEIN CONFORMATION; PROTEIN DENATURATION; PROTEINS; SURFACE PROPERTIES;

EID: 84555202603 PISSN: 00219606 EISSN: None Source Type: Journal
DOI: 10.1063/1.3665930 Document Type: Article

Times cited : (20)

References (44)

1
- 1342302795
- 10.1016/j.sbi.2003.12.001
- J. J. Gray, Curr. Opin. Struct. Biol. 14, 110 (2004). 10.1016/j.sbi.2003.12.001
- (2004) Curr. Opin. Struct. Biol. , vol.14 , pp. 110
- Gray, J.J.¹

2
- 33747192713
- 10.1002/anie.199201531
- L. Addadi and S. Weiner, Angew. Chem., Int. Ed. Engl. 31, 153 (1992). 10.1002/anie.199201531
- (1992) Angew. Chem., Int. Ed. Engl. , vol.31 , pp. 153
- Addadi, L.¹ Weiner, S.²

3
- 0027641056
- 10.1002/jbm.820270816
- D. J. Iuliano, S. S. Saavedra, and G. A. Truskey, J. Biomed. Matter. Res. 27, 1103 (1993). 10.1002/jbm.820270816
- (1993) J. Biomed. Matter. Res. , vol.27 , pp. 1103
- Iuliano, D.J.¹ Saavedra, S.S.² Truskey, G.A.³

4
- 9144257407
- 10.1021/cr950260c
- Y. Yeh and R. E. Feeney, Chem. Rev. 96, 601 (1996). 10.1021/cr950260c
- (1996) Chem. Rev. , vol.96 , pp. 601
- Yeh, Y.¹ Feeney, R.E.²

5
- 0035060814
- 10.1263/jbb.91.233
- K. Nakanishi, T. Sakiyama, and K. Imamura, J. Biosci. Bioeng. 91, 233 (2001). 10.1263/jbb.91.233
- (2001) J. Biosci. Bioeng. , vol.91 , pp. 233
- Nakanishi, K.¹ Sakiyama, T.² Imamura, K.³

6
- 0030000062
- 10.1146/annurev.bb.25.060196.000415
- M. Mrksich and G. M. Whitesides, Ann. Rev. Biophys. Biomol. Struct. 25, 55 (1996). 10.1146/annurev.bb.25.060196.000415
- (1996) Ann. Rev. Biophys. Biomol. Struct. , vol.25 , pp. 55
- Mrksich, M.¹ Whitesides, G.M.²

7
- 0742321804
- 10.1021/cr030698+
- M-C. Daniel and D. Astruc, Chem. Rev. 104, 293 (1998). 10.1021/cr030698+
- (1998) Chem. Rev. , vol.104 , pp. 293
- Daniel, M.-C.¹ Astruc, D.²

8
- 0001495463
- 10.1021/cm970702w
- J. Fink, C. J. Kiely, D. Bethell, and D. J. Schiffrin, Chem. Mat. 10, 922 (1998). 10.1021/cm970702w
- (1998) Chem. Mat. , vol.10 , pp. 922
- Fink, J.¹ Kiely, C.J.² Bethell, D.³ Schiffrin, D.J.⁴

9
- 47149102751
- 10.1088/1367-2630/10/6/065019
- J. Liao, M. Mangold, S. Grunder, and M. Mayor, New J. Phys. 10, 065019 (2008). 10.1088/1367-2630/10/6/065019
- (2008) New J. Phys. , vol.10 , pp. 065019
- Liao, J.¹ Mangold, M.² Grunder, S.³ Mayor, M.⁴

10
- 14044279957
- 10.1073/pnas.0409336102
- D. G. Georganopoulou, L. Chang, J-M. Nam, C. S. Thaxton, and E. J. Mufson, Proc. Natl. Acad. Sci. U.S.A. 102, 2273 (2005). 10.1073/pnas.0409336102
- (2005) Proc. Natl. Acad. Sci. U.S.A. , vol.102 , pp. 2273
- Georganopoulou, D.G.¹ Chang, L.² Nam, J.-M.³ Thaxton, C.S.⁴ Mufson, E.J.⁵

11
- 77953183768
- M. Hoefling, F. Iori, S. Corni, and K. E. Gottschalk, ChemPhysChem. 11, 1763 (2010).
- (2010) ChemPhysChem. , vol.11 , pp. 1763
- Hoefling, M.¹ Iori, F.² Corni, S.³ Gottschalk, K.E.⁴

