-
1
-
-
0035848705
-
Reverse phase protein microar-rays which capture disease progression show activation of prosurvival pathways at the cancer invasion front
-
Paweletz CP, Charboneau L, Bichsel VE, et al. Reverse phase protein microar-rays which capture disease progression show activation of prosurvival pathways at the cancer invasion front. Oncogene. 2001;20(16):1981–89.
-
(2001)
Oncogene
, vol.20
, Issue.16
, pp. 1981-1989
-
-
Paweletz, C.P.1
Charboneau, L.2
Bichsel, V.E.3
-
2
-
-
33750456480
-
Reverse phase protein array: Validation of a novel proteomic technology and utility for analysis of primary leukemia specimens and hematopoietic stem cells
-
Tibes R, Qiu Y, Lu Y, et al. Reverse phase protein array: validation of a novel proteomic technology and utility for analysis of primary leukemia specimens and hematopoietic stem cells. Mol Cancer Ter. 2006;5:2512–21.
-
(2006)
Mol Cancer Ter
, vol.5
, pp. 2512-2521
-
-
Tibes, R.1
Qiu, Y.2
Lu, Y.3
-
3
-
-
65649132676
-
Expression of autotaxin and lysophos-phatidic acid receptors increases mammary tumorigenesis, invasion, and metas-tases
-
Liu S, Umezu-Goto M, Murph M, et al. Expression of autotaxin and lysophos-phatidic acid receptors increases mammary tumorigenesis, invasion, and metas-tases. Cancer Cell. 2009;15:539–50.
-
(2009)
Cancer Cell
, vol.15
, pp. 539-550
-
-
Liu, S.1
Umezu-Goto, M.2
Murph, M.3
-
4
-
-
77952240870
-
Gene and protein expression markers of response to combined antiangiogenic and epidermal growth factor targeted therapy in renal cell carcinoma
-
Tsavachidou-Fenner D, Tannir N, Tamboli P, et al. Gene and protein expression markers of response to combined antiangiogenic and epidermal growth factor targeted therapy in renal cell carcinoma. Ann Oncol. 2010;21(8):1599–606.
-
(2010)
Ann Oncol
, vol.21
, Issue.8
, pp. 1599-1606
-
-
Tsavachidou-Fenner, D.1
Tannir, N.2
Tamboli, P.3
-
5
-
-
78649694411
-
A technical assessment of the utility of reverse phase protein arrays for the study of the functional proteome in non-microdissected human breast cancers
-
Hennessy BT, Lu Y, Gonzalez-Angulo AM, et al. A technical assessment of the utility of reverse phase protein arrays for the study of the functional proteome in non-microdissected human breast cancers. Clin Proteomics. 2010;6:129–51.
-
(2010)
Clin Proteomics
, vol.6
, pp. 129-151
-
-
Hennessy, B.T.1
Lu, Y.2
Gonzalez-Angulo, A.M.3
-
6
-
-
84877028141
-
Comprehensive molecular portraits of human breast tumors
-
The Cancer Genome Atlas Network. Comprehensive molecular portraits of human breast tumors. Nature. 2012;490:61–70.
-
(2012)
Nature
, vol.490
, pp. 61-70
-
-
-
7
-
-
84858268381
-
Functional proteomics can defne prognosis and predict pathologic complete response in patients with breast cancer
-
Gonzalez-Angulo AM, Hennessy BT, Meric-Bernstam F, et al. Functional proteomics can defne prognosis and predict pathologic complete response in patients with breast cancer. Clin. Proteomics. 2011;8(1):11.
-
(2011)
Clin. Proteomics.
, vol.8
, Issue.1
, pp. 11
-
-
Gonzalez-Angulo, A.M.1
Hennessy, B.T.2
Meric-Bernstam, F.3
-
8
-
-
84887083535
-
TCPA: A resource for cancer functional proteomics data
-
Li J, Lu Y, Akbani R, et al. TCPA: a resource for cancer functional proteomics data. Nat Methods. 2013;10(11):1046–7.
-
(2013)
Nat Methods
, vol.10
, Issue.11
, pp. 1046-1047
-
-
Li, J.1
Lu, Y.2
Akbani, R.3
-
9
-
-
0036376993
-
Statistical methods for identifying diferentially expressed genes in replicated cDNA microarray experiments
-
Dudoit S, Yang YH, Callow MJ, Speed TP. Statistical methods for identifying diferentially expressed genes in replicated cDNA microarray experiments. Stat Sin. 2002;12(1):111–39.
-
(2002)
Stat Sin
, vol.12
, Issue.1
, pp. 111-139
-
-
Dudoit, S.1
Yang, Y.H.2
Callow, M.J.3
Speed, T.P.4
-
10
-
-
34548141874
-
Non-parametric quantifcation of protein lysate arrays
-
Hu J, He X, Baggerly KA, Coombes KR, Hennessy BT, Mills GB. Non-parametric quantifcation of protein lysate arrays. Bioinformatics. 2007;23(15):1986–94.
