-
1
-
-
84881138595
-
Insights into the phylogeny and coding potential of microbial dark matter
-
Rinke C, Schwientek P, Sczyrba A, Ivanova NN, Anderson IJ, et al. (2013) Insights into the phylogeny and coding potential of microbial dark matter. Nature 499: 431-437.
-
(2013)
Nature
, vol.499
, pp. 431-437
-
-
Rinke, C.1
Schwientek, P.2
Sczyrba, A.3
Ivanova, N.N.4
Anderson, I.J.5
-
2
-
-
84864394611
-
Genomic sequencing of uncultured microorganisms from single cells
-
Lasken RS (2012) Genomic sequencing of uncultured microorganisms from single cells. Nat Rev Microbiol 10(9): 631-640.
-
(2012)
Nat Rev Microbiol
, vol.10
, Issue.9
, pp. 631-640
-
-
Lasken, R.S.1
-
3
-
-
1542377296
-
Community structure and metabolism through reconstruction of microbial genomes from the environment
-
Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, et al. (2004) Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428: 37-43.
-
(2004)
Nature
, vol.428
, pp. 37-43
-
-
Tyson, G.W.1
Chapman, J.2
Hugenholtz, P.3
Allen, E.E.4
Ram, R.J.5
-
4
-
-
84888199944
-
Comparative genomics of two candidatus accumulibacter' clades performing biological phosphorus removal
-
Flowers JJ, He SM, Malfatti S, del Rio TG, Tringe SG, et al. (2013) Comparative genomics of two Candidatus Accumulibacter' clades performing biological phosphorus removal. ISME J 7: 2301-2314.
-
(2013)
ISME J
, vol.7
, pp. 2301-2314
-
-
Flowers, J.J.1
He, S.M.2
Malfatti, S.3
Del Rio, T.G.4
Tringe, S.G.5
-
5
-
-
0029025721
-
Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors
-
Bond PL, Hugenholtz P, Keller J, Blackall LL (1995) Bacterial Community Structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors. Appl Environ Microbiol 61(5): 1910-1916.
-
(1995)
Appl Environ Microbiol
, vol.61
, Issue.5
, pp. 1910-1916
-
-
Bond, P.L.1
Hugenholtz, P.2
Keller, J.3
Blackall, L.L.4
-
6
-
-
0034054086
-
Quantification of hyphomicrobium populations in activated sludge from an industrial wastewater treatment system as determined by 16s rrna analysis
-
Layton AC, Karanth PN, Lajoie CA, Meyers AJ, Gregory IR, et al. (2000) Quantification of Hyphomicrobium populations in activated sludge from an Industrial wastewater treatment system as determined by 16S rRNA analysis. Appl Environ Microbiol 66(3): 1167-1174.
-
(2000)
Appl Environ Microbiol
, vol.66
, Issue.3
, pp. 1167-1174
-
-
Layton, A.C.1
Karanth, P.N.2
Lajoie, C.A.3
Meyers, A.J.4
Gregory, I.R.5
-
7
-
-
78149364430
-
Bacterial community changes during bioremediation of aliphatic hydrocarbon- contaminated soil
-
Militon C, Boucher D, Vachelard C, Perchet G, Barra V, et al. (2010) Bacterial community changes during bioremediation of aliphatic hydrocarbon- contaminated soil. FEMS Microbiol Ecol 74: 669-681.
-
(2010)
FEMS Microbiol Ecol
, vol.74
, pp. 669-681
-
-
Militon, C.1
Boucher, D.2
Vachelard, C.3
Perchet, G.4
Barra, V.5
-
8
-
-
44449094057
-
Abundance and diversity of microbial life in ocean crust
-
Santelli CM, Orcutt BN, Banning E, Bach W, Moyer CL, et al. (2008) Abundance and diversity of microbial life in ocean crust. Nature 453: 653-656.
-
(2008)
Nature
, vol.453
, pp. 653-656
-
-
Santelli, C.M.1
Orcutt, B.N.2
Banning, E.3
Bach, W.4
Moyer, C.L.5
-
9
-
-
61449227230
-
Bacterial diversity in surface sediments from the pacific arctic ocean
-
Li H, Yu Y, Luo W, Zeng Y, Chen B (2009) Bacterial diversity in surface sediments from the Pacific Arctic Ocean. Extremophiles 13(2): 233-246.