12
- 77954562476
- 10.1021/la904765u
- M. Hoefling, F. Iori, S. Corni, and K. E. Gottschalk, Langmuir 26, 8347 (2010). 10.1021/la904765u
- (2010) Langmuir , vol.26 , pp. 8347
- Hoefling, M.¹ Iori, F.² Corni, S.³ Gottschalk, K.E.⁴

13
- 0036392715
- 10.1163/156856202760197384
- R. Braun, M. Sarikaya, and K. Schulten, J. Biomater. Sci. Polym. Ed. 13, 747 (2002). 10.1163/156856202760197384
- (2002) J. Biomater. Sci. Polym. Ed. , vol.13 , pp. 747
- Braun, R.¹ Sarikaya, M.² Schulten, K.³

14
- 0030969778
- 10.1038/nbt0397-269
- S. Brown, Nat. Biotechnol. 15, 269 (1997). 10.1038/nbt0397-269
- (1997) Nat. Biotechnol. , vol.15 , pp. 269
- Brown, S.¹

15
- 23144455709
- 10.1021/la050261s
- B. R. Peelle, E. M. Krauland, K. D. Wittrup, and A. M. Belcher, Langmuir 21, 6929 (2005). 10.1021/la050261s
- (2005) Langmuir , vol.21 , pp. 6929
- Peelle, B.R.¹ Krauland, E.M.² Wittrup, K.D.³ Belcher, A.M.⁴

16
- 33749993224
- 10.1002/smll.200600070
- C. Tamerler, M. Duman, E. Oren, M. Gungormus, X. Xiong, T. Kacar, B. A. Parviz, and M. Sarikaya, Small 2, 1372 (2006). 10.1002/smll.200600070
- (2006) Small , vol.2 , pp. 1372
- Tamerler, C.¹ Duman, M.² Oren, E.³ Gungormus, M.⁴ Xiong, X.⁵ Kacar, T.⁶ Parviz, B.A.⁷ Sarikaya, M.⁸

17
- 54949129779
- 10.1002/pssb.200879541
- H. J. Lewerenz, Phys. Stat. Sol. B 245, 1884 (2008). 10.1002/pssb. 200879541
- (2008) Phys. Stat. Sol. B , vol.245 , pp. 1884
- Lewerenz, H.J.¹

18
- 84555179490
- T. A. Do and J. Pleiss, Eur. Cells Mat. 20, 59 (2010).
- (2010) Eur. Cells Mat. , vol.20 , pp. 59
- Do, T.A.¹ Pleiss, J.²

19
- 0344584910
- 10.1021/la035127r
- K. L. Marchin and C. L. Berrie, Langmuir 19, 9883 (2003). 10.1021/la035127r
- (2003) Langmuir , vol.19 , pp. 9883
- Marchin, K.L.¹ Berrie, C.L.²

20
- 0031570659
- 10.1006/jcis.1997.4895
- T. Zoungrana, G. H. Findenegg, and W. Norde, J. Coll. Interf. Sci. 190, 437 (1997). 10.1006/jcis.1997.4895
- (1997) J. Coll. Interf. Sci. , vol.190 , pp. 437
- Zoungrana, T.¹ Findenegg, G.H.² Norde, W.³

21
- 0004010214
- (Oxford Univeristy Press, London)
- N. K. Adam, The Physics and Chemistry of Surfaces (Oxford Univeristy Press, London, 1941).
- (1941) The Physics and Chemistry of Surfaces
- Adam, N.K.¹

22
- 68649113383
- 10.1080/08927020802610288
- P. Mulheran and K. Kubiak, Mol Sim. 35, 561 (2009). 10.1080/ 08927020802610288
- (2009) Mol Sim. , vol.35 , pp. 561
- Mulheran, P.¹ Kubiak, K.²

23
- 69949139818
- 10.1021/jp901521x
- K. Kubiak and P. A. Mulheran, J. Phys. Chem. B 113, 12189 (2009). 10.1021/jp901521x
- (2009) J. Phys. Chem. B , vol.113 , pp. 12189
- Kubiak, K.¹ Mulheran, P.A.²

24
- 3042777690
- 10.1023/B:COLL.0000030843.30563.c9
- M. V. Maslova, L. G. Gerasimova, and W. Forsling, Coll. J. 66, 322 (2004). 10.1023/B:COLL.0000030843.30563.c9
- (2004) Coll. J. , vol.66 , pp. 322
- Maslova, M.V.¹ Gerasimova, L.G.² Forsling, W.³

