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Volumn 6, Issue 6, 2012, Pages 1137-1147

454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants

Author keywords

activated sludge; bacteria; cluster analysis; core population; PCoA; pyrosequencing

Indexed keywords

BACTERIAL DNA; RNA 16S;

EID: 84861345451     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2011.188     Document Type: Article
Times cited : (1062)

References (33)
  • 1
    • 0035073389 scopus 로고    scopus 로고
    • Dechloromonas agitata gen. Nov., Sp. Nov. And Dechlorosoma suillum gen. nov., sp. nov., two novel environmentally dominant (per)chloratereducing bacteria and their phylogenetic position
    • Achenbach LA, Michaelidou U, Bruce RA, Fryman J, Coates JD. (2001). Dechloromonas agitata gen. nov., sp. nov. and Dechlorosoma suillum gen. nov., sp. nov., two novel environmentally dominant (per)chloratereducing bacteria and their phylogenetic position. Int J Syst Evol Microbiol 51: 527-533.
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 527-533
    • Achenbach, L.A.1    Michaelidou, U.2    Bruce, R.A.3    Fryman, J.4    Coates, J.D.5
  • 2
    • 77954219042 scopus 로고    scopus 로고
    • Pyrosequencing of the 16S rRNA gene to reveal bacterial pathogen diversity in biosolids
    • Bibby K, Viau E, Peccia J. (2010). Pyrosequencing of the 16S rRNA gene to reveal bacterial pathogen diversity in biosolids. Water Res 44: 4252-4260.
    • (2010) Water Res , vol.44 , pp. 4252-4260
    • Bibby, K.1    Viau, E.2    Peccia, J.3
  • 3
    • 69249109724 scopus 로고    scopus 로고
    • Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine
    • Claesson M, O'Sullivan O, Wang Q, Nikkila J, Marchesi J, Smidt H et al. (2009). Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine. PloS One 4: E6669.
    • (2009) PloS One , vol.4
    • Claesson, M.1    O'Sullivan, O.2    Wang, Q.3    Nikkila, J.4    Marchesi, J.5    Smidt, H.6
  • 4
    • 58149200948 scopus 로고    scopus 로고
    • The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis
    • Cole JR, Wang Q, Cardenas E, Fish J, Chai B, Farris RJ et al. (2009). The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37: D141-D145.
    • (2009) Nucleic Acids Res , vol.37
    • Cole, J.R.1    Wang, Q.2    Cardenas, E.3    Fish, J.4    Chai, B.5    Farris, R.J.6
  • 5
    • 0002051544 scopus 로고
    • The genus Zoogloea
    • Balows A, Trüper HG, Dworkin M, Harder W, Schleifer K-H (eds). Springer-Verlag: New York, NY
    • Dugan PR, Stoner DL, Pickrum HM. (1992). The genus Zoogloea. In: The prokaryotes. Balows A, Trüper HG, Dworkin M, Harder W, Schleifer K-H (eds). Springer-Verlag: New York, NY, pp 3952-3964.
    • (1992) The Prokaryotes , pp. 3952-3964
    • Dugan, P.R.1    Stoner, D.L.2    Pickrum, H.M.3
  • 6
    • 56649124715 scopus 로고    scopus 로고
    • The influence of sex, handedness, and washing on the diversity of hand surface bacteria
    • Fierer N, Hamady M, Lauber CL, Knight R. (2008). The influence of sex, handedness, and washing on the diversity of hand surface bacteria. Proc Natl Acad Sci USA 105: 17994.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 17994
    • Fierer, N.1    Hamady, M.2    Lauber, C.L.3    Knight, R.4
  • 7
    • 79952006773 scopus 로고    scopus 로고
    • Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
    • Haas BJ, Gevers D, Earl AM, Feldgarden M, Ward DV, Giannoukos G et al. (2011). Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Res 21: 494-504.
    • (2011) Genome Res , vol.21 , pp. 494-504
    • Haas, B.J.1    Gevers, D.2    Earl, A.M.3    Feldgarden, M.4    Ward, D.V.5    Giannoukos, G.6
  • 8
    • 73449128271 scopus 로고    scopus 로고
    • Fast UniFrac: Facilitating high-Throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
    • Hamady M, Lozupone C, Knight R. (2010). Fast UniFrac: Facilitating high-Throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data. ISME J 4: 17-27.
    • (2010) ISME J , vol.4 , pp. 17-27
    • Hamady, M.1    Lozupone, C.2    Knight, R.3
  • 9
    • 72649084530 scopus 로고    scopus 로고
    • Polymerase chain reaction primers miss half of rRNA microbial diversity
    • Hong S, Bunge J, Leslin C, Jeon S, Epstein S. (2009). Polymerase chain reaction primers miss half of rRNA microbial diversity. ISME J 3: 1365-1373.
