Correction: Solid-to-fluid - Like DNA transition in viruses facilitates infection (Proc Natl Acad Sci USA (2014) 111, 41, (14675-14680) DOI: 10.1073/pnas.1321637111);Solid-to-fluid-like DNA transition in viruses facilitates infection

Proceedings of the National Academy of Sciences of the United States of America

Volumn 111, Issue 41, 2014, Pages 14675-14680

  Liu, Ting ^a   Sae Ueng, Udom ^a   Li, Dong ^a   Lander, Gabriel C ^b   Zuo, Xiaobing ^c   Jönsson, Bengt ^d   Rau, Donald ^e   Shefer, Ivetta ^a   Evilevitch, Alex ^a,d   Reiss, Howard ^f  

^a CARNEGIE MELLON UNIVERSITY   (United States)

^b SCRIPPS RESEARCH INSTITUTE   (United States)

^c ARGONNE NATIONAL LABORATORY   (United States)

^d LUND UNIVERSITY   (Sweden)

^e NATIONAL INSTITUTES OF HEALTH   (United States)

^f UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

AFM; DNA ejection; DNA fluidity; Intracapsid DNA transition; Isothermal titration calorimetry

Indexed keywords

VIRUS DNA;

ATOMIC FORCE MICROSCOPY; CHEMISTRY; CRYOELECTRON MICROSCOPY; ENTEROBACTERIA PHAGE LAMBDA; ESCHERICHIA COLI; FLUORESCENCE; HUMAN; KINETICS; PHASE TRANSITION; THERMODYNAMICS; ULTRASTRUCTURE; VIROLOGY; VIRUS CAPSID; VIRUS INFECTION;

BACTERIOPHAGE LAMBDA; CAPSID; CRYOELECTRON MICROSCOPY; DNA, VIRAL; ESCHERICHIA COLI; FLUORESCENCE; HUMANS; KINETICS; MICROSCOPY, ATOMIC FORCE; PHASE TRANSITION; THERMODYNAMICS; VIRUS DISEASES;

EID: 84907942361     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1506556112     Document Type: Erratum

References (44)

