New insights into regulation of proteome and polysaccharide in cell wall of Elsholtzia splendensin response to copper stress

PLoS ONE

Volumn 9, Issue 10, 2014, Pages

  Liu, Tingting ^a   Shen, Chaofeng ^a   Wang, Yi ^a   Huang, Canke ^a   Shi, Jiyan ^a  

^a ZHEJIANG UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

COPPER ION; POLYSACCHARIDE; PROTEOME; VEGETABLE PROTEIN; COPPER; ION;

APOPLAST; ARTICLE; BINDING SITE; CELL METABOLISM; CELL WALL; CONTROLLED STUDY; DETOXIFICATION; DOWN REGULATION; ELSHOLTZIA SPLENDENS; ENERGY METABOLISM; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; NONHUMAN; OXIDATIVE STRESS; PHYSICAL TOLERANCE; PLANT; PLANT DEFENSE; PLANT ROOT; PLANT STRESS; PROTEIN FUNCTION; PROTEIN SYNTHESIS; PROTEOMICS; SIGNAL TRANSDUCTION; UPREGULATION; CLUSTER ANALYSIS; CYTOLOGY; DRUG EFFECTS; GENE ONTOLOGY; GENETICS; ISOLATION AND PURIFICATION; LAMIACEAE; METABOLISM; MOLECULAR GENETICS; PHYSIOLOGICAL STRESS; PHYSIOLOGY; TANDEM MASS SPECTROMETRY;

ELSHOLTZIA;

CELL WALL; CHROMATOGRAPHY, LIQUID; CLUSTER ANALYSIS; COPPER; GENE ONTOLOGY; IONS; LAMIACEAE; METABOLIC NETWORKS AND PATHWAYS; MOLECULAR SEQUENCE ANNOTATION; PLANT PROTEINS; PLANT ROOTS; POLYSACCHARIDES; PROTEOME; STRESS, PHYSIOLOGICAL; TANDEM MASS SPECTROMETRY;

EID: 84908575842     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0109573     Document Type: Article

References (77)

