-
1
-
-
0035073389
-
Dechloromonas agitata gen. Nov., Sp. Nov. And Dechlorosoma suillum gen. nov., sp. nov., two novel environmentally dominant (per)chloratereducing bacteria and their phylogenetic position
-
Achenbach LA, Michaelidou U, Bruce RA, Fryman J, Coates JD. (2001). Dechloromonas agitata gen. nov., sp. nov. and Dechlorosoma suillum gen. nov., sp. nov., two novel environmentally dominant (per)chloratereducing bacteria and their phylogenetic position. Int J Syst Evol Microbiol 51: 527-533.
-
(2001)
Int J Syst Evol Microbiol
, vol.51
, pp. 527-533
-
-
Achenbach, L.A.1
Michaelidou, U.2
Bruce, R.A.3
Fryman, J.4
Coates, J.D.5
-
2
-
-
77954219042
-
Pyrosequencing of the 16S rRNA gene to reveal bacterial pathogen diversity in biosolids
-
Bibby K, Viau E, Peccia J. (2010). Pyrosequencing of the 16S rRNA gene to reveal bacterial pathogen diversity in biosolids. Water Res 44: 4252-4260.
-
(2010)
Water Res
, vol.44
, pp. 4252-4260
-
-
Bibby, K.1
Viau, E.2
Peccia, J.3
-
3
-
-
69249109724
-
Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine
-
Claesson M, O'Sullivan O, Wang Q, Nikkila J, Marchesi J, Smidt H et al. (2009). Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine. PloS One 4: E6669.
-
(2009)
PloS One
, vol.4
-
-
Claesson, M.1
O'Sullivan, O.2
Wang, Q.3
Nikkila, J.4
Marchesi, J.5
Smidt, H.6
-
4
-
-
58149200948
-
The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis
-
Cole JR, Wang Q, Cardenas E, Fish J, Chai B, Farris RJ et al. (2009). The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37: D141-D145.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
Chai, B.5
Farris, R.J.6
-
5
-
-
0002051544
-
The genus Zoogloea
-
Balows A, Trüper HG, Dworkin M, Harder W, Schleifer K-H (eds). Springer-Verlag: New York, NY
-
Dugan PR, Stoner DL, Pickrum HM. (1992). The genus Zoogloea. In: The prokaryotes. Balows A, Trüper HG, Dworkin M, Harder W, Schleifer K-H (eds). Springer-Verlag: New York, NY, pp 3952-3964.
-
(1992)
The Prokaryotes
, pp. 3952-3964
-
-
Dugan, P.R.1
Stoner, D.L.2
Pickrum, H.M.3
-
6
-
-
56649124715
-
The influence of sex, handedness, and washing on the diversity of hand surface bacteria
-
Fierer N, Hamady M, Lauber CL, Knight R. (2008). The influence of sex, handedness, and washing on the diversity of hand surface bacteria. Proc Natl Acad Sci USA 105: 17994.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 17994
-
-
Fierer, N.1
Hamady, M.2
Lauber, C.L.3
Knight, R.4
-
7
-
-
79952006773
-
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
-
Haas BJ, Gevers D, Earl AM, Feldgarden M, Ward DV, Giannoukos G et al. (2011). Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Res 21: 494-504.
-
(2011)
Genome Res
, vol.21
, pp. 494-504
-
-
Haas, B.J.1
Gevers, D.2
Earl, A.M.3
Feldgarden, M.4
Ward, D.V.5
Giannoukos, G.6
-
8
-
-
73449128271
-
Fast UniFrac: Facilitating high-Throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
-
Hamady M, Lozupone C, Knight R. (2010). Fast UniFrac: Facilitating high-Throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data. ISME J 4: 17-27.
-
(2010)
ISME J
, vol.4
, pp. 17-27
-
-
Hamady, M.1
Lozupone, C.2
Knight, R.3
-
9
-
-
72649084530
-
Polymerase chain reaction primers miss half of rRNA microbial diversity
-
Hong S, Bunge J, Leslin C, Jeon S, Epstein S. (2009). Polymerase chain reaction primers miss half of rRNA microbial diversity. ISME J 3: 1365-1373.
-
(2009)
ISME J
, vol.3
, pp. 1365-1373
-
-
Hong, S.1
Bunge, J.2
Leslin, C.3
Jeon, S.4
Epstein, S.5
-
10
-
-
77955251092
-
Ironing out the wrinkles in the rare biosphere through improved OTU clustering
-
Huse SM, Welch DM, Morrison HG, Sogin ML. (2010). Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environ Microbiol 12: 1889-1898.
