Identification and characterization of colorectal cancer using Raman spectroscopy and feature selection techniques

Optics Express

Volumn 22, Issue 21, 2014, Pages 25895-25908

  Li, Shaoxin ^a,d   Chen, Gong ^b   Zhang, Yanjiao ^a   Guo, Zhouyi ^c   Liu, Zhiming ^c   Xu, Junfa ^d   Li, Xueqiang ^a   Lin, Lin ^a  

^a GUANGDONG MEDICAL UNIVERSITY   (China)

^b SUN YAT SEN UNIVERSITY CANCER CENTER   (China)

^c SOUTH CHINA NORMAL UNIVERSITY   (China)

^d Key Laboratory for Medical Molecular Diagnostics of Guangdong Province   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ANT COLONY OPTIMIZATION; DIAGNOSIS; FEATURE EXTRACTION; HISTOLOGY; INFRARED DEVICES; NUCLEIC ACIDS; RAMAN SPECTROSCOPY; SUPPORT VECTOR MACHINES; TISSUE;

ANT COLONY OPTIMIZATION (ACO); COLORECTAL CANCER; DIAGNOSTIC ACCURACY; DIAGNOSTIC ALGORITHMS; DIAGNOSTIC MODEL; NEAR INFRARED RAMAN SPECTROSCOPY; NORMAL RAMAN SPECTROSCOPIES; SELECTION TECHNIQUES;

DISEASES;

ADENOCARCINOMA; ALGORITHM; COLORECTAL NEOPLASMS; FEMALE; HUMAN; MALE; MIDDLE AGED; PATHOLOGY; PROCEDURES; RAMAN SPECTROMETRY; RECEIVER OPERATING CHARACTERISTIC; SUPPORT VECTOR MACHINE; THREE DIMENSIONAL IMAGING;

ADENOCARCINOMA; ALGORITHMS; COLORECTAL NEOPLASMS; FEMALE; HUMANS; IMAGING, THREE-DIMENSIONAL; MALE; MIDDLE AGED; ROC CURVE; SPECTRUM ANALYSIS, RAMAN; SUPPORT VECTOR MACHINES;

EID: 84908193672     PISSN: None     EISSN: 10944087     Source Type: Journal    
DOI: 10.1364/OE.22.025895     Document Type: Article

References (40)

