메뉴 건너뛰기




Volumn 23, Issue 15, 2007, Pages 1986-1994

Non-parametric quantification of protein lysate arrays

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN HYDROLYSATE;

EID: 34548141874     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btm283     Document Type: Article
Times cited : (179)

References (40)
  • 1
    • 34047174559 scopus 로고    scopus 로고
    • A module of negative feedback regulators defines growth factor signaling
    • Amit,I. et al. (2006) A module of negative feedback regulators defines growth factor signaling. Nat. Genet., 39, 503-512.
    • (2006) Nat. Genet , vol.39 , pp. 503-512
    • Amit, I.1
  • 2
    • 0001442091 scopus 로고
    • Simulated power functions
    • Beran,R. (1986) Simulated power functions. Ann. Stat., 14, 151-173.
    • (1986) Ann. Stat , vol.14 , pp. 151-173
    • Beran, R.1
  • 3
    • 1842852977 scopus 로고    scopus 로고
    • Methods in functional proteomics: Two-dimensional polyacrylamide gel electrophoresis with immobilized PH gradients, in-gel digestion and identification of proteins by mass spectrometry
    • Bernard,K.R. et al. (2004) Methods in functional proteomics: two-dimensional polyacrylamide gel electrophoresis with immobilized PH gradients, in-gel digestion and identification of proteins by mass spectrometry. Method Mol. Biol., 250, 263-282.
    • (2004) Method Mol. Biol , vol.250 , pp. 263-282
    • Bernard, K.R.1
  • 5
    • 0034535382 scopus 로고    scopus 로고
    • Validation of tissue microarray technology in breast carcinoma
    • Camp,R.L. et al. (2000) Validation of tissue microarray technology in breast carcinoma. Lab. Invest., 80, 1943-1949.
    • (2000) Lab. Invest , vol.80 , pp. 1943-1949
    • Camp, R.L.1
  • 6
    • 11144256544 scopus 로고    scopus 로고
    • Protein microarrays for multiplex analysis of signal transduction pathways
    • Chan,S.M. et al. (2004) Protein microarrays for multiplex analysis of signal transduction pathways. Nat. Med., 10, 1390-1396.
    • (2004) Nat. Med , vol.10 , pp. 1390-1396
    • Chan, S.M.1
  • 7
    • 32444446461 scopus 로고    scopus 로고
    • Assay of Rab25 function in ovarian and breast cancers
    • Cheng,K.W. et al. (2005) Assay of Rab25 function in ovarian and breast cancers. Method Enzymol., 403, 202-215.
    • (2005) Method Enzymol , vol.403 , pp. 202-215
    • Cheng, K.W.1
  • 8
    • 0031053586 scopus 로고    scopus 로고
    • Regulation of neuronal survival by the serine-threonine protein kinase Akt
    • Dudek,H. et al. (1997) Regulation of neuronal survival by the serine-threonine protein kinase Akt. Science, 275, 661-663.
    • (1997) Science , vol.275 , pp. 661-663
    • Dudek, H.1
  • 9
    • 0242692392 scopus 로고    scopus 로고
    • Protein microarrays: Molecular profiling technologies for clinical specimens
    • Espina,V. et al. (2003) Protein microarrays: Molecular profiling technologies for clinical specimens. Proteomics, 3, 2091-2100.
    • (2003) Proteomics , vol.3 , pp. 2091-2100
    • Espina, V.1
  • 10
    • 3142714383 scopus 로고    scopus 로고
    • Protein microarray detection strategies: Focus on direct detection technologies
    • Espina,V. et al. (2004) Protein microarray detection strategies: focus on direct detection technologies. J. Immunol. Methods, 290, 121-133.
    • (2004) J. Immunol. Methods , vol.290 , pp. 121-133
    • Espina, V.1
  • 11
    • 0033412156 scopus 로고    scopus 로고
    • COBS: Qualitatively constrained smoothing via linear program
    • He,X. and Ng,P. (1999) COBS: Qualitatively constrained smoothing via linear program. Comput. Stat., 14, 315-337.