-
(2007)
Bioinformatics
, vol.23
, Issue.15
, pp. 1986-1994
-
-
Hu, J.1
He, X.2
Baggerly, K.A.3
Coombes, K.R.4
Hennessy, B.T.5
Mills, G.B.6
-
11
-
-
84860796308
-
Surface adjustment of reverse phase protein arrays using positive control spots
-
Neeley ES, Kornbalu SM, Baggery KA. Surface adjustment of reverse phase protein arrays using positive control spots. Cancer Inform. 2011;11:77–86.
-
(2011)
Cancer Inform
, vol.11
, pp. 77-86
-
-
Neeley, E.S.1
Kornbalu, S.M.2
Baggery, K.A.3
-
12
-
-
65649083714
-
Variable slope normalization of reverse phase protein arrays
-
Neeley ES, Kornblau SM, Coombes KR, Baggerly KA. Variable slope normalization of reverse phase protein arrays. Bioinformatics. 2009;25(11):1384–9.
-
(2009)
Bioinformatics
, vol.25
, Issue.11
, pp. 1384-1389
-
-
Neeley, E.S.1
Kornblau, S.M.2
Coombes, K.R.3
Baggerly, K.A.4
-
13
-
-
0035793042
-
Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
-
Li C, Wong WH. Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proc Natl Acad Sci USA. 2001;98:31–6.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 31-36
-
-
Li, C.1
Wong, W.H.2
-
14
-
-
60849121405
-
Global rank-invariant set normalization (GRSN) to reduce systematic distortions in microarray data
-
Pelz CR, Kuesz-Martin M, Bagby G, Sears RC. Global rank-invariant set normalization (GRSN) to reduce systematic distortions in microarray data. BMC Bioinformatics. 2008;9:520.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 520
-
-
Pelz, C.R.1
Kuesz-Martin, M.2
Bagby, G.3
Sears, R.C.4
-
15
-
-
84863010016
-
NormaCurve: A Supercurve-based method that simultaneously quantifes and normalizes reverse phase protein array data
-
Troncale S, Barbet A, Coulibaly L, et al. NormaCurve: a Supercurve-based method that simultaneously quantifes and normalizes reverse phase protein array data. PLoS One. 2012;7(6):e38686.
-
(2012)
PLoS One
, vol.7
, Issue.6
, pp. e38686
-
-
Troncale, S.1
Barbet, A.2
Coulibaly, L.3
-
16
-
-
68349112682
-
Statistical methods for analysis of high-throughput RNA interference screens
-
Birmingham A, Selfors LM, Forster T, et al. Statistical methods for analysis of high-throughput RNA interference screens. Nature Methods. 2009;6:569–75.
-
(2009)
Nature Methods
, vol.6
, pp. 569-575
-
-
Birmingham, A.1
Selfors, L.M.2
Forster, T.3
-
17
-
-
3242708140
-
Tibshirani R. “Least Angle Regression” (with discussion)
-
Efron B, Hastie T, Johnstone I, Tibshirani R. “Least Angle Regression” (with discussion). Ann Stat. 2004;32(2):407–99.
-
(2004)
Ann Stat
, vol.32
, Issue.2
, pp. 407-499
-
-
Efron, B.1
Hastie, T.2
Johnstone, I.3
-
19
-
-
84866324536
-
Proteomic profling identifes dysregu-lated pathways in small cell lung cancer and novel therapeutic targets including PARP1
-
Byers LA, Wang J, Nilsson MB, et al. Proteomic profling identifes dysregu-lated pathways in small cell lung cancer and novel therapeutic targets including PARP1. Cancer Discovery. 2012;2:798–811.
-
(2012)
Cancer Discovery
, vol.2
, pp. 798-811
-
-
Byers, L.A.1
Wang, J.2
Nilsson, M.B.3
-
20
-
-
33744461054
-
Nonlinear modeling of protein expressions in protein arrays
-
Tabus I, Hategan A, Mircean C, et al. Nonlinear modeling of protein expressions in protein arrays. IEEE Trans Signal Process. 2006;54:2394–407.
-
(2006)
IEEE Trans Signal Process
, vol.54
, pp. 2394-2407
-
-
Tabus, I.1
Hategan, A.2
Mircean, C.3
-
21
-
-
0024521543
-
A concordance correlation coefcient to evaluate reproducibility
-
Lin L. A concordance correlation coefcient to evaluate reproducibility. Biometrics. 1989;45:255–68.
-
(1989)
Biometrics
, vol.45
, pp. 255-268
-
-
Lin, L.1
|