-
(2010)
Environ Microbiol
, vol.12
, pp. 1889-1898
-
-
Huse, S.M.1
Welch, D.M.2
Morrison, H.G.3
Sogin, M.L.4
-
11
-
-
76649144778
-
Bacterial communities in the rhizosphere of biofuel crops grown on marginal lands as evaluated by 16S rRNA gene pyrosequences
-
Jesus EC, Susilawati E, Smith S, Wang Q, Chai B, Farris R et al. (2010). Bacterial communities in the rhizosphere of biofuel crops grown on marginal lands as evaluated by 16S rRNA gene pyrosequences. BioEnergy Res 3: 20-27.
-
(2010)
BioEnergy Res
, vol.3
, pp. 20-27
-
-
Jesus, E.C.1
Susilawati, E.2
Smith, S.3
Wang, Q.4
Chai, B.5
Farris, R.6
-
12
-
-
67651247607
-
Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale
-
Lauber CL, Hamady M, Knight R, Fierer N. (2009). Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Appl Environ Microbiol 75: 5111.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 5111
-
-
Lauber, C.L.1
Hamady, M.2
Knight, R.3
Fierer, N.4
-
13
-
-
14744285838
-
Microbial community analysis and performance of a phosphateremoving activated sludge
-
Liu Y, Zhang T, Fang HHP. (2005). Microbial community analysis and performance of a phosphateremoving activated sludge. Bioresour Technol 96: 1205-1214.
-
(2005)
Bioresour Technol
, vol.96
, pp. 1205-1214
-
-
Liu, Y.1
Zhang, T.2
Fang, H.H.P.3
-
14
-
-
29144464937
-
Unifrac: A new phylogenetic method for comparing microbial communities
-
Lozupone CA, Knight R. (2005). Unifrac: A new phylogenetic method for comparing microbial communities. Appl Envrion Microbiol 71: 8228-8235.
-
(2005)
Appl Envrion Microbiol
, vol.71
, pp. 8228-8235
-
-
Lozupone, C.A.1
Knight, R.2
-
15
-
-
77649110123
-
Diversity and population structure of sewage derived microorganisms in wastewater treatment plant influent
-
McLellan S, Huse S, Mueller Spitz S, Andreishcheva E, Sogin M. (2010). Diversity and population structure of sewage derived microorganisms in wastewater treatment plant influent. Environ Microbiol 12: 378-392.
-
(2010)
Environ Microbiol
, vol.12
, pp. 378-392
-
-
McLellan, S.1
Huse, S.2
Mueller Spitz, S.3
Andreishcheva, E.4
Sogin, M.5
-
16
-
-
78649887273
-
Composition and energy harvesting capacity of the gut microbiota: Relationship to diet, obesity and time in mouse models
-
Murphy E, Cotter P, Healy S, Marques T, O'Sullivan O, Fouhy F et al. (2010). Composition and energy harvesting capacity of the gut microbiota: Relationship to diet, obesity and time in mouse models. Gut 59: 1635-1642.
-
(2010)
Gut
, vol.59
, pp. 1635-1642
-
-
Murphy, E.1
Cotter, P.2
Healy, S.3
Marques, T.4
O'Sullivan, O.5
Fouhy, F.6
-
17
-
-
34047240607
-
Query-dependent banding (QDB) for faster RNA similarity searches
-
Nawrocki EP, Eddy SR. (2007). Query-dependent banding (QDB) for faster RNA similarity searches. PLoS Comput Biol 3: E56.
-
(2007)
PLoS Comput Biol
, vol.3
-
-
Nawrocki, E.P.1
Eddy, S.R.2
-
18
-
-
77956578390
-
Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome
-
Nossa CW, Oberdorf WE, Yang L, Aas JA, Paster BJ, Desantis TZ et al. (2010). Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome. World J Gastroenterol 16: 4135-4144.
-
(2010)
World J Gastroenterol
, vol.16
, pp. 4135-4144
-
-
Nossa, C.W.1
Oberdorf, W.E.2
Yang, L.3
Aas, J.A.4
Paster, B.J.5
Desantis, T.Z.6
-
19
-
-
33747888910
-
Hoeflea alexandrii sp. nov., isolated from the toxic dinoflagellate Alexandrium minutum AL1V
-
Palacios L, Arahal D, Reguera B, Marin I. (2006). Hoeflea alexandrii sp. nov., isolated from the toxic dinoflagellate Alexandrium minutum AL1V. Int J Syst Evol Microbiol 56: 1991.
-
(2006)
Int J Syst Evol Microbiol
, vol.56
, pp. 1991
-
-
Palacios, L.1
Arahal, D.2
Reguera, B.3
Marin, I.4
-
20
-
-
79951813933
-
Vertical stratification of microbial communities in the Red Sea revealed by 16S rDNA pyrosequencing
-
Qian P, Wang Y, Lee O, Lau S, Yang J, Lafi F et al. (2010). Vertical stratification of microbial communities in the Red Sea revealed by 16S rDNA pyrosequencing. ISME J 5: 507-518.