    • (2009) ISME J , vol.3 , pp. 1365-1373
    • Hong, S.1    Bunge, J.2    Leslin, C.3    Jeon, S.4    Epstein, S.5
  • 10
    • 77955251092 scopus 로고    scopus 로고
    • Ironing out the wrinkles in the rare biosphere through improved OTU clustering
    • Huse SM, Welch DM, Morrison HG, Sogin ML. (2010). Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environ Microbiol 12: 1889-1898.
    • (2010) Environ Microbiol , vol.12 , pp. 1889-1898
    • Huse, S.M.1    Welch, D.M.2    Morrison, H.G.3    Sogin, M.L.4
  • 11
    • 76649144778 scopus 로고    scopus 로고
    • Bacterial communities in the rhizosphere of biofuel crops grown on marginal lands as evaluated by 16S rRNA gene pyrosequences
    • Jesus EC, Susilawati E, Smith S, Wang Q, Chai B, Farris R et al. (2010). Bacterial communities in the rhizosphere of biofuel crops grown on marginal lands as evaluated by 16S rRNA gene pyrosequences. BioEnergy Res 3: 20-27.
    • (2010) BioEnergy Res , vol.3 , pp. 20-27
    • Jesus, E.C.1    Susilawati, E.2    Smith, S.3    Wang, Q.4    Chai, B.5    Farris, R.6
  • 12
    • 67651247607 scopus 로고    scopus 로고
    • Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale
    • Lauber CL, Hamady M, Knight R, Fierer N. (2009). Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Appl Environ Microbiol 75: 5111.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 5111
    • Lauber, C.L.1    Hamady, M.2    Knight, R.3    Fierer, N.4
  • 13
    • 14744285838 scopus 로고    scopus 로고
    • Microbial community analysis and performance of a phosphateremoving activated sludge
    • Liu Y, Zhang T, Fang HHP. (2005). Microbial community analysis and performance of a phosphateremoving activated sludge. Bioresour Technol 96: 1205-1214.
    • (2005) Bioresour Technol , vol.96 , pp. 1205-1214
    • Liu, Y.1    Zhang, T.2    Fang, H.H.P.3
  • 14
    • 29144464937 scopus 로고    scopus 로고
    • Unifrac: A new phylogenetic method for comparing microbial communities
    • Lozupone CA, Knight R. (2005). Unifrac: A new phylogenetic method for comparing microbial communities. Appl Envrion Microbiol 71: 8228-8235.
    • (2005) Appl Envrion Microbiol , vol.71 , pp. 8228-8235
    • Lozupone, C.A.1    Knight, R.2
  • 15
    • 77649110123 scopus 로고    scopus 로고
    • Diversity and population structure of sewage derived microorganisms in wastewater treatment plant influent
    • McLellan S, Huse S, Mueller Spitz S, Andreishcheva E, Sogin M. (2010). Diversity and population structure of sewage derived microorganisms in wastewater treatment plant influent. Environ Microbiol 12: 378-392.
    • (2010) Environ Microbiol , vol.12 , pp. 378-392
    • McLellan, S.1    Huse, S.2    Mueller Spitz, S.3    Andreishcheva, E.4    Sogin, M.5
  • 16
    • 78649887273 scopus 로고    scopus 로고
    • Composition and energy harvesting capacity of the gut microbiota: Relationship to diet, obesity and time in mouse models
    • Murphy E, Cotter P, Healy S, Marques T, O'Sullivan O, Fouhy F et al. (2010). Composition and energy harvesting capacity of the gut microbiota: Relationship to diet, obesity and time in mouse models. Gut 59: 1635-1642.
    • (2010) Gut , vol.59 , pp. 1635-1642
    • Murphy, E.1    Cotter, P.2    Healy, S.3    Marques, T.4    O'Sullivan, O.5    Fouhy, F.6
  • 17
    • 34047240607 scopus 로고    scopus 로고
    • Query-dependent banding (QDB) for faster RNA similarity searches
    • Nawrocki EP, Eddy SR. (2007). Query-dependent banding (QDB) for faster RNA similarity searches. PLoS Comput Biol 3: E56.
    • (2007) PLoS Comput Biol , vol.3
    • Nawrocki, E.P.1    Eddy, S.R.2
  • 19
    • 33747888910 scopus 로고    scopus 로고
    • Hoeflea alexandrii sp. nov., isolated from the toxic dinoflagellate Alexandrium minutum AL1V
    • Palacios L, Arahal D, Reguera B, Marin I. (2006). Hoeflea alexandrii sp. nov., isolated from the toxic dinoflagellate Alexandrium minutum AL1V. Int J Syst Evol Microbiol 56: 1991.
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 1991
    • Palacios, L.1    Arahal, D.2    Reguera, B.3    Marin, I.4
  • 20
    • 79951813933 scopus 로고    scopus 로고
    • Vertical stratification of microbial communities in the Red Sea revealed by 16S rDNA pyrosequencing
