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Volumn 9, Issue 10, 2014, Pages

Integrated analysis of microarray data of atherosclerotic plaques: Modulation of the ubiquitin-proteasome system

Author keywords

[No Author keywords available]

Indexed keywords

DNA; MESSENGER RNA; MICRORNA; PROTEASOME; UBIQUITIN; TRANSCRIPTION FACTOR;

EID: 84908027284     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0110288     Document Type: Article
Times cited : (9)

References (49)
  • 1
    • 79951554058 scopus 로고    scopus 로고
    • Stemming the global tsunami of cardiovascular disease
    • Anand SS, Yusuf S (2011) Stemming the global tsunami of cardiovascular disease. Lancet 377:529-532.
    • (2011) Lancet , vol.377 , pp. 529-532
    • Anand, S.S.1    Yusuf, S.2
  • 2
    • 0034648768 scopus 로고    scopus 로고
    • Atherosclerosis
    • Lusis AJ (2000) Atherosclerosis. Nature 407:233-241.
    • (2000) Nature , vol.407 , pp. 233-241
    • Lusis, A.J.1
  • 3
    • 39749145196 scopus 로고    scopus 로고
    • Translating molecular discoveries into new therapies for atherosclerosis
    • Rader DJ, Daugherty A (2008) Translating molecular discoveries into new therapies for atherosclerosis. Nature 451:904-913.
    • (2008) Nature , vol.451 , pp. 904-913
    • Rader, D.J.1    Daugherty, A.2
  • 4
    • 84880061862 scopus 로고    scopus 로고
    • MiR-21 is overexpressed in response to high glucose and protects endothelial cells from apoptosis
    • Zeng J, Xiong Y, Li G, Liu M, He T, et al. (2013) MiR-21 is overexpressed in response to high glucose and protects endothelial cells from apoptosis. Exp Clin Endocrinol Diabetes 121:425-430.
    • (2013) Exp Clin Endocrinol Diabetes , vol.121 , pp. 425-430
    • Zeng, J.1    Xiong, Y.2    Li, G.3    Liu, M.4    He, T.5
  • 5
    • 84885993605 scopus 로고    scopus 로고
    • MiR-490-3p modulates the proliferation of vascular smooth muscle cells induced by ox-LDL through targeting PAPP-A
    • Sun Y, Chen D, Cao L, Zhang R, Zhou J, et al. (2013) MiR-490-3p modulates the proliferation of vascular smooth muscle cells induced by ox-LDL through targeting PAPP-A. Cardiovasc Res 100:272-279.
    • (2013) Cardiovasc Res , vol.100 , pp. 272-279
    • Sun, Y.1    Chen, D.2    Cao, L.3    Zhang, R.4    Zhou, J.5
  • 6
    • 84878259075 scopus 로고    scopus 로고
    • The microRNA miR-155 controls CD8 (+) T cell responses by regulating interferon signaling
    • Gracias DT, Stelekati E, Hope JL, Boesteanu AC, Doering TA, et al. (2013) The microRNA miR-155 controls CD8 (+) T cell responses by regulating interferon signaling. Nat Immunol 14:593-602.
    • (2013) Nat Immunol , vol.14 , pp. 593-602
    • Gracias, D.T.1    Stelekati, E.2    Hope, J.L.3    Boesteanu, A.C.4    Doering, T.A.5
  • 7
    • 67649349865 scopus 로고    scopus 로고
    • MicroRNA-125a-5p partly regulates the inflammatory response, lipid uptake, and ORP9 expression in oxLDL-stimulated monocyte/macrophages
    • Chen T, Huang Z, Wang L, Wang Y, Wu F, et al. (2009) MicroRNA-125a-5p partly regulates the inflammatory response, lipid uptake, and ORP9 expression in oxLDL-stimulated monocyte/macrophages. Cardiovasc Res 83:131-139.
    • (2009) Cardiovasc Res , vol.83 , pp. 131-139
    • Chen, T.1    Huang, Z.2    Wang, L.3    Wang, Y.4    Wu, F.5
  • 8
    • 84880592128 scopus 로고    scopus 로고
    • Atherosclerosis: Cell biology and lipoproteins-panoramic views of DNA methylation landscapes of atherosclerosis
    • Zaina S, Lund G (2013) Atherosclerosis: cell biology and lipoproteins-panoramic views of DNA methylation landscapes of atherosclerosis. Curr Opin Lipidol 24:369-370.