1. Maksymiec W (1998) Effect of copper on cellular processes in higher plants. Photosynthetica 34: 321-342.
2. Teisseire H, Guy V (2000) Copper-induced changes in antioxidant enzymes activities in fronds of duckweed (Lemna minor)Plant science 153: 65-72.
3. Vinit-Dunand F, Epron D, Alaoui-Sossé B, Badot PM (2002) Effects of copper on growth and on photosynthesis of mature and expanding leaves in cucumber plants. Plant science 163: 53-58.
4. Bona E, Marsano F, Cavaletto M, Berta G (2007) Proteomic characterization of copper stress response in Cannabis sativa roots. Proteomics 7: 1121-1130.
5. Hall J (2002) Cellular mechanisms for heavy metal detoxification and tolerance. Journal of Experimental Botany 53: 1-11.
6. Cobbett C, Goldsbrough P (2002) Phytochelatins and metallothioneins: roles in heavy metal detoxification and homeostasis. Annual review of plant biology 53: 159-182.
7. Krzesłowska M (2011) The cell wall in plant cell response to trace metals: polysaccharide remodeling and its role in defense strategy. Acta Physiologiae Plantarum 33: 35-51.
8. Jarvis MC (2009) Plant cell walls: supramolecular assembly, signalling and stress. Structural Chemistry 20: 245-253.
9. Zhu J, Chen S, Alvarez S, Asirvatham VS, Schachtman DP, et al. (2006) Cell wall proteome in the maize primary root elongation zone. I. Extraction and identification of water-soluble and lightly ionically bound proteins. Plant physiology 140: 311-325.
10. Vorwerk S, Somerville S, Somerville C (2004) The role of plant cell wall polysaccharide composition in disease resistance. Trends in plant science 9: 203-209.
11. Dani V, Simon WJ, Duranti M, Croy RR (2005) Changes in the tobacco leaf apoplast proteome in response to salt stress. Proteomics 5: 737-745.
12. Soares NC, Francisco R, Vielba JM, Ricardo CP, Jackson PA (2009) Associating wound-related changes in the apoplast proteome of Medicago with early steps in the ROS signal-transduction pathway. Journal of Proteome Research 8: 2298-2309.
13. Jamet E, Canut H, Boudart G, Pont-Lezica RF (2006) Cell wall proteins: a new insight through proteomics. Trends in plant science 11: 33-39.
14. Bhushan D, Pandey A, Choudhary MK, Datta A, Chakraborty S, et al. (2007) Comparative proteomics analysis of differentially expressed proteins in chickpea extracellular matrix during dehydration stress. Molecular & Cellular Proteomics 6: 1868-1884.
15. Pandey A, Rajamani U, Verma J, Subba P, Chakraborty N, et al. (2010) Identification of extracellular matrix proteins of rice (Oryza sativa L.) involved in dehydration-responsive network: a proteomic approach. Journal of Proteome Research 9: 3443-3464.
16. Floerl S, Druebert C, Majcherczyk A, Karlovsky P, Kües U, et al. (2008) Defence reactions in the apoplastic proteome of oilseed rape (Brassica napus var. napus) attenuate Verticillium longisporum growth but not disease symptoms. Bmc Plant Biology 8: 129.
17. Goulet C, Goulet C, Goulet MC, Michaud D (2010) 2-DE proteome maps for the leaf apoplast of Nicotiana benthamiana. Proteomics 10: 2536-2544.
18. Brune A, Urbach W, Dietz K-J (1994) Zinc stress induces changes in apoplasmic protein content and polypeptide composition of barley primary leaves. Journal of Experimental Botany 45: 1189-1196.
19. Blinda A, Koch B, Ramanjulu S, Dietz K (1997) De novo synthesis and accumulation of apoplastic proteins in leaves of heavy metal-exposed barley seedlings. Plant, Cell & Environment 20: 969-981.
20. Fecht-Christoffers MM, Braun H-P, Lemaitre-Guillier C, VanDorsselaer A, Horst WJ (2003) Effect of manganese toxicity on the proteome of the leaf apoplast in cowpea. Plant physiology 133: 1935-1946.
21. Fecht-Christoffers MM, Führs H, Braun H-P, Horst WJ (2006) The role of hydrogen peroxide-producing and hydrogen peroxide-consuming peroxidases in the leaf apoplast of cowpea in manganese tolerance. Plant physiology 140: 1451-1463.
22. Alves M, Francisco R, Martins I, Ricardo C (2006) Analysis of Lupinus albus leaf apoplastic proteins in response to boron deficiency. Plant and Soil 279: 1-11.
23. Komatsu S, Kobayashi Y, Nishizawa K, Nanjo Y, Furukawa K (2010) Comparative proteomics analysis of differentially expressed proteins in soybean cell wall during flooding stress. Amino Acids 39: 1435-1449.
24. Kataoka T, Furukawa J, Nakanishi T (2003) The decrease of extracted apoplast protein in soybean root tip by aluminium treatment. Biologia plantarum 46: 445-449.
25. Kong F-J, Oyanagi A, Komatsu S (2010) Cell wall proteome of wheat roots under flooding stress using gel-based and LC MS/MS-based proteomics approaches. Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1804: 124-136.
