-
1
-
-
33747408338
-
Two distinct pools of mesenchyme contribute to the development of the atrial septum
-
Mommersteeg MT, Soufan AT, de Lange FJ, van den Hoff MJ, Anderson RH, et al. (2006) Two distinct pools of mesenchyme contribute to the development of the atrial septum. Circ Res 99: 351–3.
-
(2006)
Circ Res
, vol.99
, pp. 351-353
-
-
Mommersteeg, M.T.1
Soufan, A.T.2
De Lange, F.J.3
Van Den Hoff, M.J.4
Anderson, R.H.5
-
2
-
-
36048929457
-
Isl1 expression at the venous pole identifies a novel role for the second heart field in cardiac development
-
Snarr BS, O'Neal JL, Chintalapudi MR, Wirrig EE, Phelps AL, et al. (2007) Isl1 expression at the venous pole identifies a novel role for the second heart field in cardiac development. Circ Res 101: 971–4.
-
(2007)
Circ Res
, vol.101
, pp. 971-974
-
-
Snarr, B.S.1
O'neal, J.L.2
Chintalapudi, M.R.3
Wirrig, E.E.4
Phelps, A.L.5
-
3
-
-
34248589631
-
A spatiotemporal evaluation of the contribution of the dorsal mesenchymal protrusion to cardiac development
-
Snarr BS, Wirrig EE, Phelps AL, Trusk TC, Wessels A, (2007) A spatiotemporal evaluation of the contribution of the dorsal mesenchymal protrusion to cardiac development. Dev Dyn 236: 1287–94.
-
(2007)
Dev Dyn
, vol.236
, pp. 1287-1294
-
-
Snarr, B.S.1
Wirrig, E.E.2
Phelps, A.L.3
Trusk, T.C.4
Wessels, A.5
-
4
-
-
49949115945
-
Intracardiac septation requires hedgehog-dependent cellular contributions from outside the heart
-
Goddeeris MM, Rho S, Petiet A, Davenport CL, Johnson et al. (2008) Intracardiac septation requires hedgehog-dependent cellular contributions from outside the heart. Development 135: 1887–1895.
-
(2008)
Development
, vol.135
, pp. 1887-1895
-
-
Goddeeris, M.M.1
Rho, S.2
Petiet, A.3
Davenport, C.L.4
Johnson5
-
5
-
-
68549111357
-
sonic hedgehog is required in pulmonary endoderm for atrial septation
-
Hoffmann AD, Peterson MA, Friedland-Little JM, Anderson SA, Moskowitz IP, (2009) sonic hedgehog is required in pulmonary endoderm for atrial septation. Development 136: 1761–1770.
-
(2009)
Development
, vol.136
, pp. 1761-1770
-
-
Hoffmann, A.D.1
Peterson, M.A.2
Friedland-Little, J.M.3
Anderson, S.A.4
Moskowitz, I.P.5
-
6
-
-
84865082563
-
Tbx5-hedgehog molecular networks are essential in the second heart field for atrial septation
-
Xie L, Hoffmann AD, Burnicka-Turek O, Friedland-Little JM, Zhang K, et al. (2012) Tbx5-hedgehog molecular networks are essential in the second heart field for atrial septation. Dev Cell 23: 280–91.
-
(2012)
Dev Cell
, vol.23
, pp. 280-291
-
-
Xie, L.1
Hoffmann, A.D.2
Burnicka-Turek, O.3
Friedland-Little, J.M.4
Zhang, K.5
-
7
-
-
0019133661
-
Mutations affecting segment number and polarity in Drosophila
-
Nüsslein-Volhard C, Wieschaus E, (1980) Mutations affecting segment number and polarity in Drosophila. Nature 287: 795–801.
-
(1980)
Nature
, vol.287
, pp. 795-801
-
-
Nüsslein-Volhard, C.1
Wieschaus, E.2
-
8
-
-
0035577854
-
Hedgehog signaling in animal development: paradigms and principles
-
Ingham PW, McMahon AP, (2001) Hedgehog signaling in animal development: paradigms and principles. Genes Dev 15: 3059–87.
-
(2001)
Genes Dev
, vol.15
, pp. 3059-3087
-
-
Ingham, P.W.1
McMahon, A.P.2
-
9
-
-
0035958941
-
Smoothened mutants reveal redundant roles for Shh and Ihh signaling including regulation of L/R symmetry by the mouse node
-
Zhang XM, Ramalho-Santos M, McMahon AP, (2001) Smoothened mutants reveal redundant roles for Shh and Ihh signaling including regulation of L/R symmetry by the mouse node. Cell 106: 781–92.