    • (1999) Comput. Stat , vol.14 , pp. 315-337
    • He, X.1    Ng, P.2
  • 12
    • 0032390646 scopus 로고    scopus 로고
    • Monotone B-spline smoothing
    • He,X and Shi,P.D. (1998) Monotone B-spline smoothing. J. Am. Stat. Assoc., 93, 643-650.
    • (1998) J. Am. Stat. Assoc , vol.93 , pp. 643-650
    • He, X.1    Shi, P.D.2
  • 13
    • 12444342982 scopus 로고    scopus 로고
    • Mitochondrial proteome: Altered cytochrome c oxidase subunit levels in prostate cancer
    • Herrmann,P.C. et al. (2003) Mitochondrial proteome: Altered cytochrome c oxidase subunit levels in prostate cancer. Proteomics 3, 1801-1810.
    • (2003) Proteomics , vol.3 , pp. 1801-1810
    • Herrmann, P.C.1
  • 14
    • 0038576291 scopus 로고    scopus 로고
    • Proteome analysis reveals phosphorylation of ATP synthase beta-subunit in human skeletal muscle and proteins with potential roles in type 2 diabetes
    • Hojlund,K. et al. (2003) Proteome analysis reveals phosphorylation of ATP synthase beta-subunit in human skeletal muscle and proteins with potential roles in type 2 diabetes. J. Biol. Chem., 278, 10436-10442.
    • (2003) J. Biol. Chem , vol.278 , pp. 10436-10442
    • Hojlund, K.1
  • 15
    • 4444260067 scopus 로고    scopus 로고
    • Antibodies immobilized as arrays to profile protein post-translational modifications in mammalian cells
    • Ivanov,S.S. et al. (2004) Antibodies immobilized as arrays to profile protein post-translational modifications in mammalian cells. Mol. Cell Proteomics, 3, 788-795.
    • (2004) Mol. Cell Proteomics , vol.3 , pp. 788-795
    • Ivanov, S.S.1
  • 16
    • 33744489071 scopus 로고    scopus 로고
    • Pathway alterations during glioma progression revealed by reverse phase protein lysate arrays
    • Jiang,R. et al. (2006) Pathway alterations during glioma progression revealed by reverse phase protein lysate arrays. Proteomics, 2964-2971.
    • (2006) Proteomics , pp. 2964-2971
    • Jiang, R.1
  • 17
    • 2342519443 scopus 로고    scopus 로고
    • The relationship between glycemic control and plasma vascular endothelial growth factor and endothelin-1 concentration in diabetic patients
    • Kakizawa,H. et al. (2004) The relationship between glycemic control and plasma vascular endothelial growth factor and endothelin-1 concentration in diabetic patients. Metabolism, 53, 350-555.
    • (2004) Metabolism , vol.53 , pp. 350-555
    • Kakizawa, H.1
  • 18
    • 0001242354 scopus 로고
    • An interior point algorithm for nonlinear quantile regression
    • Koenker,R. and Park,B.J. (1994) An interior point algorithm for nonlinear quantile regression. J. Econom., 71, 265-283.
    • (1994) J. Econom , vol.71 , pp. 265-283
    • Koenker, R.1    Park, B.J.2
  • 19
    • 0031822837 scopus 로고    scopus 로고
    • Tissue microarray for high-throughput molecular profiling of tumor specimens
    • Kononen,J. et al. (1998) Tissue microarray for high-throughput molecular profiling of tumor specimens. Nat. Med., 4, 844-847.
    • (1998) Nat. Med , vol.4 , pp. 844-847
    • Kononen, J.1
  • 20
    • 0037230034 scopus 로고    scopus 로고
    • Detection of multiple cytokines by protein arrays from cell lysate and tissue lysate
    • Lin,Y. et al. (2003) Detection of multiple cytokines by protein arrays from cell lysate and tissue lysate. Clin. Chem. Lab. Med., 41, 139-145.
    • (2003) Clin. Chem. Lab. Med , vol.41 , pp. 139-145
    • Lin, Y.1
  • 21
    • 0036840216 scopus 로고    scopus 로고
    • Software tools for high-throughput analysis and archiving of immunohi-stochemistry staining data obtained with tissue microarrays
    • Liu,C. et al. (2002) Software tools for high-throughput analysis and archiving of immunohi-stochemistry staining data obtained with tissue microarrays. Am. J. Pathol., 161, 1557-1565.