-
(2009)
Extremophiles
, vol.13
, Issue.2
, pp. 233-246
-
-
Li, H.1
Yu, Y.2
Luo, W.3
Zeng, Y.4
Chen, B.5
-
10
-
-
84857121586
-
Assessing the complex sponge microbiota: Core, variable and species-specific bacterial communities in marine sponges
-
Schmitt S, Tsai P, Bell J, Fromont J, Ilan M, et al. (2012) Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges. ISME J 6: 564-576.
-
(2012)
ISME J
, vol.6
, pp. 564-576
-
-
Schmitt, S.1
Tsai, P.2
Bell, J.3
Fromont, J.4
Ilan, M.5
-
11
-
-
84907936186
-
Kartchner caverns: Habitat scale community diversity and function in a carbonate cave
-
The University of Arizona
-
Ortiz-Ortiz M (2012) Kartchner caverns: habitat scale community diversity and function in a carbonate cave. Thesis. The University of Arizona. 65: 99.
-
(2012)
Thesis.
, vol.65
, pp. 99
-
-
Ortiz-Ortiz, M.1
-
12
-
-
84861345451
-
454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants
-
Zhang T, Shao MF, Ye L (2012) 454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants. ISME J 6: 1137-1147.
-
(2012)
ISME J
, vol.6
, pp. 1137-1147
-
-
Zhang, T.1
Shao, M.F.2
Ye, L.3
-
13
-
-
84905392797
-
Taxonomic relatedness shapes bacterial assembly in activated sludge of globally distributed wastewater treatment plants
-
Ju F, Xia Y, Guo F, Wang ZP, Zhang T (2014) Taxonomic relatedness shapes bacterial assembly in activated sludge of globally distributed wastewater treatment plants. Environmental Microbiology DOI: 10.1111/1462-2920.12355.
-
(2014)
Environmental Microbiology
-
-
Ju, F.1
Xia, Y.2
Guo, F.3
Wang, Z.P.4
Zhang, T.5
-
14
-
-
79952771096
-
Bacterial community structures are unique and resilient in full-scale bioenergy systems
-
Werner JJ, Knights D, Garcia ML, Scalfone NB, Smith S, et al. (2010) Bacterial community structures are unique and resilient in full-scale bioenergy systems. PNAS 108(10): 4158-4163.
-
(2010)
PNAS
, vol.108
, Issue.10
, pp. 4158-4163
-
-
Werner, J.J.1
Knights, D.2
Garcia, M.L.3
Scalfone, N.B.4
Smith, S.5
-
15
-
-
79251587455
-
Metagenomic discovery of biomass-degrading genes and genomes from cow rumen
-
Hess M, Sczyrba A, Egan R, Kim TW, Chokhawala H, et al. (2011) Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science 331: 463-467.
-
(2011)
Science
, vol.331
, pp. 463-467
-
-
Hess, M.1
Sczyrba, A.2
Egan, R.3
Kim, T.W.4
Chokhawala, H.5
-
16
-
-
84888774923
-
Genomes from metagenomics
-
Sharon I, Banfield JF (2013) Genomes from metagenomics. Science 342: 1057-1058.
-
(2013)
Science
, vol.342
, pp. 1057-1058
-
-
Sharon, I.1
Banfield, J.F.2
-
17
-
-
33645741019
-
Deciphering the evolution and metabolism of an anammox bacterium from a community genome
-
Strous M, Pelletier E, Mangenot S, Rattei T, Lehner A, et al. (2006) Deciphering the evolution and metabolism of an anammox bacterium from a community genome. Nature 440: 790-794.
-
(2006)
Nature
, vol.440
, pp. 790-794
-
-
Strous, M.1
Pelletier, E.2
Mangenot, S.3
Rattei, T.4
Lehner, A.5
-
18
-
-
84877765843
-
Biases during DNA extraction of activated sludge samples revealed by high throughput sequencing
-
Guo F, Zhang T (2013) Biases during DNA extraction of activated sludge samples revealed by high throughput sequencing. Appl Microbiol Biotechnol 97:4607-4616.