26. Zhou L, Bokhari SA, Dong C-J, Liu J-Y (2011) Comparative proteomics analysis of the root apoplasts of rice seedlings in response to hydrogen peroxide. Plos One 6: e16723.
27. Hossain Z, Nouri M-Z, Komatsu S (2011) Plant cell organelle proteomics in response to abiotic stress. Journal of Proteome Research 11: 37-48.
28. Yang MJ, Yang XE, Römheld V (2002) Growth and nutrient composition of Elsholtzia splendens Nakai under copper toxicity. Journal of plant nutrition 25: 1359-1375.
29. Lou L, Shen Z, Li X (2004) The copper tolerance mechanisms of Elsholtzia haichowensis, a plant from copper-enriched soils. Environmental and Experimental Botany 51: 111-120.
30. Feiz L, Irshad M, Pont-Lezica RF, Canut H, Jamet E (2006) Evaluation of cell wall preparations for proteomics: a new procedure for purifying cell walls from Arabidopsis hypocotyls. Plant Methods 2: 10.
31. Kwon H-K, Yokoyama R, Nishitani K (2005) A proteomic approach to apoplastic proteins involved in cell wall regeneration in protoplasts of Arabidopsis suspension-cultured cells. Plant and Cell Physiology 46: 843-857.
32. Harrison S, Lepp N, Phipps D (1979) Uptake of Copper by excised roots II. Copper desorption from the free space. Zeitschrift für Pflanzenphysiologie 94: 27-34.
33. Li F, Shi J, Shen C, Chen G, Hu S, et al. (2009) Proteomic characterization of copper stress response in Elsholtzia splendens roots and leaves. Plant Molecular Biology 71: 251-263.
34. Feiz L, Irshad M, Pont-Lezica RF, Canut H, Jamet E (2006) Evaluation of cell wall preparations for proteomics: a new procedure for purifying cell walls from Arabidopsis hypocotyls. Plant Methods 2.
35. Zhong H, Lauchli A (1993) Changes of cell wall composition and polymer size in primary roots of cotton seedlings under high salinity. Journal of Experimental Botany 44: 773-778.
36. Yu M, Shen R, Liu J, Chen R, Xu M, et al. (2009) The role of root border cells in aluminum resistance of pea (Pisum sativum) grown in mist culture. Journal of Plant Nutrition and Soil Science 172: 528-534.
37. Jamet E, Boudart G, Borderies G, Charmont S, Lafitte C, et al. (2008) Isolation of plant cell wall proteins. 2D PAGE: Sample Preparation and Fractionation: Springer. pp. 187-201.
38. Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Analytical biochemistry 72: 248-254.
39. Dubois M, Gilles KA, Hamilton JK, Rebers P, Smith F (1956) Colorimetric method for determination of sugars and related substances. Analytical chemistry 28: 350-356.
40. Dronnet V, Renard C, Axelos M, Thibault J-F (1996) Heavy metals binding by pectins: selectivity, quantification and characterisation. Progress in Biotechnology 14: 535-540.
41. Mohnen D (2008) Pectin structure and biosynthesis. Current opinion in plant biology 11: 266-277.
42. Ye J, Fang L, Zheng H, Zhang Y, Chen J, et al. (2006) WEGO: a web tool for plotting GO annotations. Nucleic acids research 34: W293-W297.
43. Kanehisa M, Goto S (2000) KEGG: kyoto encyclopedia of genes and genomes. Nucleic acids research 28: 27-30.
44. Day A, Fénart S, Neutelings G, Hawkins S, Rolando C, et al. (2013) Identification of cell wall proteins in the flax (Linum usitatissimum) stem. Proteomics.
45. Xiong J, An L, Lu H, Zhu C (2009) Exogenous nitric oxide enhances cadmium tolerance of rice by increasing pectin and hemicellulose contents in root cell wall. Planta 230: 755-765.
46. Yang JL, Zhu XF, Peng YX, Zheng C, Li GX, et al. (2011) Cell wall hemicellulose contributes significantly to aluminum adsorption and root growth in Arabidopsis. Plant physiology 155: 1885-1892.
47. Pelloux J, Rusterucci C, Mellerowicz EJ (2007) New insights into pectin methylesterase structure and function. Trends in plant science 12: 267-277.
48. Paynel F, Schaumann A, Arkoun M, Douchiche O, Morvan C (2009) Temporal regulation of cell-wall pectin methylesterase and peroxidase isoforms in cadmium-treated flax hypocotyl. Annals of Botany 104: 1363-1372.
49. Liszkay A, Kenk B, Schopfer P (2003) Evidence for the involvement of cell wall peroxidase in the generation of hydroxyl radicals mediating extension growth. Planta 217: 658-667.
50. Fry S, Dumville J, Miller J (2001) Fingerprinting of polysaccharides attacked by hydroxyl radicals in vitro and in the cell walls of ripening pear fruit. Biochem J 357: 729-737.
51. Thounaojam TC, Panda P, Mazumdar P, Kumar D, Sharma G, et al. (2012) Excess copper induced oxidative stress and response of antioxidants in rice. Plant Physiology and Biochemistry 53: 33-39.
52. Ahsan N, Lee D-G, Lee S-H, Kang KY, Lee JJ, et al. (2007) Excess copper induced physiological and proteomic changes in germinating rice seeds. Chemosphere 67: 1182-1193.