-
(2001)
Cell
, vol.106
, pp. 781-792
-
-
Zhang, X.M.1
Ramalho-Santos, M.2
McMahon, A.P.3
-
10
-
-
22144454250
-
Sonic hedgehog is required for cardiac outflow tract and neural crest cell development
-
Washington Smoak I, Byrd NA, Abu-Issa R, Goddeeris MM, Anderson R, et al. (2005) Sonic hedgehog is required for cardiac outflow tract and neural crest cell development. Dev Biol 283: 357–72.
-
(2005)
Dev Biol
, vol.283
, pp. 357-372
-
-
Washington Smoak, I.1
Byrd, N.A.2
Abu-Issa, R.3
Goddeeris, M.M.4
Anderson, R.5
-
11
-
-
0030636780
-
Mutations in human TBX5 [corrected] cause limb and cardiac malformation in Holt-Oram syndrome
-
Basson CT, Bachinsky DR, Lin RC, Levi T, Elkins JA, et al. (1997) Mutations in human TBX5 [corrected] cause limb and cardiac malformation in Holt-Oram syndrome. Nat Genet 15: 30–35.
-
(1997)
Nat Genet
, vol.15
, pp. 30-35
-
-
Basson, C.T.1
Bachinsky, D.R.2
Lin, R.C.3
Levi, T.4
Elkins, J.A.5
-
12
-
-
0043267988
-
GATA4 mutations cause human congenital heart defects and reveal an interaction with TBX5
-
Garg V, Kathiriya IS, Barnes R, Schluterman MK, King IN, et al. (2003) GATA4 mutations cause human congenital heart defects and reveal an interaction with TBX5. Nature 424: 443–447.
-
(2003)
Nature
, vol.424
, pp. 443-447
-
-
Garg, V.1
Kathiriya, I.S.2
Barnes, R.3
Schluterman, M.K.4
King, I.N.5
-
13
-
-
1842413728
-
Holt-Oram syndrome is caused by mutations in TBX5, a member of the Brachyury (T) gene family
-
Li QY, Newbury-Ecob RA, Terrett JA, Wilson DI, Curtis AR, et al. (1997) Holt-Oram syndrome is caused by mutations in TBX5, a member of the Brachyury (T) gene family. Nat Genet 15: 21–29.
-
(1997)
Nat Genet
, vol.15
, pp. 21-29
-
-
Li, Q.Y.1
Newbury-Ecob, R.A.2
Terrett, J.A.3
Wilson, D.I.4
Curtis, A.R.5
-
14
-
-
0032479573
-
Congenital heart disease caused by mutations in the transcription factor NKX2-5
-
Schott JJ, Benson DW, Basson CT, Pease W, Silberbach GM, et al. (1998) Congenital heart disease caused by mutations in the transcription factor NKX2-5. Science 281: 108–111.
-
(1998)
Science
, vol.281
, pp. 108-111
-
-
Schott, J.J.1
Benson, D.W.2
Basson, C.T.3
Pease, W.4
Silberbach, G.M.5
-
15
-
-
17944378083
-
A murine model of Holt-Oram syndrome defines roles of the T-box transcription factor Tbx5 in cardiogenesis and disease
-
Bruneau BG, Nemer G, Schmitt JP, Charron F, Robitaille L, et al. (2001) A murine model of Holt-Oram syndrome defines roles of the T-box transcription factor Tbx5 in cardiogenesis and disease. Cell 106: 709–21.
-
(2001)
Cell
, vol.106
, pp. 709-721
-
-
Bruneau, B.G.1
Nemer, G.2
Schmitt, J.P.3
Charron, F.4
Robitaille, L.5
-
16
-
-
0034931034
-
Tbx5 associates with Nkx2-5 and synergistically promotes cardiomyocyte differentiation
-
Hiroi Y, Kudoh S, Monzen K, Ikeda Y, Yazaki Y, et al. (2001) Tbx5 associates with Nkx2-5 and synergistically promotes cardiomyocyte differentiation. Nat Genet 28: 276–280.
-
(2001)
Nat Genet
, vol.28
, pp. 276-280
-
-
Hiroi, Y.1
Kudoh, S.2
Monzen, K.3
Ikeda, Y.4
Yazaki, Y.5
-
17
-
-
66649127942
-
Directed transdifferentiation of mouse mesoderm to heart tissue by defined factors
-
Takeuchi JK, Bruneau BG, (2009) Directed transdifferentiation of mouse mesoderm to heart tissue by defined factors. Nature 459: 708–711.