-
(2010)
ISME J
, vol.5
, pp. 507-518
-
-
Qian, P.1
Wang, Y.2
Lee, O.3
Lau, S.4
Yang, J.5
Lafi, F.6
-
21
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
Qin J, Li R, Raes J, ArumugamM,BurgdorfKS, ManichanhC et al. (2010). A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464: 59-65.
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
Arumugam, M.4
Burgdorf, K.S.5
Manichanh, C.6
-
22
-
-
34547800097
-
Pyrosequencing enumerates and contrasts soil microbial diversity
-
Roesch L, Fulthorpe R, Riva A, Casella G, Hadwin A, Kent A et al. (2007). Pyrosequencing enumerates and contrasts soil microbial diversity. ISME J 1: 283-290.
-
(2007)
ISME J
, vol.1
, pp. 283-290
-
-
Roesch, L.1
Fulthorpe, R.2
Riva, A.3
Casella, G.4
Hadwin, A.5
Kent, A.6
-
23
-
-
80052970180
-
Evidence for a core gut microbiota in the zebrafish
-
Roeselers G, Mittge EK, Stephens WZ, Parichy DM, Cavanaugh CM, Guillemin K et al. (2011). Evidence for a core gut microbiota in the zebrafish. ISME J 5: 1595-1608.
-
(2011)
ISME J
, vol.5
, pp. 1595-1608
-
-
Roeselers, G.1
Mittge, E.K.2
Stephens, W.Z.3
Parichy, D.M.4
Cavanaugh, C.M.5
Guillemin, K.6
-
25
-
-
53649106195
-
Next-generation DNA sequencing
-
Shendure J, Ji H. (2008). Next-generation DNA sequencing. Nat Biotechnol 26: 1135-1145.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1135-1145
-
-
Shendure, J.1
Ji, H.2
-
26
-
-
0030741576
-
Phylogenetic analysis and in situ identification of bacteria in activated sludge
-
Snaidr J, Amann R, Huber I, Ludwig W, Schleifer KH. (1997). Phylogenetic analysis and in situ identification of bacteria in activated sludge. Appl Environ Microbiol 63: 2884-2896.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 2884-2896
-
-
Snaidr, J.1
Amann, R.2
Huber, I.3
Ludwig, W.4
Schleifer, K.H.5
-
27
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored 'rare biosphere
-
Sogin M, Morrison H, Huber J, Welch D, Huse S, Neal P et al. (2006). Microbial diversity in the deep sea and the underexplored 'rare biosphere'. Proc Nat Acad Sci 103: 12115.
-
(2006)
Proc Nat Acad Sci
, vol.103
, pp. 12115
-
-
Sogin, M.1
Morrison, H.2
Huber, J.3
Welch, D.4
Huse, S.5
Neal, P.6
-
28
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen JA et al. (2004). Environmental genome shotgun sequencing of the Sargasso Sea. Science 304: 66-74.
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
Remington, K.2
Heidelberg, J.F.3
Halpern, A.L.4
Rusch, D.5
Eisen, J.A.6
-
29
-
-
0036624935
-
Bacterial community composition and function in sewage treatment systems
-
Wagner M, Loy A. (2002). Bacterial community composition and function in sewage treatment systems. Curr Opin Biotechnol 13: 218-227.
-
(2002)
Curr Opin Biotechnol
, vol.13
, pp. 218-227
-
-
Wagner, M.1
Loy, A.2
-
30
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang Q, Garrity G, Tiedje J, Cole J. (2007). Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.2
Tiedje, J.3
Cole, J.4
-
31
-
-
70350527180
-
Conservative fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies
-
Wang Y, Qian P. (2009). Conservative fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies. PloS One 4: E7401.
-
(2009)
PloS One
, vol.4
-
-
Wang, Y.1
Qian, P.2
-
32
-
-
77957346491
-
Bacterial community structure in geographically distributed biological wastewater treatment reactors
-
Xia S, Duan L, Song Y, Li J, Piceno Y, Andersen G et al. (2010). Bacterial community structure in geographically distributed biological wastewater treatment reactors. Environ Sci Technol 44: 1043-1045.
-
(2010)
Environ Sci Technol
, vol.44
, pp. 1043-1045
-
-
Xia, S.1
Duan, L.2
Song, Y.3
Li, J.4
Piceno, Y.5
Andersen, G.6
-
33
-
-
77953990221
-
Isolation, characterization, and abundance of filamentous members of Caldilineae in activated sludge
-
Yoon DN, Park SJ, Kim SJ, Jeon CO, Chae JC, Rhee SK. (2010). Isolation, characterization, and abundance of filamentous members of Caldilineae in activated sludge. J Microbiol 48: 275-283.
-
(2010)
J Microbiol
, vol.48
, pp. 275-283
-
-
Yoon, D.N.1
Park, S.J.2
Kim, S.J.3
Jeon, C.O.4
Chae, J.C.5
Rhee, S.K.6
|