25
- 3442898466
- 10.1021/jp0495186
- F. Carlsson, E. Hyltner, T. Arnebrant, M. Malmsten, and P. Linse, J. Phys. Chem. B 108, 9871 (2004). 10.1021/jp0495186
- (2004) J. Phys. Chem. B , vol.108 , pp. 9871
- Carlsson, F.¹ Hyltner, E.² Arnebrant, T.³ Malmsten, M.⁴ Linse, P.⁵

26
- 79952316247
- 10.1016/j.jcis.2011.01.009
- Z. Adamczyk, M. Nattich, M. Wasilewska, and M. Sadowska, J. Coll. Inter. Sci. 356, 454 (2011). 10.1016/j.jcis.2011.01.009
- (2011) J. Coll. Inter. Sci. , vol.356 , pp. 454
- Adamczyk, Z.¹ Nattich, M.² Wasilewska, M.³ Sadowska, M.⁴

27
- 65249085557
- 10.1021/jp806667h
- G. C. Qi, Y. L. Yang, H. Yan, L. Guan, Y. B. Li, X. H. Qiu, and C. Wang, J. Phys. Chem. C 113, 204 (2009). 10.1021/jp806667h
- (2009) J. Phys. Chem. C , vol.113 , pp. 204
- Qi, G.C.¹ Yang, Y.L.² Yan, H.³ Guan, L.⁴ Li, Y.B.⁵ Qiu, X.H.⁶ Wang, C.⁷

28
- 27344454932
- 10.1002/jcc.20291
- D. Van der Spoel, E. Lindahl, B. Hess, G. Groenhof, A. E. Mark, and H. J. C. Berendsen, J. Comput. Chem. 26, 1701 (2005). 10.1002/jcc.20291
- (2005) J. Comput. Chem. , vol.26 , pp. 1701
- Van Der Spoel, D.¹ Lindahl, E.² Hess, B.³ Groenhof, G.⁴ Mark, A.E.⁵ Berendsen, H.J.C.⁶

29
- 4444282928
- 10.1002/jcc.20090
- C. Oostenbrink, A. Villa, A. E. Mark, and W. Gunsteren, J. Comput. Chem. 25, 1656 (2004). 10.1002/jcc.20090
- (2004) J. Comput. Chem. , vol.25 , pp. 1656
- Oostenbrink, C.¹ Villa, A.² Mark, A.E.³ Gunsteren, W.⁴

30
- 0002775934
- in, edited by B. Pullman (Reidel, Dordrecht)
- H. J. C. Berendsen, J. P. M. Postma, W. F. van Gunsteren, and J. Hermans, in Intermolecular Forces, edited by, B. Pullman, (Reidel, Dordrecht, 1981), p. 331.
- (1981) Intermolecular Forces , pp. 331
- Berendsen, H.J.C.¹ Postma, J.P.M.² Van Gunsteren, W.F.³ Hermans, J.⁴

31
- 80054931923
- 10.1088/0957-4484/22/44/445601
- M. Sikora, P. Szymczak, D. Thompson, and M. Cieplak, Nanotechnology 22, 445601 (2011). 10.1088/0957-4484/22/44/445601
- (2011) Nanotechnology , vol.22 , pp. 445601
- Sikora, M.¹ Szymczak, P.² Thompson, D.³ Cieplak, M.⁴

32
- 0020997912
- 10.1002/bi360221211
- W. Kabsch and C. Sander, Biopol. 22, 2577 (1983). 10.1002/bip.360221211
- (1983) Biopol. , vol.22 , pp. 2577
- Kabsch, W.¹ Sander, C.²

33
- 63649161362
- 10.1063/1.3050103
- M. Cieplak and S. Niewieczerza, J. Chem. Phys. 130, 124906, (2009). 10.1063/1.3050103
- (2009) J. Chem. Phys. , vol.130 , pp. 124906
- Cieplak, M.¹ Niewieczerza, S.²

34
- 0033516705
- 10.1006/jmbi.1999.2829
- J. Tsai, R. Taylor, C. Chothia, and M. Gerstein, J. Mol. Biol. 290, 253 (1999). 10.1006/jmbi.1999.2829
- (1999) J. Mol. Biol. , vol.290 , pp. 253
- Tsai, J.¹ Taylor, R.² Chothia, C.³ Gerstein, M.⁴

