Encapsidated conformation of bacteriophage T7 DNA

Cell

Volumn 91, Issue 2, 1997, Pages 271-280

  Cerritelli, Mario E ^a   Cheng, Naiqian ^a   Rosenberg, Alan H ^b   McPherson, Catherine E ^a   Booy, Frank P ^a   Steven, Alasdair C ^a,b  

^a NATIONAL INSTITUTE OF ARTHRITIS AND MUSCULOSKELETAL AND SKIN DISEASES   (United States)

^b BROOKHAVEN NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIOPHAGE DNA;

ARTICLE; BACTERIOPHAGE T7; CRYOELECTRON MICROSCOPY; DNA CONFORMATION; DNA DETERMINATION; IMAGE PROCESSING; NONHUMAN; PRIORITY JOURNAL; STRUCTURE ANALYSIS; THREE DIMENSIONAL IMAGING;

MIRIDAE;

EID: 0030669286     PISSN: 00928674     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0092-8674(00)80409-2     Document Type: Article

References (49)

1. Adrian, M., Dubochet, J., Lepault, J., and McDowall, A.W. (1984). Cryo-electron microscopy of viruses. Nature 308, 32-36.
2. Aubrey, K.L., Casjens, S.R., and Thomas, G.J., Jr. (1992). Secondary structure and interactions of the packaged dsDNA genome of bacteriophage P22 investigated by Raman difference spectroscopy. Biochemistry 31, 11835-11842.
3. Baker, T.S., Drak, J., and Bina, M. (1988). Reconstruction of the three-dimensional structure of simian virus 40 and visualization of the chromatin core. Proc. Natl. Acad. Sci. USA 85, 422-426.
4. Baker, T.S., Drak, J., and Bina, M. (1989). The capsid of small papova viruses contains 72 pentameric capsomeres: direct evidence from cryo-electron-microscopy of simian virus 40. Biophys. J. 55, 243-253.
5. Black, L.W. (1989). DNA packaging in dsDNA bacteriophages. Annu. Rev. Microbiol. 43, 267-292.
6. Black, L.W., Newcomb, W.W., Boring, J.W., and Brown, J.C. (1985). Ion etching bacteriophage T4: support for a spiral-fold model of packaged DNA. Proc. Natl. Acad. Sci. USA 82, 7960-7964.
7. Booy, F.P. (1992). Cryo-electron microscopy. In Membrane Fusion. J. Benz, ed. (Boca Raton: CRC Press), pp. 21-54.
8. Booy, F.P., Ruigrok, R.W., and van Bruggen, E.F. (1985). Electron microscopy of influenza virus. A comparison of negatively stained and ice-embedded particles. J. Mol. Biol. 184, 667-676.
9. Booy, F.P., Newcomb, W.W., Trus, B.L., Brown, J.C., Baker, T.S., and Steven, A.C. (1991). Liquid-crystalline, phage-like, packing of encapsidated DNA in herpes simplex virus. Cell 64, 1007-1015.
10. Booy, F.P., Trus, B.L., Newcomb, W.W., Brown, J.C., Serwer, P., and Steven, A.C. (1992). Organization of dsDNA in icosahedral virus capsids. Proc. 50th Annu. Mtg. EMSA 1, 452-453.
11. Casjens, S., and Hendrix, R. (1988). Control mechanisms in dsDNA bacteriophage assembly. In The Bacteriophages, R. Calendar, ed. (New York: Plenum Publishing Corp.), pp. 15-91.
12. Cerritelli, M.E., and Studier, F.W. (1996a). Assembly of T7 capsids from independently expressed and purified head protein and scaf-folding protein. J. Mol. Biol. 258, 286-298.
13. Cerritelli, M.E., and Studier, F.W. (1996b). Purification and characterization of T7 head-tail connectors expressed from the cloned gene. J. Mol. Biol. 258, 299-307.
14. Cerritelli, M.E., Wall, J.S., Simon, M.N., Conway, J.F., and Steven, A.C. (1996). Stoichiometry and domainal organization of the long tail-fiber of bacteriophage T4: a hinged viral adhesin. J. Mol. Biol. 260, 767-780.
15. Chung, Y.B., Nardone, C., and Hinkle, D.C. (1990). Bacteriophage T7 DNA packaging. III. A "hairpin" end formed on T7 concatemers may bean intermediate in the processing reaction. J. Mol. Biol. 216, 939-948.
16. Conway, J.F., Trus, B.L., Booy, F.P., Newcomb, W.W., Brown, J.C., and Steven, A.C. (1993). The effects of radiation damage on the structure of frozen hydrated HSV-1 capsids. J. Struct. Biol. 111, 222-233.
17. Crowther, R.A. (1971). Procedures for three-dimensional reconstruction of spherical viruses by Fourier synthesis from electron micrographs. Philos. Trans. R. Soc. London, Ser. B 261, 221-230.
18. Dierksen, K., Typke, D., Hegerl, R., Walz, J., Sackmann, E., and Baumeister, W. (1995). Three-dimensional structure of lipid vesicles embedded in vitreous ice and investigated by automated electron tomography. Biophys. J. 68, 1416-1422.
19. Donate, L.E., Murialdo, H., and Carrascosa, J.L. (1990). Production of lambda-phi 29 phage chimeras. Virology 179, 936-940.