-
(2009)
Nature
, vol.459
, pp. 708-711
-
-
Takeuchi, J.K.1
Bruneau, B.G.2
-
18
-
-
33746415347
-
TBX5 is required for embryonic cardiac cell cycle progression
-
Goetz SC, Brown DD, Conlon FL, (2006) TBX5 is required for embryonic cardiac cell cycle progression. Development 133: 2575–84.
-
(2006)
Development
, vol.133
, pp. 2575-2584
-
-
Goetz, S.C.1
Brown, D.D.2
Conlon, F.L.3
-
19
-
-
44449162472
-
Tbx5-dependent pathway regulating diastolic function in congenital heart disease
-
Zhu Y, Gramolini AO, Walsh MA, Zhou YQ, Slorach C, et al. (2008) Tbx5-dependent pathway regulating diastolic function in congenital heart disease. Proc Natl Acad Sci U S A 105: 5519–24.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 5519-5524
-
-
Zhu, Y.1
Gramolini, A.O.2
Walsh, M.A.3
Zhou, Y.Q.4
Slorach, C.5
-
20
-
-
84863543347
-
TBX5 drives Scn5a expression to regulate cardiac conduction system function
-
Arnolds DE, Liu F, Fahrenbach JP, Kim GH, Schillinger KJ, et al. (2012) TBX5 drives Scn5a expression to regulate cardiac conduction system function. J Clin Invest 122: 2509–18.
-
(2012)
J Clin Invest
, vol.122
, pp. 2509-2518
-
-
Arnolds, D.E.1
Liu, F.2
Fahrenbach, J.P.3
Kim, G.H.4
Schillinger, K.J.5
-
21
-
-
33748489726
-
Tbx5-dependent rheostatic control of cardiac gene expression and morphogenesis
-
Mori AD, Zhu Y, Vahora I, Nieman B, Koshiba-Takeuchi K, et al. (2006) Tbx5-dependent rheostatic control of cardiac gene expression and morphogenesis. Dev Biol 297: 566–86.
-
(2006)
Dev Biol
, vol.297
, pp. 566-586
-
-
Mori, A.D.1
Zhu, Y.2
Vahora, I.3
Nieman, B.4
Koshiba-Takeuchi, K.5
-
22
-
-
33846689706
-
Using GOstats to test gene lists for GO term association
-
Falcon S, Gentleman R, (2007) Using GOstats to test gene lists for GO term association. Bioinformatics 23: 257–258.
-
(2007)
Bioinformatics
, vol.23
, pp. 257-258
-
-
Falcon, S.1
Gentleman, R.2
-
23
-
-
53549125545
-
A genome-scale analysis of the cis-regulatory circuitry underlying sonic hedgehog-mediated patterning of the mammalian limb
-
Vokes SA, Ji H, Wong WH, McMahon AP, (2008) A genome-scale analysis of the cis-regulatory circuitry underlying sonic hedgehog-mediated patterning of the mammalian limb. Genes Dev 22: 2651–63.
-
(2008)
Genes Dev
, vol.22
, pp. 2651-2663
-
-
Vokes, S.A.1
Ji, H.2
Wong, W.H.3
McMahon, A.P.4
-
24
-
-
27744507847
-
The right ventricle, outflow tract, and ventricular septum comprise a restricted expression domain within the secondary/anterior heart field
-
Verzi MP, McCulley DJ, De Val S, Dodou E, Black BL, (2005) The right ventricle, outflow tract, and ventricular septum comprise a restricted expression domain within the secondary/anterior heart field. Dev Biol 287: 134–45.
-
(2005)
Dev Biol
, vol.287
, pp. 134-145
-
-
Verzi, M.P.1
McCulley, D.J.2
De Val, S.3
Dodou, E.4
Black, B.L.5
-
25
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS)
-
Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, et al. (2008) Model-based analysis of ChIP-Seq (MACS). Genome Biol 9: R137.
-
(2008)
Genome Biol
, vol.9
, pp. R137
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
-
26
-
-
71749120382
-
Finding distal regulatory elements in the human genome
-
Heintzman ND, Ren B, (2009) Finding distal regulatory elements in the human genome. Curr Opin Genet Dev 19: 541–9.