1. X. Shao, W. Zheng, and Z. Huang, "In vivo diagnosis of colonic precancer and cancer using near-infrared autofluorescence spectroscopy and biochemical modeling," J. Biomed. Opt. 16(6), 067005 (2011).
2. A. Molckovsky, L. M. Song, M. G. Shim, N. E. Marcon, and B. C. Wilson, "Diagnostic potential of near-infrared Raman spectroscopy in the colon: differentiating adenomatous from hyperplastic polyps," Gastrointest. Endosc. 57(3), 396-402 (2003).
3. M. E. Keating and H. J. Byrne, "Raman spectroscopy in nanomedicine: current status and future perspective," Nanomedicine (Lond) 8(8), 1335-1351 (2013).
4. E. B. Hanlon, R. Manoharan, T. W. Koo, K. E. Shafer, J. T. Motz, M. Fitzmaurice, J. R. Kramer, I. Itzkan, R. R. Dasari, and M. S. Feld, "Prospects for in vivo Raman spectroscopy," Phys. Med. Biol. 45(2), R1-R59 (2000).
5. Q. Tu and C. Chang, "Diagnostic applications of Raman spectroscopy," Nanomedicine 8(5), 545-558 (2012).
6. C. Kallaway, L. M. Almond, H. Barr, J. Wood, J. Hutchings, C. Kendall, and N. Stone, "Advances in the clinical application of Raman spectroscopy for cancer diagnostics," Photodiagn. Photodyn. Ther. 10(3), 207-219 (2013).
7. H. Lui, J. Zhao, D. McLean, and H. Zeng, "Real-time Raman spectroscopy for in vivo skin cancer diagnosis," Cancer Res. 72(10), 2491-2500 (2012).
8. Z. Huang, A. McWilliams, H. Lui, D. I. McLean, S. Lam, and H. Zeng, "Near-infrared Raman spectroscopy for optical diagnosis of lung cancer," Int. J. Cancer 107(6), 1047-1052 (2003).
9. M. S. Bergholt, W. Zheng, K. Lin, K. Y. Ho, M. Teh, K. G. Yeoh, J. B. Yan So, and Z. Huang, "In vivo diagnosis of gastric cancer using Raman endoscopy and ant colony optimization techniques," Int. J. Cancer 128(11), 2673-2680 (2011).
10. H. Shinzawa, K. Awa, W. Kanematsu, and Y. Ozaki, "Multivariate data analysis for Raman spectroscopic imaging," J. Raman Spectrosc. 40(12), 1720-1725 (2009).
11. S. Duraipandian, W. Zheng, J. Ng, J. J. Low, A. Ilancheran, and Z. Huang, "In vivo diagnosis of cervical precancer using Raman spectroscopy and genetic algorithm techniques," Analyst (Lond.) 136(20), 4328-4336 (2011).
12. S. K. Teh, W. Zheng, K. Y. Ho, M. Teh, K. G. Yeoh, and Z. Huang, "Diagnostic potential of near-infrared Raman spectroscopy in the stomach: differentiating dysplasia from normal tissue," Br. J. Cancer 98(2), 457-465 (2008).
13. M. Dash and H. Liu, "Feature Selection for Classification," Intell. Data Anal. 1(1-4), 131-156 (1997).
14. H. W. Ressom, R. S. Varghese, S. K. Drake, G. L. Hortin, M. Abdel-Hamid, C. A. Loffredo, and R. Goldman, "Peak selection from MALDI-TOF mass spectra using ant colony optimization," Bioinformatics 23(5), 619-626 (2007).
15. R. M. Balabin and S. V. Smirnov, "Variable selection in near-infrared spectroscopy: benchmarking of feature selection methods on biodiesel data," Anal. Chim. Acta 692(1-2), 63-72 (2011).
16. M. Dorigo and C. Blum, "Ant colony optimization theory: A survey," Theor. Comput. Sci. 344(2-3), 243-278 (2005).
17. D. Martens, M. D. Backer, and R. Haesen, "Classification With Ant Colony Optimization," IEEE Trans. Evol. Comput. 11(5), 651-665 (2007).
18. B. Fox, W. Xiang, and H. P. Lee, "Industrial applications of the ant colony optimization algorithm," Int. J. Adv. Manuf. Technol. 31(7-8), 805-814 (2006).
19. K. L. Huang and C. J. Liao, "Ant colony optimization combined with taboo search for the job shop scheduling problem," Comput. Oper. Res. 35(4), 1030-1046 (2008).
20. V. Vapnik, Statistical Learning Theory (Wiley, 1998).
21. C. J. C. Burges, "A tutorial on support vector machines for pattern recognition," Data Min. Knowl. Discov. 2(2), 121-167 (1998).
22. E. Osuna, R. Freund, and F. Girosit, "Training support vector machines: an application to face detection," in Proceedings of IEEE Conference on Computer Vision and Pattern Recognition (IEEE, 1997), pp. 130-136.