53. Spain JC, Wyss O, Gibson DT (1979) Enzymatic oxidation of p-nitrophenol. Biochemical and Biophysical Research Communications 88: 634-641.
54. Gross GG (1977) Cell wall-bound malate dehydrogenase from horseradish. Phytochemistry 16: 319-321.
55. Li Z-C, McClure JW, Hagerman AE (1989) Soluble and bound apoplastic activity for peroxidase, β-D-glucosidase, malate dehydrogenase, and nonspecific arylesterase, in barley (Hordeum vulgare L.) and oat (Avena sativa L.) primary leaves. Plant physiology 90: 185-190.
56. Apel K, Hirt H (2004) Reactive oxygen species: metabolism, oxidative stress, and signal transduction. Annu Rev Plant Biol 55: 373-399.
57. Jensen KA, Houtman CJ, Ryan ZC, Hammel KE (2001) Pathways for extracellular Fenton chemistry in the brown rot basidiomycete Gloeophyllum trabeum. Applied and Environmental Microbiology 67: 2705-2711.
58. Howard L, Talcott S, Brenes C, Villalon B (2000) Changes in phytochemical and antioxidant activity of selected pepper cultivars (Capsicum species) as influenced by maturity. Journal of Agricultural and Food Chemistry 48: 1713-1720.
59. Keith B, Dong X, Ausubel FM, Fink GR (1991) Differential induction of 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase genes in Arabidopsis thaliana by wounding and pathogenic attack. Proceedings of the National Academy of Sciences 88: 8821-8825.
60. Timperio AM, Egidi MG, Zolla L (2008) Proteomics applied on plant abiotic stresses: role of heat shock proteins (HSP). Journal of proteomics 71: 391-411.
61. Wang SB, Hu Q, Sommerfeld M, Chen F (2004) Cell wall proteomics of the green alga Haematococcus pluvialis (Chlorophyceae). Proteomics 4: 692-708.
62. Béguin P, Nagashima K, Gonoi T, Shibasaki T, Takahashi K, et al. (2001) Regulation of Ca2+ channel expression at the cell surface by the small G-protein kir/Gem. Nature 411: 701-706.
63. Rittinger K, Walker PA, Eccleston JF, Nurmahomed K, Owen D, et al. (1997) Crystal structure of a small G protein in complex with the GTPase-activating protein rhoGAP. Nature 388: 693-697.
64. Hall A (1994) Small GTP-binding proteins and the regulation of the actin cytoskeleton. Annual review of cell biology 10: 31-54.
65. Watson BS, Lei Z, Dixon RA, Sumner LW (2004) Proteomics of Medicago sativa cell walls. Phytochemistry 65: 1709-1720.
66. Zhang H, Lian C, Shen Z (2009) Proteomic identification of small, copper-responsive proteins in germinating embryos of Oryza sativa. Annals of Botany 103: 923-930.
67. Odou M, Singer E, Romond M, Dubreuil L (1998) Isolation and characterization of a porin-like protein of 45 kilodaltons from Bacteroides fragilis. Fems Microbiology Letters 166: 347-354.
68. Massari P, Ho Y, Wetzler LM (2000) Neisseria meningitidis porin PorB interacts with mitochondria and protects cells from apoptosis. Proceedings of the National Academy of Sciences 97: 9070-9075.
69. Chivasa S, Ndimba BK, Simon WJ, Lindsey K, Slabas AR (2005) Extracellular ATP functions as an endogenous external metabolite regulating plant cell viability. The Plant Cell Online 17: 3019-3034.
70. Carafoli E, Lim D (2009) Plasma Membrane Calcium ATPase. Handbook of Neurochemistry and Molecular Neurobiology: Springer. pp. 581-596.
71. Nelson H, Nelson N (1990) Disruption of genes encoding subunits of yeast vacuolar H (+)-ATPase causes conditional lethality. Proceedings of the National Academy of Sciences 87: 3503-3507.
72. Sze H, Ward JM, Lai S (1992) Vacuolar H+-translocating ATPases from plants: structure, function, and isoforms. Journal of bioenergetics and biomembranes 24: 371-381.
73. Petersen J, Brinkmann H, Cerff R (2003) Origin, evolution, and metabolic role of a novel glycolytic GAPDH enzyme recruited by land plant plastids. Journal of molecular evolution 57: 16-26.
74. Sharma SS, Dietz K-J (2006) The significance of amino acids and amino acid-derived molecules in plant responses and adaptation to heavy metal stress. Journal of Experimental Botany 57: 711-726.
75. Imin N, Kerim T, Rolfe BG, Weinman JJ (2004) Effect of early cold stress on the maturation of rice anthers. Proteomics 4: 1873-1882.
76. Qu Z-L, Zhong N-Q, Wang H-Y, Chen A-P, Jian G-L, et al. (2006) Ectopic expression of the cotton non-symbiotic hemoglobin gene GhHbd1 triggers defense responses and increases disease tolerance in Arabidopsis. Plant and Cell Physiology 47: 1058-1068.
77. Zhou X, Li J, Cheng W, Liu H, Li M, et al. (2010) Gene structure analysis of rice ADP-ribosylation factors (OsARFs) and their mRNA expression in developing rice plants. Plant Molecular Biology Reporter 28: 692-703.