    • (2013) Curr Opin Lipidol , vol.24 , pp. 369-370
    • Zaina, S.1    Lund, G.2
  • 9
    • 84878109610 scopus 로고    scopus 로고
    • Methylation of FOXP3 in regulatory T cells is related to the severity of coronary artery disease
    • Jia L, Zhu L, Wang JZ, Wang XJ, Chen JZ, et al. (2013) Methylation of FOXP3 in regulatory T cells is related to the severity of coronary artery disease. Atherosclerosis 228:346-352.
    • (2013) Atherosclerosis , vol.228 , pp. 346-352
    • Jia, L.1    Zhu, L.2    Wang, J.Z.3    Wang, X.J.4    Chen, J.Z.5
  • 10
    • 79955654219 scopus 로고    scopus 로고
    • OxLDL upregulates microRNA-29b, leading to epigenetic modifications of MMP-2/MMP-9 genes: A novel mechanism for cardiovascular diseases
    • Chen KC, Wang YS, Hu CY, Chang WC, Liao YC, et al. (2011) OxLDL upregulates microRNA-29b, leading to epigenetic modifications of MMP-2/MMP-9 genes: a novel mechanism for cardiovascular diseases. FASEB J 25:1718-1728.
    • (2011) FASEB J , vol.25 , pp. 1718-1728
    • Chen, K.C.1    Wang, Y.S.2    Hu, C.Y.3    Chang, W.C.4    Liao, Y.C.5
  • 11
    • 84856171917 scopus 로고    scopus 로고
    • The use of high-throughput technologies to investigate vascular inflammation and atherosclerosis
    • Döring Y, Noels H, Weber C (2012) The use of high-throughput technologies to investigate vascular inflammation and atherosclerosis. Arterioscler Thromb Vasc Biol 32:182-195.
    • (2012) Arterioscler Thromb Vasc Biol , vol.32 , pp. 182-195
    • Döring, Y.1    Noels, H.2    Weber, C.3
  • 12
    • 80052780609 scopus 로고    scopus 로고
    • Coronary artery endothelial transcriptome in vivo: Identification of endoplasmic reticulum stress and enhanced reactive oxygen species by gene connectivity network analysis
    • Civelek M, Manduchi E, Riley RJ, Stoeckert CJ Jr, Davies PF (2011) Coronary artery endothelial transcriptome in vivo: identification of endoplasmic reticulum stress and enhanced reactive oxygen species by gene connectivity network analysis. Circ Cardiovasc Genet 4:243-252.
    • (2011) Circ Cardiovasc Genet , vol.4 , pp. 243-252
    • Civelek, M.1    Manduchi, E.2    Riley, R.J.3    Stoeckert, C.J.4    Davies, P.F.5
  • 15
    • 62549101690 scopus 로고    scopus 로고
    • A systems biology understanding of the synergistic effects of arsenic sulfide and Imatinib in BCR/ABL associated leukemia
    • Zhang QY, Mao JH, Liu P, Huang QH, Lu J, et al. (2009) A systems biology understanding of the synergistic effects of arsenic sulfide and Imatinib in BCR/ABL associated leukemia. Proc Natl Acad Sci U S A 106:3378-3383.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 3378-3383
    • Zhang, Q.Y.1    Mao, J.H.2    Liu, P.3    Huang, Q.H.4    Lu, J.5
  • 16
    • 77957937011 scopus 로고    scopus 로고
    • Quantitative comparison of genome-wide DNA methylation mapping technologies
    • Bock C, Tomazou EM, Brinkman AB, Müller F, Simmer F, et al. (2010) Quantitative comparison of genome-wide DNA methylation mapping technologies. Nat Biotechnol 28:1106-1114.
    • (2010) Nat Biotechnol , vol.28 , pp. 1106-1114
    • Bock, C.1    Tomazou, E.M.2    Brinkman, A.B.3    Müller, F.4    Simmer, F.5
  • 17
    • 84894571860 scopus 로고    scopus 로고
    • Causal analysis approaches in Ingenuity Pathway Analysis
    • Krämer A, Green J, Pollard J Jr, Tugendreich S (2014) Causal analysis approaches in Ingenuity Pathway Analysis. Bioinformatics 30:523-530.
    • (2014) Bioinformatics , vol.30 , pp. 523-530
    • Krämer, A.1    Green, J.2    Pollard, J.3    Tugendreich, S.4
  • 18
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
    • Huang da W, Sherman BT, Lempicki RA (2009) Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res 37:1-13.