23. J. Zhao, H. Lui, D. I. McLean, and H. Zeng, "Automated autofluorescence background subtraction algorithm for biomedical Raman spectroscopy," Appl. Spectrosc. 61(11), 1225-1232 (2007).
24. F. Abdat, M. Amouroux, Y. Guermeur, and W. Blondel, "Hybrid feature selection and SVM-based classification for mouse skin precancerous stages diagnosis from bimodal spectroscopy," Opt. Express 20(1), 228-244 (2012).
25. M. Dorigo and T. Stützle, Ant Colony Optimization (Academic,2004).
26. B. Brozek-Pluska, I. Placek, K. Kurczewski, Z. Morawiec, M. Tazbir, and H. Abramczyk, "Breast cancer diagnostics by Raman spectroscopy," J. Mol. Liq. 141(3), 145-148 (2008).
27. M. S. Bergholt, W. Zheng, K. Lin, K. Y. Ho, M. Teh, K. G. Yeoh, J. B. Y. So, and Z. Huang, "In Vivo Diagnosis of Esophageal Cancer using image-guided Raman endoscopy and Biomolecular modeling," Technol. Cancer Res. Treat. 10(2), 103-112 (2011).
28. N. Stone, C. Kendall, N. Shepherd, P. Crow, and H. Barr, "Near-infrared Raman spectroscopy for the classification of epithelial pre-cancers and cancers," J. Raman Spectrosc. 33(7), 564-573 (2002).
29. K. Chen, Y. Qin, F. Zheng, M. Sun, and D. Shi, "Diagnosis of colorectal cancer using Raman spectroscopy of laser-trapped single living epithelial cells," Opt. Lett. 31(13), 2015-2017 (2006).
30. D. Lin, S. Feng, J. Pan, Y. Chen, J. Lin, G. Chen, S. Xie, H. Zeng, and R. Chen, "Colorectal cancer detection by gold nanoparticle based surface-enhanced Raman spectroscopy of blood serum and statistical analysis," Opt. Express 19(14), 13565-13577 (2011).
31. D. Faraggi and B. Reiser, "Estimation of the area under the ROC curve," Stat. Med. 21(20), 3093-3106 (2002).
32. J. F. Li, Y. F. Huang, Y. Ding, Z. L. Yang, S. B. Li, X. S. Zhou, F. R. Fan, W. Zhang, Z. Y. Zhou, Y. Wu, B. Ren, Z. L. Wang, and Z. Q. Tian, "Shell-isolated nanoparticle-enhanced Raman spectroscopy," Nature 464(7287), 392-395 (2010).
33. A. T. Harris, A. Rennie, H. Waqar-Uddin, S. R. Wheatley, S. K. Ghosh, D. P. Martin-Hirsch, S. E. Fisher, A. S. High, J. Kirkham, and T. Upile, "Raman spectroscopy in head and neck cancer," Head Neck Oncol 2(1), 26 (2010).
34. A. Saha and V. V. Yakovlev, "Towards a rational drug design: Raman micro-spectroscopy analysis of prostate cancer cells treated with an aqueous extract of Nerium Oleander," J. Raman Spectrosc. 40(11), 1459-1460 (2009).
35. P. O. Andrade, R. A. Bitar, K. Yassoyama, H. Martinho, A. M. E. Santo, P. M. Bruno, and A. A. Martin, "Study of normal colorectal tissue by FT-Raman spectroscopy," Anal. Bioanal. Chem. 387(5), 1643-1648 (2007).
36. S. X. Li, Q. Y. Chen, Y. J. Zhang, Z. M. Liu, H. L. Xiong, Z. Y. Guo, H. Q. Mai, and S. H. Liu, "Detection of nasopharyngeal cancer using confocal Raman spectroscopy and genetic algorithm technique," J. Biomed. Opt. 17(12), 125003 (2012).
37. Z. Gao, B. Hu, C. Ding, and J. Yu, "Micro Raman Spect ra for Lipids in Colorectal Tissue," Spectrosc. Spect. Anal. 30, 692-696 (2010).
38. S. X. Li, Q. Y. Zeng, L. F. Li, Y. J. Zhang, M. M. Wan, Z. M. Liu, H. L. Xiong, Z. Y. Guo, and S. H. Liu, "Study of support vector machine and serum surface-enhanced Raman spectroscopy for noninvasive esophageal cancer detection," J. Biomed. Opt. 18(2), 027008 (2013).
39. M. Sattlecker, C. Bessant, J. Smith, and N. Stone, "Investigation of support vector machines and Raman spectroscopy for lymph node diagnostics," Analyst (Lond.) 135(5), 895-901 (2010).
40. P. C. Ashok, B. B. Praveen, N. Bellini, A. Riches, K. Dholakia, and C. S. Herrington, "Multi-modal approach using Raman spectroscopy and optical coherence tomography for the discrimination of colonic adenocarcinoma from normal colon," Biomed. Opt. Express 4(10), 2179-2186 (2013).