-
(2009)
Curr Opin Genet Dev
, vol.19
, pp. 541-549
-
-
Heintzman, N.D.1
Ren, B.2
-
27
-
-
70249088327
-
Genomic views of distant-acting enhancers
-
Visel A, Rubin EM, Pennacchio LA, (2009) Genomic views of distant-acting enhancers. Nature 461: 199–205.
-
(2009)
Nature
, vol.461
, pp. 199-205
-
-
Visel, A.1
Rubin, E.M.2
Pennacchio, L.A.3
-
28
-
-
34548059291
-
Functional analysis of the human N-acetyltransferase 1 major promoter: quantitation of tissue expression and identification of critical sequence elements
-
Husain A, Zhang X, Doll MA, States JC, Barker DF, et al. (2007) Functional analysis of the human N-acetyltransferase 1 major promoter: quantitation of tissue expression and identification of critical sequence elements. Drug Metab Dispos 35: 1649–56.
-
(2007)
Drug Metab Dispos
, vol.35
, pp. 1649-1656
-
-
Husain, A.1
Zhang, X.2
Doll, M.A.3
States, J.C.4
Barker, D.F.5
-
29
-
-
84865800494
-
The long-range interaction landscape of gene promoters
-
Sanyal A, Lajoie BR, Jain G, Dekker J, (2012) The long-range interaction landscape of gene promoters. Nature 489: 109–13.
-
(2012)
Nature
, vol.489
, pp. 109-113
-
-
Sanyal, A.1
Lajoie, B.R.2
Jain, G.3
Dekker, J.4
-
30
-
-
77952567987
-
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
-
Heinz S, Benner C, Spann N, Bertolino E, Lin YC, et al. (2010) Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell 38: 576–589.
-
(2010)
Mol Cell
, vol.38
, pp. 576-589
-
-
Heinz, S.1
Benner, C.2
Spann, N.3
Bertolino, E.4
Lin, Y.C.5
-
31
-
-
33644876958
-
TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes
-
Matys V, Kel-Margoulis OV, Fricke E, Liebich I, Land S, et al. (2006) TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes. Nucleic Acids Res 34: D108–110.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. D108-110
-
-
Matys, V.1
Kel-Margoulis, O.V.2
Fricke, E.3
Liebich, I.4
Land, S.5
-
32
-
-
33645535002
-
Foxf1 and Foxf2 control murine gut development by limiting mesenchymal Wnt signaling and promoting extracellular matrix production
-
Ormestad M, Astorga J, Landgren H, Wang T, Johansson BR, et al. (2006) Foxf1 and Foxf2 control murine gut development by limiting mesenchymal Wnt signaling and promoting extracellular matrix production. Development 133: 833–43.
-
(2006)
Development
, vol.133
, pp. 833-843
-
-
Ormestad, M.1
Astorga, J.2
Landgren, H.3
Wang, T.4
Johansson, B.R.5
-
33
-
-
79955027617
-
Co-occupancy by multiple cardiac transcription factors identifies transcriptional enhancers active in heart
-
He A, Kong SW, Ma Q, Pu WT, (2011) Co-occupancy by multiple cardiac transcription factors identifies transcriptional enhancers active in heart. Proc Natl Acad Sci U S A 108: 5632–7.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 5632-5637
-
-
He, A.1
Kong, S.W.2
Ma, Q.3
Pu, W.T.4
-
34
-
-
84873829893
-
The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse
-
Grote P, Wittler L, Hendrix D, Koch F, Währisch S, et al. (2013) The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse. Dev Cell 24: 206–14.
-
(2013)
Dev Cell
, vol.24
, pp. 206-214
-
-
Grote, P.1
Wittler, L.2
Hendrix, D.3
Koch, F.4
Währisch, S.5
-
35
-
-
0024584093
-
Inducible expression of an hsp68-lacZ hybrid gene in transgenic mice
-
Kothary R, Clapoff S, Darling S, Perry MD, Moran LA, et al. (1989) Inducible expression of an hsp68-lacZ hybrid gene in transgenic mice. Development 105: 707–14.
-
(1989)
Development
, vol.105
, pp. 707-714
-
-
Kothary, R.1
Clapoff, S.2
Darling, S.3
Perry, M.D.4
Moran, L.A.5
-
36
-
-
65549099669
-
FoxF1 and FoxL1 link hedgehog signaling and the control of epithelial proliferation in the developing stomach and intestine
-
Madison BB, McKenna LB, Dolson D, Epstein DJ, Kaestner KH, (2008) FoxF1 and FoxL1 link hedgehog signaling and the control of epithelial proliferation in the developing stomach and intestine. J Biol Chem 284: 5936–44.