    • (2009) Nucleic Acids Res , vol.37 , pp. 1-13
    • Da Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 19
    • 36348946768 scopus 로고    scopus 로고
    • Determination of dual effects of parathyroid hormone on skeletal gene expression in vivo by microarray and network analysis
    • Li X, Liu H, Qin L, Tamasi J, Bergenstock M, et al. (2007) Determination of dual effects of parathyroid hormone on skeletal gene expression in vivo by microarray and network analysis. J Biol Chem 282:33086-33097.
    • (2007) J Biol Chem , vol.282 , pp. 33086-33097
    • Li, X.1    Liu, H.2    Qin, L.3    Tamasi, J.4    Bergenstock, M.5
  • 20
    • 0037245913 scopus 로고    scopus 로고
    • BIND: The biomolecular interaction network database
    • Bader GD, Betel D, Hogue CW (2003) BIND: the Biomolecular Interaction Network Database. Nucleic Acids Res 31:248-250.
    • (2003) Nucleic Acids Res , vol.31 , pp. 248-250
    • Bader, G.D.1    Betel, D.2    Hogue, C.W.3
  • 21
    • 0036088133 scopus 로고    scopus 로고
    • DIP, the Database of Interacting Proteins: A research tool for studying cellular networks of protein interactions
    • Xenarios I, Salwínski L, Duan XJ, Higney P, Kim SM, et al. (2002) DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions. Nucleic Acids Res 30:303-305.
    • (2002) Nucleic Acids Res , vol.30 , pp. 303-305
    • Xenarios, I.1    Salwínski, L.2    Duan, X.J.3    Higney, P.4    Kim, S.M.5
  • 25
    • 84863643651 scopus 로고    scopus 로고
    • Key-PathwayMiner-Detecting case-specific biological pathways by using expression data
    • Alcaraz NM, Kucuk H, Weile J, Wipat A, Baumbach J (2011) Key-PathwayMiner-Detecting case-specific biological pathways by using expression data. Int Math 7:299-313.
    • (2011) Int Math , vol.7 , pp. 299-313
    • Alcaraz, N.M.1    Kucuk, H.2    Weile, J.3    Wipat, A.4    Baumbach, J.5
  • 27
    • 84897489039 scopus 로고    scopus 로고
    • The relationship between DNA methylation, genetic and expression inter-individual variation in untransformed human fibroblasts
    • Epub ahead of print
    • Wagner JR, Busche S, Ge B, Kwan T, Pastinen T, et al. (2014) The relationship between DNA methylation, genetic and expression inter-individual variation in untransformed human fibroblasts. Genome Biol 15:R37. [Epub ahead of print]
    • (2014) Genome Biol , vol.15 , pp. R37
    • Wagner, J.R.1    Busche, S.2    Ge, B.3    Kwan, T.4    Pastinen, T.5
  • 28
    • 85041179355 scopus 로고    scopus 로고
    • Gene expression: Disentangling DNA methylation
    • Muers M (2013) Gene expression: Disentangling DNA methylation. Nat Rev Genet 14:519.
    • (2013) Nat Rev Genet , vol.14 , pp. 519
    • Muers, M.1
  • 30
    • 78751693154 scopus 로고    scopus 로고
    • Replication timingrelated and gene body-specific methylation of active human genes
    • Aran D, Toperoff G, Rosenberg M, Hellman A (2011) Replication timingrelated and gene body-specific methylation of active human genes. Hum Mol Genet 20:670-680.
    • (2011) Hum Mol Genet , vol.20 , pp. 670-680
    • Aran, D.1    Toperoff, G.2    Rosenberg, M.3    Hellman, A.4
  • 31
    • 0036782079 scopus 로고    scopus 로고
    • Hypermethylation of the human telomerase catalytic subunit (hTERT) gene correlates with telomerase activity
    • Guilleret I, Yan P, Grange F, Braunschweig R, Bosman FT, et al. (2002) Hypermethylation of the human telomerase catalytic subunit (hTERT) gene correlates with telomerase activity. Int J Cancer 101:335-341.
    • (2002) Int J Cancer , vol.101 , pp. 335-341
    • Guilleret, I.1    Yan, P.2    Grange, F.3    Braunschweig, R.4    Bosman, F.T.5
  • 32
    • 84867652223 scopus 로고    scopus 로고
    • Genome-wide DNA methylation and gene expression analyses of monozygotic twins discordant for intelligence levels
    • Yu CC, Furukawa M, Kobayashi K, Shikishima C, Cha PC, et al. (2012) Genome-wide DNA methylation and gene expression analyses of monozygotic twins discordant for intelligence levels. PLoS One 7:e47081.