-
(2013)
Appl Microbiol Biotechnol
, vol.97
, pp. 4607-4616
-
-
Guo, F.1
Zhang, T.2
-
19
-
-
84879678051
-
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
-
Albertsen M, Hugenholtz P, Skarshewski A, Nielsen KL, Tyson GW, et al. (2013) Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes. Nat Biotechnol 31: 533-538.
-
(2013)
Nat Biotechnol
, vol.31
, pp. 533-538
-
-
Albertsen, M.1
Hugenholtz, P.2
Skarshewski, A.3
Nielsen, K.L.4
Tyson, G.W.5
-
20
-
-
84863049441
-
Metacluster 4.0: A novel binning algorithm for NGS reads and huge number of species
-
Wang Y, Leung HCM, Yiu S, Chin FYL (2012) MetaCluster 4.0: a novel binning algorithm for NGS reads and huge number of species. J Comput Biol 19: 241-249.
-
(2012)
J Comput Biol
, vol.19
, pp. 241-249
-
-
Wang, Y.1
Leung, H.C.M.2
Yiu, S.3
Chin, F.Y.L.4
-
21
-
-
77955902981
-
Ab initio gene identification in metagenomic sequences
-
Zhu W, Lomsadze A, Borodovsky M (2010) Ab initio gene identification in metagenomic sequences. Nucleic Acids Res 38(12): e132.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.12
, pp. e132
-
-
Zhu, W.1
Lomsadze, A.2
Borodovsky, M.3
-
22
-
-
84875031108
-
Towards a metagenomic understanding on enhanced biomethane production from waste activated sludge after pH 10 pretreatment
-
Wong MT, Zhang D, Li J, Hui RK, Tun HM, et al. (2013) Towards a metagenomic understanding on enhanced biomethane production from waste activated sludge after pH 10 pretreatment. Biotechnol Biofuels 6(1): 38.
-
(2013)
Biotechnol Biofuels
, vol.6
, Issue.1
, pp. 38
-
-
Wong, M.T.1
Zhang, D.2
Li, J.3
Hui, R.K.4
Tun, H.M.5
-
23
-
-
84875686111
-
Construction of customized sub-databases from NCBI-nr database for rapid annotation of huge metagenomic datasets using a combined BLAST and MEGAN approach
-
Yu K, Zhang T (2013) Construction of customized sub-databases from NCBI-nr database for rapid annotation of huge metagenomic datasets using a combined BLAST and MEGAN Approach. PLoS ONE 8(4): e59831.
-
(2013)
PLoS ONE
, vol.8
, Issue.4
, pp. e59831
-
-
Yu, K.1
Zhang, T.2
-
24
-
-
0031813130
-
Pfam: Ultiple sequence alignments and hmm-profiles of protein domains
-
Sonnhammer EL, Eddy SR, Birney E, Bateman A, Durbin R (1998) Pfam: ultiple sequence alignments and HMM-profiles of protein domains. Nucleic Acids Res 26(1): 320-322.
-
(1998)
Nucleic Acids Res
, vol.26
, Issue.1
, pp. 320-322
-
-
Sonnhammer, E.L.1
Eddy, S.R.2
Birney, E.3
Bateman, A.4
Durbin, R.5
-
25
-
-
77955179934
-
Mltreemap-accurate maximum likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies
-
Stark M, Berger SA, Stamatakis A, von Mering C (2010) MLTreeMap-accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies. BMC Genomics 11: 461.
-
(2010)
BMC Genomics
, vol.11
, pp. 461
-
-
Stark, M.1
Berger, S.A.2
Stamatakis, A.3
Von Mering, C.4
-
26
-
-
84861342496
-
Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage
-
Dupont CL, Rusch DB, Yooseph S, Lombardo MJ, Richter RA, et al. (2012) Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage. ISME J 6: 1186-1199.
-
(2012)
ISME J
, vol.6
, pp. 1186-1199
-
-
Dupont, C.L.1
Rusch, D.B.2
Yooseph, S.3
Lombardo, M.J.4
Richter, R.A.5
-
27
-
-
84907936185
-
-
Hunt DE, David LA, Gevers D, Preheim SP, Alm EJ, et al. (2008) Resource partitioning and sympatric differentiation among closely related Bacterioplankton. 320: 1080-1085.