35
- 0037216990
- 10.1016/S0006-3495(03)74867-X
- M. Cieplak and T. X. Hoang, Biophys. J. 84, 475 (2003). 10.1016/S0006-3495(03)74867-X
- (2003) Biophys. J. , vol.84 , pp. 475
- Cieplak, M.¹ Hoang, T.X.²

36
- 3042806394
- 10.1002/prot.20081
- M. Cieplak, T. X. Hoang, and M. O. Robbins, Proteins: Struct., Funct., Bio. 56, 285 (2004). 10.1002/prot.20081
- (2004) Proteins: Struct., Funct., Bio. , vol.56 , pp. 285
- Cieplak, M.¹ Hoang, T.X.² Robbins, M.O.³

37
- 34547673274
- 10.1088/0953-8984/19/28/283201
- J. I. Sukowska and M. Cieplak, J. Phys.: Condens. Matter. 19, 283201 (2007). 10.1088/0953-8984/19/28/283201
- (2007) J. Phys.: Condens. Matter. , vol.19 , pp. 283201
- Sukowska, J.I.¹ Cieplak, M.²

38
- 73549110486
- e. 10.1371/journal.pcbi.1000547
- M. Sikora, J. I. Sukowska, and M. Cieplak, PloS Comp. Biol. 5, e 1000547 (2009). 10.1371/journal.pcbi.1000547
- (2009) PloS Comp. Biol. , vol.5 , pp. 1000547
- Sikora, M.¹ Sukowska, J.I.² Cieplak, M.³

39
- 33645961739
- 10.1063/1.470117
- U. Essmann, L. Perera, M. L. Berkowitz, T. Darden, H. Lee, and L. G. Pedersen, J. Chem. Phys. 103, 8577 (1995). 10.1063/1.470117
- (1995) J. Chem. Phys. , vol.103 , pp. 8577
- Essmann, U.¹ Perera, L.² Berkowitz, M.L.³ Darden, T.⁴ Lee, H.⁵ Pedersen, L.G.⁶

40
- 79955479719
- 10.1002/jcc.21773
- M. J. Abraham and J. E. Gready, J. Comput. Chem. 32, 2031 (2011). 10.1002/jcc.21773
- (2011) J. Comput. Chem. , vol.32 , pp. 2031
- Abraham, M.J.¹ Gready, J.E.²

41
- 0035132493
- 10.1103/PhysRevLett.86.803
- M. Cieplak, J. Koplik, and J. R. Banavar, Phys. Rev. Lett. 86, 803 (2001). 10.1103/PhysRevLett.86.803
- (2001) Phys. Rev. Lett. , vol.86 , pp. 803
- Cieplak, M.¹ Koplik, J.² Banavar, J.R.³

42
- 0033354167
- 10.1016/S0378-4371(99)00308-8
- M. Cieplak, J. Koplik, and J. R. Banavar, Physica A 274, 281 (1999). 10.1016/S0378-4371(99)00308-8
- (1999) Physica A , vol.274 , pp. 281
- Cieplak, M.¹ Koplik, J.² Banavar, J.R.³

43
- 33746064591
- 10.1110/ps.062326706
- J. Hakanpaa, G. R. Szilvay, H. Kaljunen, M. Maksimainen, M. Linder, and J. Rouvinen, Protein Sci. 15, 2129 (2006). 10.1110/ps.062326706
- (2006) Protein Sci. , vol.15 , pp. 2129
- Hakanpaa, J.¹ Szilvay, G.R.² Kaljunen, H.³ Maksimainen, M.⁴ Linder, M.⁵ Rouvinen, J.⁶

44
- 84855722751
- See supplementary material at E-JCPSA6-135-032146 for discussion of (a) the results obtained by using the Particle-Mesh Ewald summation, (b) RMSD distances between deformed and unfolded conformations, (c) influence of the Coulombic cutoff on the single-body fluctuations, (d) properties of two-body fluctuations, and (e) behavior of hydrophobin at non-polar surfaces
- See supplementary material at http://dx.doi.org/10.1063/1.3665930 E-JCPSA6-135-032146 for discussion of (a) the results obtained by using the Particle-Mesh Ewald summation, (b) RMSD distances between deformed and unfolded conformations, (c) influence of the Coulombic cutoff on the single-body fluctuations, (d) properties of two-body fluctuations, and (e) behavior of hydrophobin at non-polar surfaces.

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