    • (2012) PLoS One , vol.7 , pp. e47081
    • Yu, C.C.1    Furukawa, M.2    Kobayashi, K.3    Shikishima, C.4    Cha, P.C.5
  • 33
    • 80055013127 scopus 로고    scopus 로고
    • The NFKB1 ATTG ins/del polymorphism and risk of coronary heart disease in three independent populations
    • Vogel U, Jensen MK, Due KM, Rimm EB, Wallin H, et al. (2011) The NFKB1 ATTG ins/del polymorphism and risk of coronary heart disease in three independent populations. Atherosclerosis 219:200-204.
    • (2011) Atherosclerosis , vol.219 , pp. 200-204
    • Vogel, U.1    Jensen, M.K.2    Due, K.M.3    Rimm, E.B.4    Wallin, H.5
  • 34
    • 33748928423 scopus 로고    scopus 로고
    • The role of p53 in atherosclerosis
    • Mercer J, Bennett M (2006) The role of p53 in atherosclerosis. Cell Cycle 5:1907-1909.
    • (2006) Cell Cycle , vol.5 , pp. 1907-1909
    • Mercer, J.1    Bennett, M.2
  • 36
    • 0034711140 scopus 로고    scopus 로고
    • Evidence for oxidative activation of c-Myc-dependent nuclear signaling in human coronary smooth muscle cells and in early lesions of Watanabe heritable hyperlipidemic rabbits: Protective effects of vitamin E
    • de Nigris F, Youssef T, Ciafré S, Franconi F, Anania V, et al. (2000) Evidence for oxidative activation of c-Myc-dependent nuclear signaling in human coronary smooth muscle cells and in early lesions of Watanabe heritable hyperlipidemic rabbits: protective effects of vitamin E. Circulation 102:2111-2117.
    • (2000) Circulation , vol.102 , pp. 2111-2117
    • De Nigris, F.1    Youssef, T.2    Ciafré, S.3    Franconi, F.4    Anania, V.5
  • 37
    • 79960015327 scopus 로고    scopus 로고
    • Antagonism of miR-33 in mice promotes reverse cholesterol transport and regression of atherosclerosis
    • Rayner KJ, Sheedy FJ, Esau CC, Hussain FN, Temel RE, et al. (2011) Antagonism of miR-33 in mice promotes reverse cholesterol transport and regression of atherosclerosis. J Clin Invest 121:2921-2931.
    • (2011) J Clin Invest , vol.121 , pp. 2921-2931
    • Rayner, K.J.1    Sheedy, F.J.2    Esau, C.C.3    Hussain, F.N.4    Temel, R.E.5
  • 38
    • 80052142829 scopus 로고    scopus 로고
    • The oral spleen tyrosine kinase inhibitor fostamatinib attenuates inflammation and atherogenesis in low-density lipoprotein receptor-deficient mice
    • Hilgendorf I, Eisele S, Remer I, Schmitz J, Zeschky K, et al. (2011) The oral spleen tyrosine kinase inhibitor fostamatinib attenuates inflammation and atherogenesis in low-density lipoprotein receptor-deficient mice. Arterioscler Thromb Vasc Biol 31:1991-1999.
    • (2011) Arterioscler Thromb Vasc Biol , vol.31 , pp. 1991-1999
    • Hilgendorf, I.1    Eisele, S.2    Remer, I.3    Schmitz, J.4    Zeschky, K.5
  • 39
    • 33947325935 scopus 로고    scopus 로고
    • Role of the CDKN1A/p21, CDKN1C/p57, and CDKN2A/p16 genes in the risk of atherosclerosis and myocardial infarction
    • Rodríguez I, Coto E, Reguero JR, González P, Andrés V, et al. (2007) Role of the CDKN1A/p21, CDKN1C/p57, and CDKN2A/p16 genes in the risk of atherosclerosis and myocardial infarction. Cell Cycle 6:620-625.
    • (2007) Cell Cycle , vol.6 , pp. 620-625
    • Rodríguez, I.1    Coto, E.2    Reguero, J.R.3    González, P.4    Andrés, V.5
  • 40
    • 84862009479 scopus 로고    scopus 로고
    • In hepatocellular carcinoma miR-519d is up-regulated by p53 and DNA hypomethylation and targets CDKN1A/p21, PTEN, AKT3 and TIMP2
    • Fornari F, Milazzo M, Chieco P, Negrini M, Marasco E, et al. (2012) In hepatocellular carcinoma miR-519d is up-regulated by p53 and DNA hypomethylation and targets CDKN1A/p21, PTEN, AKT3 and TIMP2. J Pathol 227:275-285.