    • (2002) Am. J. Pathol , vol.161 , pp. 1557-1565
    • Liu, C.1
  • 22
    • 0036898579 scopus 로고    scopus 로고
    • Protein microarrays and proteomics
    • MacBeath,G. (2002) Protein microarrays and proteomics. Nat. Genet. 32, 526-532.
    • (2002) Nat. Genet , vol.32 , pp. 526-532
    • MacBeath, G.1
  • 23
    • 0034622925 scopus 로고    scopus 로고
    • Printing proteins as microarrays for high-throughput function determination
    • MacBeath,G. and Schreiber,S.L. (2000) Printing proteins as microarrays for high-throughput function determination. Science, 289, 1760-1763.
    • (2000) Science , vol.289 , pp. 1760-1763
    • MacBeath, G.1    Schreiber, S.L.2
  • 24
    • 18744376617 scopus 로고    scopus 로고
    • Robust estimation of protein expression ratios with lysate microarray technology
    • Mircean,C. et al. (2005) Robust estimation of protein expression ratios with lysate microarray technology. Bioinformatics, 21 1935-1942.
    • (2005) Bioinformatics , vol.21 , pp. 1935-1942
    • Mircean, C.1
  • 25
    • 34548108761 scopus 로고    scopus 로고
    • Individualized molecular medicine: Linking functional proteomics to select therapeutics targeting the P13K pathway for specific patients
    • Springer Verlag
    • Murph,M.M. et al. (2006) Individualized molecular medicine: linking functional proteomics to select therapeutics targeting the P13K pathway for specific patients. In Ovarian Cancer: State of the Art and Future Directions in Translational Research, Coukos,G. Springer Verlag.
    • (2006) Ovarian Cancer: State of the Art and Future Directions in Translational Research, Coukos,G
    • Murph, M.M.1
  • 26
    • 10744226821 scopus 로고    scopus 로고
    • Proteomic profiling of the NCI-60 cancer cell lines using new high-density reverse-phase lysate microarrays
    • Nishizuka,S. et al. (2003a) Proteomic profiling of the NCI-60 cancer cell lines using new high-density reverse-phase lysate microarrays. Proc. Natl Acad. Sci. USA, 100, 14229-14234.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 14229-14234
    • Nishizuka, S.1
  • 27
    • 0141816860 scopus 로고    scopus 로고
    • Diagnostic markers that distinguish colon and ovarian adenocarcinomas: Identification by genomic proteomic and tissue array profiling
    • Nishizuka,S. et al. (2003b) Diagnostic markers that distinguish colon and ovarian adenocarcinomas: Identification by genomic proteomic and tissue array profiling. Cancer Res., 63, 5243-5250.
    • (2003) Cancer Res , vol.63 , pp. 5243-5250
    • Nishizuka, S.1
  • 28
    • 0037326081 scopus 로고    scopus 로고
    • Mass spectrometrio-based approaches in quantitative proteomics
    • Ong,S.E. et al. (2003) Mass spectrometrio-based approaches in quantitative proteomics. Methods, 29, 124-430.
    • (2003) Methods , vol.29 , pp. 124-430
    • Ong, S.E.1
  • 29
    • 0043069476 scopus 로고    scopus 로고
    • Demystified ... tissue microarray technology
    • Packeisen,J. et al. (2003) Demystified ... tissue microarray technology. Mol. Pathol., 56, 198-204.
    • (2003) Mol. Pathol , vol.56 , pp. 198-204
    • Packeisen, J.1
  • 30
    • 0035848705 scopus 로고    scopus 로고
    • Reverse phase protein microarrays which capture disease progression show activation of pro-survival pathways at the cancer invasion front
    • Paweletz,C.P. et al. (2001) Reverse phase protein microarrays which capture disease progression show activation of pro-survival pathways at the cancer invasion front. Oncogene, 20, 1981-1989.
    • (2001) Oncogene , vol.20 , pp. 1981-1989
    • Paweletz, C.P.1
  • 31
    • 28044449746 scopus 로고    scopus 로고
    • Application of protein laysate microarrays to molecular marker verification and quantification
    • Ramaswamy,A. et al. (2005) -Application of protein laysate microarrays to molecular marker verification and quantification. Proteome Sci., 3, 9.