1. Evilevitch A, Lavelle L, Knobler CM, Raspaud E, Gelbart WM (2003) Osmotic pressure inhibition of DNA ejection from phage. Proc Natl Acad Sci USA 100(16):9292-9295.
2. Cerritelli ME, et al. (1997) Encapsidated conformation of bacteriophage T7 DNA. Cell 91(2):271-280.
3. Earnshaw WC, Harrison SC (1977) DNA arrangement in isometric phage heads. Nature 268(5621):598-602.
4. Earnshaw WC, Casjens SR (1980) DNA packaging by the double-stranded DNA bacteriophages. Cell 21(2):319-331.
5. Lander GC, et al. (2006) The structure of an infectious P22 virion shows the signal for headful DNA packaging. Science 312(5781):1791-1795.
6. Bauer DW, Huffman JB, Homa FL, Evilevitch A (2013) Herpes virus genome, the pressure is on. J Am Chem Soc 135(30):11216-11221.
7. Prasad BV, et al. (1996) Visualization of ordered genomic RNA and localization of transcriptional complexes in rotavirus. Nature 382(6590):471-473.
8. Bazinet C, King J (1985) The DNA translocating vertex of dsDNA bacteriophage. Annu Rev Microbiol 39:109-129.
9. Grayson P, Han L, Winther T, Phillips R (2007) Real-time observations of single bacteriophage lambda DNA ejections in vitro. Proc Natl Acad Sci USA 104(37):14652-14657.
10. Lander GC, et al. (2013) DNA bending-induced phase transition of encapsidated genome in phage λ. Nucleic Acids Res 41(8):4518-4524.
11. Köster S, Evilevitch A, Jeembaeva M, Weitz DA (2009) Influence of internal capsid pressure on viral infection by phage lambda. Biophys J 97(6):1525-1529.
12. Tzlil S, Kindt JT, Gelbart WM, Ben-Shaul A (2003) Forces and pressures in DNA packaging and release from viral capsids. Biophys J 84(3):1616-1627.
13. Smith DE, et al. (2001) The bacteriophage straight phi29 portal motor can package DNA against a large internal force. Nature 413(6857):748-752.
14. Nurmemmedov E, Castelnovo M, Medina E, Catalano CE, Evilevitch A (2012) Challenging packaging limits and infectivity of phage λ. J Mol Biol 415(2):263-273.
15. Zimmerman SB, Murphy LD (1996) Macromolecular crowding and the mandatory condensation of DNA in bacteria. FEBS Lett 390(3):245-248.
16. Livolant F, Leforestier A (1996) Condensed phases of DNA: Structures and phase transitions. Prog Polym Sci 21(6):1115-1164.
17. Strzelecka TE, Rill RL (1991) Phase transitions in concentrated DNA solutions: Ionic strength dependence. Macromolecules 24(18):5124-5133.
18. Leforestier A, Livolant F (2010) The bacteriophage genome undergoes a succession of intracapsid phase transitions upon DNA ejection. J Mol Biol 396(2):384-395.
19. Odijk T (2004) Statics and dynamics of condensed DNA within phages and globules. Philos Trans A Math Phys Eng Sci 362(1820):1497-1517.
20. Gabashvili IS, Grosberg A Y (1992) Dynamics of double stranded DNA reptation from bacteriophage. J Biomol Struct Dyn 9(5):911-920.
21. Berndsen ZT, Keller N, Grimes S, Jardine PJ, Smith DE (2014) Nonequilibrium dynamics and ultraslow relaxation of confined DNA during viral packaging. Proc Natl Acad Sci USA 111(23):8345-8350.
22. Riemer SC, Bloomfield VA (1978) Packaging of DNA in bacteriophage heads: Some considerations on energetics. Biopolymers 17(3):785-794.
23. Flint SJ, Enquist LW, Krug RM, Skalka AM, Racaniello VR (2000) Principles of Virology: Molecular Biology, Pathogenesis and Control (American Society for Microbiology, Washington, DC).
24. Purohit PK, Kondev J, Phillips R (2003) Mechanics of DNA packaging in viruses. Proc Natl Acad Sci USA 100(6):3173-3178.
25. Jeembaeva M, Jönsson B, Castelnovo M, Evilevitch A (2010) DNA heats up: Energetics of genome ejection from phage revealed by isothermal titration calorimetry. J Mol Biol 395(5):1079-1087.
26. Löf D, Schillén K, Jönsson B, Evilevitch A (2007) Forces controlling the rate of DNA ejection from phage lambda. J Mol Biol 368(1):55-65.
27. Chakraborty S, et al. (2012) Mechanistic insight into the structure and dynamics of entangled and hydrated λ-phage DNA. J Phys Chem A 116(17):4274-4284.
28. Evilevitch A, et al. (2008) Effects of salt concentrations and bending energy on the extent of ejection of phage genomes. Biophys J 94(3):1110-1120.
29. Qiu X, et al. (2011) Salt-dependent DNA-DNA spacings in intact bacteriophage λ reflect relative importance of DNA self-repulsion and bending energies. Phys Rev Lett 106(2):028102.
30. Ivanovska I, Wuite G, Jönsson B, Evilevitch A (2007) Internal DNA pressure modifies stability of WT phage. Proc Natl Acad Sci USA 104(23):9603-9608.
31. Evilevitch A, et al. (2011) Effects of salts on internal DNA pressure and mechanical properties of phage capsids. J Mol Biol 405(1):18-23.
32. de Frutos M, Letellier L, Raspaud E (2005) DNA ejection from bacteriophage T5: Analysis of the kinetics and energetics. Biophys J 88(2):1364-1370.
33. Booy FP, et al. (1991) Liquid-crystalline, phage-like packing of encapsidated DNA in herpes simplex virus. Cell 64(5):1007-1015.
34. Jiang W, et al. (2006) Structure of epsilon15 bacteriophage reveals genome organization and DNA packaging/injection apparatus. Nature 439(7076):612-616.
35. Huet A, Conway JF, Letellier L, Boulanger P (2010) In vitro assembly of the T=13 procapsid of bacteriophage T5 with its scaffolding domain. J Virol 84(18):9350-9358.
36. Comolli LR, et al. (2008) Three-dimensional architecture of the bacteriophage phi29 packaged genome and elucidation of its packaging process. Virology 371(2):267-277.
37. Parsegian VA, Rand RP, Fuller NL, Rau DC (1986) Osmotic stress for the direct measurement of intermolecular forces. Methods Enzymol 127:400-416.
38. Lander GC, et al. (2008) Bacteriophage lambda stabilization by auxiliary protein gpD: Timing, location, and mechanism of attachment determined by cryo-EM. Structure 16(9):1399-1406.
39. Park SY, Harries D, Gelbart WM (1998) Topological defects and the optimum size of DNA condensates. Biophys J 75(2):714-720.
40. Kornyshev AA, Lee DJ, Leikin S, Wynveen A (2007) Structure and interactions of biological helices. Rev Mod Phys 79:943-996.
41. Geggier S, Kotlyar A, Vologodskii A (2011) Temperature dependence of DNA persistence length. Nucleic Acids Res 39(4):1419-1426.
42. Rau DC, Parsegian VA (1992) Direct measurement of temperature-dependent solvation forces between DNA double helices. Biophys J 61(1):260-271.
43. Chiaruttini N, et al. (2010) Is the in vitro ejection of bacteriophage DNA quasistatic? A bulk to single virus study. Biophys J 99(2):447-455.
44. Doceul V, Hollinshead M, van der Linden L, Smith GL (2010) Repulsion of superinfecting virions: A mechanism for rapid virus spread. Science 327(5967):873-876.