    • (2012) J Pathol , vol.227 , pp. 275-285
    • Fornari, F.1    Milazzo, M.2    Chieco, P.3    Negrini, M.4    Marasco, E.5
  • 42
    • 0035421958 scopus 로고    scopus 로고
    • Dephosphorylation of beta2-syntrophin and Ca2+/mu-calpain-mediated cleavage of ICA512 upon stimulation of insulin secretion
    • Ort T, Voronov S, Guo J, Zawalich K, Froehner SC, et al. (2001) Dephosphorylation of beta2-syntrophin and Ca2+/mu-calpain-mediated cleavage of ICA512 upon stimulation of insulin secretion. EMBO J 20:4013-4023.
    • (2001) EMBO J , vol.20 , pp. 4013-4023
    • Ort, T.1    Voronov, S.2    Guo, J.3    Zawalich, K.4    Froehner, S.C.5
  • 43
    • 0037021520 scopus 로고    scopus 로고
    • Increased ubiquitin immunoreactivity in unstable atherosclerotic plaques associated with acute coronary syndromes
    • Herrmann J, Edwards WD, Holmes DR Jr, Shogren KL, Lerman LO, et al. (2002) Increased ubiquitin immunoreactivity in unstable atherosclerotic plaques associated with acute coronary syndromes. J Am Coll Cardiol 40:1919-1927.
    • (2002) J Am Coll Cardiol , vol.40 , pp. 1919-1927
    • Herrmann, J.1    Edwards, W.D.2    Holmes, D.R.3    Shogren, K.L.4    Lerman, L.O.5
  • 45
    • 34948873055 scopus 로고    scopus 로고
    • The proteasome inhibitor lactacystin attenuates growth and migration of vascular smooth muscle cells and limits the response to arterial injury
    • Barringhaus KG, Matsumura ME (2007) The proteasome inhibitor lactacystin attenuates growth and migration of vascular smooth muscle cells and limits the response to arterial injury. Exp Clin Cardiol 12:119-124.
    • (2007) Exp Clin Cardiol , vol.12 , pp. 119-124
    • Barringhaus, K.G.1    Matsumura, M.E.2
  • 46
    • 77649309347 scopus 로고    scopus 로고
    • Preventive effect of a proteasome inhibitor on the formation of accelerated atherosclerosis in rabbits with uremia
    • Feng B, Zhang Y, Mu J, Ye Z, Zeng W, et al. (2010) Preventive effect of a proteasome inhibitor on the formation of accelerated atherosclerosis in rabbits with uremia. J Cardiovasc Pharmacol 55:129-138.
    • (2010) J Cardiovasc Pharmacol , vol.55 , pp. 129-138
    • Feng, B.1    Zhang, Y.2    Mu, J.3    Ye, Z.4    Zeng, W.5
  • 47
    • 72449141470 scopus 로고    scopus 로고
    • Proteasome inhibitor bortezomib promotes a rupture-prone plaque phenotype in ApoE-deficient mice
    • Van Herck JL, De Meyer GR, Martinet W, Bult H, Vrints CJ, et al. (2010) Proteasome inhibitor bortezomib promotes a rupture-prone plaque phenotype in ApoE-deficient mice. Basic Res Cardiol 105:39-50.
    • (2010) Basic Res Cardiol , vol.105 , pp. 39-50
    • Van Herck, J.L.1    De Meyer, G.R.2    Martinet, W.3    Bult, H.4    Vrints, C.J.5
  • 48
    • 37349073383 scopus 로고    scopus 로고
    • Chronic proteasome inhibition contributes to coronary atherosclerosis
    • Herrmann J, Saguner AM, Versari D, Peterson TE, Chade A, et al. (2007) Chronic proteasome inhibition contributes to coronary atherosclerosis. Circ Res 101:865-874.
    • (2007) Circ Res , vol.101 , pp. 865-874
    • Herrmann, J.1    Saguner, A.M.2    Versari, D.3    Peterson, T.E.4    Chade, A.5
  • 49
    • 53049091992 scopus 로고    scopus 로고
    • Possible dual role of ubiquitinproteasome system in the atherosclerotic plaque progression
    • Di Filippo C, Marfella R, D'Amico M (2008) Possible dual role of ubiquitinproteasome system in the atherosclerotic plaque progression. J Am Coll Cardiol 52:1350-1351.
    • (2008) J Am Coll Cardiol , vol.52 , pp. 1350-1351
    • Di Filippo, C.1    Marfella, R.2    D'Amico, M.3


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