-
(2008)
Resource partitioning and sympatric differentiation among closely related Bacterioplankton
, vol.320
, pp. 1080-1085
-
-
Hunt, D.E.1
David, L.A.2
Gevers, D.3
Preheim, S.P.4
Alm, E.J.5
-
28
-
-
0033607024
-
Ubiquitous dispersal of microbial species
-
Finlay B, Clark K (1999) Ubiquitous dispersal of microbial species. Nature 400: 828-828.
-
(1999)
Nature
, vol.400
, pp. 828-828
-
-
Finlay, B.1
Clark, K.2
-
29
-
-
0842346285
-
Molecular cloning, nucleotide sequencing and expression of genes encoding a cytochrome p450 system involved in secondary amine utilization in mycobacterium sp. Strain RP1
-
Trigui MPS, Truffaut N, Thomas D, Poupin P (2004) Molecular cloning, nucleotide sequencing and expression of genes encoding a cytochrome P450 system involved in secondary amine utilization in Mycobacterium sp. strain RP1. Res Microbiol 155: 1-9.
-
(2004)
Res Microbiol
, vol.155
, pp. 1-9
-
-
Trigui, M.P.S.1
Truffaut, N.2
Thomas, D.3
Poupin, P.4
-
30
-
-
67649413349
-
Autotrophic carbon dioxide assimilation in thermoproteales revisited
-
Ramos-Vera WH, Berg IA, Fuchs G (2009) Autotrophic carbon dioxide assimilation in Thermoproteales revisited. J Bacteriol 191: 4286-4297.
-
(2009)
J Bacteriol
, vol.191
, pp. 4286-4297
-
-
Ramos-Vera, W.H.1
Berg, I.A.2
Fuchs, G.3
-
31
-
-
79953201555
-
2 fixation pathways
-
2 fixation pathways. Appl Environ Microbiol 77(6): 1925-1936.
-
(2011)
Appl Environ Microbiol
, vol.77
, Issue.6
, pp. 1925-1936
-
-
Berg, I.A.1
-
32
-
-
79958260330
-
Anaplerotic function of phosphoenolpyruvate carboxylase in bradyrhizobium japonicum usda110
-
Dunn MF (2011) Anaplerotic function of phosphoenolpyruvate carboxylase in Bradyrhizobium japonicum USDA110. Curr Microbiol 62: 1782-1788.
-
(2011)
Curr Microbiol
, vol.62
, pp. 1782-1788
-
-
Dunn, M.F.1
-
34
-
-
0242300102
-
Mixotrophs combine resource use to outcompete specialists: Implications for aquatic food webs
-
Tittel J, Bissinger V, Zippel B, Gaedke U, Bell E, et al. (2003) Mixotrophs combine resource use to outcompete specialists: Implications for aquatic food webs. PNAS 100(22): 12776-12781.
-
(2003)
PNAS
, vol.100
, Issue.22
, pp. 12776-12781
-
-
Tittel, J.1
Bissinger, V.2
Zippel, B.3
Gaedke, U.4
Bell, E.5
-
35
-
-
51649123143
-
High bacterivory by the smallest phytoplankton in the north atlantic ocean
-
Zubkov MV, Tarran GA (2008) High bacterivory by the smallest phytoplankton in the North Atlantic Ocean. Nature 455: 224-227.
-
(2008)
Nature
, vol.455
, pp. 224-227
-
-
Zubkov, M.V.1
Tarran, G.A.2
-
37
-
-
0037565104
-
The SmtB/ArsR family of metalloregulatory transcriptional repressors: Structural insights into prokaryoticmetal resistance
-
Busenlehner LS, Pennella MA, Giedroc DP (2003) The SmtB/ArsR family of metalloregulatory transcriptional repressors: structural insights into prokaryoticmetal resistance. FEMS Microbiol Rev 17: 131-143.
-
(2003)
FEMS Microbiol Rev
, vol.17
, pp. 131-143
-
-
Busenlehner, L.S.1
Pennella, M.A.2
Giedroc, D.P.3
|