-
1
-
-
52449114817
-
Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities
-
Gilbert JA, Field D, Huang Y, Edwards R, Li W, et al. (2008) Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities. PLoS One 3: e3042.
-
(2008)
PLoS One
, vol.3
-
-
Gilbert, J.A.1
Field, D.2
Huang, Y.3
Edwards, R.4
Li, W.5
-
2
-
-
49649087440
-
Simultaneous Assessment of Soil Microbial Community Structure and Function through Analysis of the Meta-Transcriptome
-
Urich T, Lanzén A, Qi J, Huson DH, Schleper C, et al. (2008) Simultaneous Assessment of Soil Microbial Community Structure and Function through Analysis of the Meta-Transcriptome. PLoS ONE 3(6): e2527.
-
(2008)
PLoS ONE
, vol.3
, Issue.6
-
-
Urich, T.1
Lanzén, A.2
Qi, J.3
Huson, D.H.4
Schleper, C.5
-
3
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, et al. (2010) A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464: 59-65.
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
Arumugam, M.4
Burgdorf, K.S.5
-
4
-
-
70449530747
-
Metagenomic study of the oral microbiota by Illumina high-throughput sequencing
-
Lazarevic V, Whiteson K, Huse S, Hernandez D, Farinelli L, et al. (2009) Metagenomic study of the oral microbiota by Illumina high-throughput sequencing. J Microbiol Methods 79: 266-271.
-
(2009)
J Microbiol Methods
, vol.79
, pp. 266-271
-
-
Lazarevic, V.1
Whiteson, K.2
Huse, S.3
Hernandez, D.4
Farinelli, L.5
-
5
-
-
84861633828
-
Metagenomic and Metatranscriptomic Analysis of Microbial Community Structure and Gene Expression of Activated Sludge
-
Yu K, Zhang T, (2012) Metagenomic and Metatranscriptomic Analysis of Microbial Community Structure and Gene Expression of Activated Sludge. PLoS ONE 7(5): e38183.
-
(2012)
PLoS ONE
, vol.7
, Issue.5
-
-
Yu, K.1
Zhang, T.2
-
6
-
-
84861345451
-
454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants
-
Zhang T, Shao MF, Ye L, (2011) 454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants. Isme Journal. 6: 1137-1147.
-
(2011)
Isme Journal
, vol.6
, pp. 1137-1147
-
-
Zhang, T.1
Shao, M.F.2
Ye, L.3
-
7
-
-
84856496549
-
Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis
-
Scholz MB, Lo C-C, Chain PS, (2011) Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis. Curr Opin Biotechnol 23: 9-15.
-
(2011)
Curr Opin Biotechnol
, vol.23
, pp. 9-15
-
-
Scholz, M.B.1
Lo, C.-C.2
Chain, P.S.3
-
8
-
-
79955877212
-
RAPSearch: a fast protein similarity search tool for short reads
-
Ye Y, Choi JH, Tang H, (2011) RAPSearch: a fast protein similarity search tool for short reads. BMC Bioinformatics 12: 159.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 159
-
-
Ye, Y.1
Choi, J.H.2
Tang, H.3
-
9
-
-
4544349273
-
Patternhunter II: highly sensitive and fast homology search
-
Li M, Ma B, Kisman D, Tromp J, (2004) Patternhunter II: highly sensitive and fast homology search. J Bioinform Comput Biol 2(3): 417-439.
-
(2004)
J Bioinform Comput Biol
, vol.2
, Issue.3
, pp. 417-439
-
-
Li, M.1
Ma, B.2
Kisman, D.3
Tromp, J.4
-
10
-
-
0036202921
-
PatternHunter: faster and more sensitive homology search
-
Ma B, Tromp J, Li M, (2002) PatternHunter: faster and more sensitive homology search. Bioinformatics 18(3): 440-445.
-
(2002)
Bioinformatics
, vol.18
, Issue.3
, pp. 440-445
-
-
Ma, B.1
Tromp, J.2
Li, M.3
-
11
-
-
0036226603
-
BLAT-The BLAST-Like Alignment Tool
-
Kent WJ, (2002) BLAT-The BLAST-Like Alignment Tool. Genome Res 12: 656-664.
-
(2002)
Genome Res
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
12
-
-
0037267806
-
Human-Mouse Alignments with BLASTZ
-
Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, et al. (2003) Human-Mouse Alignments with BLASTZ. Genome Res 13: 103-107.
-
(2003)
Genome Res
, vol.13
, pp. 103-107
-
-
Schwartz, S.1
Kent, W.J.2
Smit, A.3
Zhang, Z.4
Baertsch, R.5
-
13
-
-
38549139537
-
IMG/M: a data management and analysis system for metagenomes
-
Markowitz VM, Ivanova NN, Szeto E, Palaniappan K, Chu K, et al. (2008) IMG/M: a data management and analysis system for metagenomes. Nucleic Acids Res 36: D534-538.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Markowitz, V.M.1
Ivanova, N.N.2
Szeto, E.3
Palaniappan, K.4
Chu, K.5
-
14
-
-
33947215475
-
CAMERA: A Community Resource for Metagenomics
-
Seshadri R, Kravitz SA, Smarr L, Gilna P, Frazier M, (2007) CAMERA: A Community Resource for Metagenomics. PLoS Biol 5: e75.
-
(2007)
PLoS Biol
, vol.5
-
-
Seshadri, R.1
Kravitz, S.A.2
Smarr, L.3
Gilna, P.4
Frazier, M.5
-
15
-
-
53549118607
-
The metagenomics RAST server-a public resource for the automatic phylogenetic and functional analysis of metagenomes
-
Meyer F, Paarman D, D'Souza M, Olson R, Glass EM, et al. (2008) The metagenomics RAST server-a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 9: 386.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 386
-
-
Meyer, F.1
Paarman, D.2
D'Souza, M.3
Olson, R.4
Glass, E.M.5
-
16
-
-
80052549504
-
Integrative analysis of environmental sequences using MEGAN4
-
Huson DH, Mitra S, Ruscheweyh HJ, Weber N, Schuster SC, (2011) Integrative analysis of environmental sequences using MEGAN4. Genome Res 21: 1552-1560.
-
(2011)
Genome Res
, vol.21
, pp. 1552-1560
-
-
Huson, D.H.1
Mitra, S.2
Ruscheweyh, H.J.3
Weber, N.4
Schuster, S.C.5
-
17
-
-
77957927457
-
Gut Microbial Gene Expression in Mother-Fed and Formula-Fed Piglets
-
Poroyko V, White JR, Wang M, Donovan S, Alverdy J, et al. (2010) Gut Microbial Gene Expression in Mother-Fed and Formula-Fed Piglets. PLoS ONE 5(8): e12459.
-
(2010)
PLoS ONE
, vol.5
, Issue.8
-
-
Poroyko, V.1
White, J.R.2
Wang, M.3
Donovan, S.4
Alverdy, J.5
-
18
-
-
84856567743
-
Metagenomic analysis of DNA viruses in a wastewater treatment plant in tropical climate
-
Tamaki H, Zhang R, Angly FE, Nakamura S, Hong P-Y, et al. (2012) Metagenomic analysis of DNA viruses in a wastewater treatment plant in tropical climate. Environ Microbiol 14(2): 441-452.
-
(2012)
Environ Microbiol
, vol.14
, Issue.2
, pp. 441-452
-
-
Tamaki, H.1
Zhang, R.2
Angly, F.E.3
Nakamura, S.4
Hong, P.-Y.5
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