    • (2005) Proteome Sci , vol.3 , pp. 9
    • Ramaswamy, A.1
  • 32
    • 33746097413 scopus 로고    scopus 로고
    • New consensus nomenclature for mammalian keratins
    • Schweizer,J. et al. (2006) New consensus nomenclature for mammalian keratins. J. Cell. Biol., 174, 169-174.
    • (2006) J. Cell. Biol , vol.174 , pp. 169-174
    • Schweizer, J.1
  • 33
    • 17844377553 scopus 로고    scopus 로고
    • Use of reverse phase protein microarrays and reference standard development for molecular network analysis of metastatic ovarian carcinoma
    • Sheehan,K.M. et al. (2005) Use of reverse phase protein microarrays and reference standard development for molecular network analysis of metastatic ovarian carcinoma. Mol. Cell. Proteomics, 4, 346-355.
    • (2005) Mol. Cell. Proteomics , vol.4 , pp. 346-355
    • Sheehan, K.M.1
  • 34
    • 33744461054 scopus 로고    scopus 로고
    • Nonlinear modeling of protein expressions in protein arrays
    • Tabus,I. et al. (2006) Nonlinear modeling of protein expressions in protein arrays. IEEE Trans. Signal Processing, 54, 2394-2407.
    • (2006) IEEE Trans. Signal Processing , vol.54 , pp. 2394-2407
    • Tabus, I.1
  • 35
    • 33750456480 scopus 로고    scopus 로고
    • Reverse phase protein array (RPPA): Validation of a novel proteomic technology and utility for analysis of primary leukemia specimens. and hematopoetic stem cells (HSC)
    • Tibes,R. et al. (2006) Reverse phase protein array (RPPA): Validation of a novel proteomic technology and utility for analysis of primary leukemia specimens. and hematopoetic stem cells (HSC). Mol. Cancer. Ther., 5, 2512-2521.
    • (2006) Mol. Cancer. Ther , vol.5 , pp. 2512-2521
    • Tibes, R.1
  • 36
    • 4344644047 scopus 로고    scopus 로고
    • A 'mix and read' assay for insulin, using fluorometric microvolume assay technology
    • Toney,J.H. et al. (2003) A 'mix and read' assay for insulin, using fluorometric microvolume assay technology. Assay Drug Dev. Technol. 1, 521-525.
    • (2003) Assay Drug Dev. Technol , vol.1 , pp. 521-525
    • Toney, J.H.1
  • 37
    • 0035180732 scopus 로고    scopus 로고
    • Tissue microarrays for rapid linking of molecular changes to clinical endpoints
    • Torhorst,J. et al. (2001) Tissue microarrays for rapid linking of molecular changes to clinical endpoints. Am. J. Pathol., 159 2249-2256.
    • (2001) Am. J. Pathol , vol.159 , pp. 2249-2256
    • Torhorst, J.1
  • 38
    • 0242608354 scopus 로고    scopus 로고
    • Signal pathway profiling of ovarian cancer from human tissue specimens using reverse-phase protein microarrays
    • Wulfkuhle,J.D. et al. (2003) Signal pathway profiling of ovarian cancer from human tissue specimens using reverse-phase protein microarrays. Proteomics, 3, 2085-2090.
    • (2003) Proteomics , vol.3 , pp. 2085-2090
    • Wulfkuhle, J.D.1
  • 39
    • 0043166912 scopus 로고    scopus 로고
    • Protein microarrays using liquid phase fractionation of cell lysates
    • Yan,F. et al. (2003) Protein microarrays using liquid phase fractionation of cell lysates. Proteomics, 3, 1228-1235.
    • (2003) Proteomics , vol.3 , pp. 1228-1235
    • Yan, F.1
  • 40
    • 1542608799 scopus 로고    scopus 로고
    • Similarities of prosurvival signal in Bcl-2-positive and Bcl-2-negative follicular lymphomas identified by reverse phase protein microarray
    • Zha,H. et al. (2004) Similarities of prosurvival signal in Bcl-2-positive and Bcl-2-negative follicular lymphomas identified by reverse phase protein microarray. Lab. Invest., 84, 235-244.
    • (2004) Lab. Invest , vol.84 , pp. 235-244
    • Zha, H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.