    • Qian P, Wang Y, Lee O, Lau S, Yang J, Lafi F et al. (2010). Vertical stratification of microbial communities in the Red Sea revealed by 16S rDNA pyrosequencing. ISME J 5: 507-518.
    • (2010) ISME J , vol.5 , pp. 507-518
    • Qian, P.1    Wang, Y.2    Lee, O.3    Lau, S.4    Yang, J.5    Lafi, F.6
  • 21
    • 77950251400 scopus 로고    scopus 로고
    • A human gut microbial gene catalogue established by metagenomic sequencing
    • Qin J, Li R, Raes J, ArumugamM,BurgdorfKS, ManichanhC et al. (2010). A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464: 59-65.
    • (2010) Nature , vol.464 , pp. 59-65
    • Qin, J.1    Li, R.2    Raes, J.3    Arumugam, M.4    Burgdorf, K.S.5    Manichanh, C.6
  • 22
    • 34547800097 scopus 로고    scopus 로고
    • Pyrosequencing enumerates and contrasts soil microbial diversity
    • Roesch L, Fulthorpe R, Riva A, Casella G, Hadwin A, Kent A et al. (2007). Pyrosequencing enumerates and contrasts soil microbial diversity. ISME J 1: 283-290.
    • (2007) ISME J , vol.1 , pp. 283-290
    • Roesch, L.1    Fulthorpe, R.2    Riva, A.3    Casella, G.4    Hadwin, A.5    Kent, A.6
  • 25
    • 53649106195 scopus 로고    scopus 로고
    • Next-generation DNA sequencing
    • Shendure J, Ji H. (2008). Next-generation DNA sequencing. Nat Biotechnol 26: 1135-1145.
    • (2008) Nat Biotechnol , vol.26 , pp. 1135-1145
    • Shendure, J.1    Ji, H.2
  • 26
    • 0030741576 scopus 로고    scopus 로고
    • Phylogenetic analysis and in situ identification of bacteria in activated sludge
    • Snaidr J, Amann R, Huber I, Ludwig W, Schleifer KH. (1997). Phylogenetic analysis and in situ identification of bacteria in activated sludge. Appl Environ Microbiol 63: 2884-2896.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 2884-2896
    • Snaidr, J.1    Amann, R.2    Huber, I.3    Ludwig, W.4    Schleifer, K.H.5
  • 27
    • 33747073504 scopus 로고    scopus 로고
    • Microbial diversity in the deep sea and the underexplored 'rare biosphere
    • Sogin M, Morrison H, Huber J, Welch D, Huse S, Neal P et al. (2006). Microbial diversity in the deep sea and the underexplored 'rare biosphere'. Proc Nat Acad Sci 103: 12115.
    • (2006) Proc Nat Acad Sci , vol.103 , pp. 12115
    • Sogin, M.1    Morrison, H.2    Huber, J.3    Welch, D.4    Huse, S.5    Neal, P.6
  • 29
    • 0036624935 scopus 로고    scopus 로고
    • Bacterial community composition and function in sewage treatment systems
    • Wagner M, Loy A. (2002). Bacterial community composition and function in sewage treatment systems. Curr Opin Biotechnol 13: 218-227.
    • (2002) Curr Opin Biotechnol , vol.13 , pp. 218-227
    • Wagner, M.1    Loy, A.2
  • 30
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q, Garrity G, Tiedje J, Cole J. (2007). Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.2    Tiedje, J.3    Cole, J.4
  • 31
    • 70350527180 scopus 로고    scopus 로고
    • Conservative fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies
    • Wang Y, Qian P. (2009). Conservative fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies. PloS One 4: E7401.
    • (2009) PloS One , vol.4
    • Wang, Y.1    Qian, P.2
  • 32
    • 77957346491 scopus 로고    scopus 로고
    • Bacterial community structure in geographically distributed biological wastewater treatment reactors
    • Xia S, Duan L, Song Y, Li J, Piceno Y, Andersen G et al. (2010). Bacterial community structure in geographically distributed biological wastewater treatment reactors. Environ Sci Technol 44: 1043-1045.
    • (2010) Environ Sci Technol , vol.44 , pp. 1043-1045
    • Xia, S.1    Duan, L.2    Song, Y.3    Li, J.4    Piceno, Y.5    Andersen, G.6
  • 33
    • 77953990221 scopus 로고    scopus 로고
    • Isolation, characterization, and abundance of filamentous members of Caldilineae in activated sludge
    • Yoon DN, Park SJ, Kim SJ, Jeon CO, Chae JC, Rhee SK. (2010). Isolation, characterization, and abundance of filamentous members of Caldilineae in activated sludge. J Microbiol 48: 275-283.
    • (2010) J Microbiol , vol.48 , pp. 275-283
    • Yoon, D.N.1    Park, S.J.2    Kim, S.J.3    Jeon, C.O.4    Chae, J.C.5    Rhee, S.K.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.