-
(2008)
J Biol Chem
, vol.284
, pp. 5936-5944
-
-
Madison, B.B.1
McKenna, L.B.2
Dolson, D.3
Epstein, D.J.4
Kaestner, K.H.5
-
37
-
-
0034945359
-
Haploinsufficiency of the forkhead gene Foxf1, a target for sonic hedgehog signaling, causes lung and foregut malformations
-
Mahlapuu M, Enerbäck S, Carlsson P, (2001) Haploinsufficiency of the forkhead gene Foxf1, a target for sonic hedgehog signaling, causes lung and foregut malformations. Development 128: 2397–406.
-
(2001)
Development
, vol.128
, pp. 2397-2406
-
-
Mahlapuu, M.1
Enerbäck, S.2
Carlsson, P.3
-
38
-
-
35548965484
-
FoxF is essential for FGF-induced migration of heart progenitor cells in the ascidian Ciona intestinalis
-
Beh J, Shi W, Levine M, Davidson B, Christiaen L, (2007) FoxF is essential for FGF-induced migration of heart progenitor cells in the ascidian Ciona intestinalis. Development 134: 3297–305.
-
(2007)
Development
, vol.134
, pp. 3297-3305
-
-
Beh, J.1
Shi, W.2
Levine, M.3
Davidson, B.4
Christiaen, L.5
-
39
-
-
45549105130
-
The transcription/migration interface in heart precursors of Ciona intestinalis
-
Christiaen L, Davidson B, Kawashima T, Powell W, Nolla H, et al. (2008) The transcription/migration interface in heart precursors of Ciona intestinalis. Science 320: 1349–52.
-
(2008)
Science
, vol.320
, pp. 1349-1352
-
-
Christiaen, L.1
Davidson, B.2
Kawashima, T.3
Powell, W.4
Nolla, H.5
-
40
-
-
34250612602
-
Genomic characterization of Gli-activator targets in sonic hedgehog-mediated neural patterning
-
Vokes SA, Ji H, McCuine S, Tenzen T, Giles S, et al. (2007) Genomic characterization of Gli-activator targets in sonic hedgehog-mediated neural patterning. Development 134: 1977–89.
-
(2007)
Development
, vol.134
, pp. 1977-1989
-
-
Vokes, S.A.1
Ji, H.2
McCuine, S.3
Tenzen, T.4
Giles, S.5
-
41
-
-
28744458859
-
Bioconductor: open software development for computational biology and bioinformatics
-
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, et al. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5: R80.
-
(2004)
Genome Biol
, vol.5
, pp. R80
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
-
42
-
-
11244346557
-
Variance stabilization applied to microarray data calibration and to the quantification of differential expression
-
Huber W, von Heydebreck A, Sültmann H, Poustka A, Vingron M, (2002) Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics 18 Suppl 1: S96–104.
-
(2002)
Bioinformatics
, vol.18
, pp. S96-104
-
-
Huber, W.1
Von Heydebreck, A.2
Sültmann, H.3
Poustka, A.4
Vingron, M.5
-
43
-
-
78649491922
-
Exon array analysis using re-defined probe sets results in reliable identification of alternatively spliced genes in non-small cell lung cancer
-
Langer W, Sohler F, Leder G, Beckmann G, Seidel H, et al. (2010) Exon array analysis using re-defined probe sets results in reliable identification of alternatively spliced genes in non-small cell lung cancer. BMC Genomics 11: 676.
-
(2010)
BMC Genomics
, vol.11
, pp. 676
-
-
Langer, W.1
Sohler, F.2
Leder, G.3
Beckmann, G.4
Seidel, H.5
-
44
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher VG, Tibshirani R, Chu G, (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci U S A 98: 5116–5121.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
45
-
-
0035189928
-
Sensitive nonradioactive detection of mRNA in tissue sections: novel application of the whole-mount in situ hybridization protocol
-
Moorman AF, Houweling AC, de Boer PA, Christoffels VM, (2001) Sensitive nonradioactive detection of mRNA in tissue sections: novel application of the whole-mount in situ hybridization protocol. J Histochem Cytochem 49: 1–8.
-
(2001)
J Histochem Cytochem
, vol.49
, pp. 1-8
-
-
Moorman, A.F.1
Houweling, A.C.2
De Boer, P.A.3
Christoffels, V.M.4
|