20. Earnshaw, W.C., and Harrison, S.C. (1977). DNA arrangement in isometric phage heads. Nature 268, 598-602.
21. Earnshaw, W., Casjens, S., and Harrison, S.C. (1976). Assembly of the head of bacteriophage P22: X-ray diffraction from heads, proheads and related structures. J. Mol. Biol. 104, 387-410
22. Earnshaw, W.C., King, J., Harrison, S.C., and Eiserling, F.A. (1978). The structural organization of DNA packaged within the heads of T4 wild-type, isometric and giant bacteriophages. Cell 14, 559-568.
23. Earnshaw, W.C., Hendrix, R.W., and King, J. (1979). Structural studies of bacteriophage lambda heads and proheads by small angle X-ray diffraction. J. Mol. Biol. 134, 575-594.
24. Fuller, S.D. (1987). The T=4 envelope of Sindbis virus is organized by interactions with a complementary T=3 capsid. Cell 48, 923-934.
25. Garcia, L.R., and Molineux, I.J. (1996). Transcription-independent DNA translocation of bacteriophage T7 DNA into Escherichia coli. J. Bacteriol. 178, 6921-6929.
26. Gellert, M., and Davies, D.R. (1964). Organization of DNA in bacteriophage T4. J. Mol. Biol. 8, 341-347.
27. Harrison, S.C. (1983). Packaging of DNA into bacteriophage heads: a model. J. Mol. Biol. 171, 577-580.
28. Hud, N.V. (1995). Double-stranded DNA organization in bacteriophage heads: an alternative toroid-based model. Biophys. J. 69, 1355-1362.
29. Kocsis, E., Cerritelli, M.E., Trus, B.L., Cheng, N., and Steven, A.C. (1995). Improved methods for determination of rotational symmetries in macromolecules. Ultramicroscopy 60, 219-228.
30. Kosturko, L.D., Hogan, M., and Dattagupta, N. (1979). Structure of DNA within three isometric bacteriophages. Cell 16, 515-522.
31. Lepault, J., Dubochet, J., Baschong, W., and Kellenberger, E. (1987). Organization of double-stranded DNA in bacteriophages: a study by cryo-electron microscopy of vitrified samples. EMBO J. 6, 1507-1512.
32. Lepault, J., and Leonard, K. (1985). Three-dimensional structure of unstained, frozen-hydrated extended tails of bacteriophage T4. J. Mol. Biol. 182, 431-441.
33. Livolant, F., and Leforestier, A. (1996). Condensed phases of DNA: structure and phase transitions. Prog. Polym. Sci. 21, 1115-1164.
34. Moffatt, B.A., and Studier, F.W. (1988). Entry of bacteriophage T7 DNA into the cell and escape from host restriction. J. Bacteriol. 170, 2095-2105.
35. Morita, M., Tasaka, M., and Fujisawa, H. (1993). DNA packaging ATPase of bacteriophage T3. Virology 193, 748-752.
36. North, A.C.T., and Rich, A. (1961). X-ray diffraction studies of bacterial viruses. Nature 191, 1242-1245.
37. Richards, K.E., Williams, R.C., and Calendar, R. (1973). Mode of DNA packing within bacteriophage heads. J. Mol. Biol. 78, 255-259.
38. Roeder, G.S., and Sadowski, P.D. (1977). Bacteriophage T7 morphogenesis: phage-related particles in cells infected with wild-type and mutant T7 phage. Virology 76, 263-285.
39. Serwer, P. (1976). Internal proteins of bacteriophage T7. J. Mol. Biol. 107, 271-291.
40. Serwer, P. (1986). Arrangement of double-stranded DNA packaged in bacteriophage capsids. An alternative model. J. Mol. Biol. 190, 509-512.
41. Serwer, P., Hayes, S.J., and Watson, R.H. (1992). Conformation of DNA packaged in bacteriophage T7 analysis by use of ultraviolet light-induced DNA-capsid cross-linking. J. Mol. Biol. 223, 999-1011.
42. Serwer, P., Khan, S.A., Hayes, S.J., Watson, R.H., and Griess, G.A. (1997). The conformation of packaged bacteriophage T7 DNA: informative images of negatively stained T7. J. Struct. Biol. 120, 32-43.
43. Shibata, H., Fujisawa, H., and Minagawa, T. (1987). Characterization of the bacteriophage T3 DNA packaging reaction in vitro in a defined system. J. Mol. Biol. 196, 845-851.
44. Steven, A.C., and Trus, B.L. (1986). The structure of bacteriophage T7. In Electron Microscopy of Proteins, Viral Structure (London: Academic Press Inc.), pp. 1-35.
45. Steven, A.C., Trus, B.L., Booy, F.P., Cheng, N., Zlotnick, A., Caston, J.R., and Conway, J.F. (1997). The making and breaking of symmetry in virus capsid assembly: glimpses of capsid biology from cryoelectron microscopy. FASEB J. 11, 733-742.
46. Thomas, G.J., Jr., and Serwer, P. (1990). Secondary structure of the double-stranded DNA genome of bacteriophage T7 in packaged, underpackaged and unpackaged states. J. Raman Spectrosc. 21, 569-575.
47. Trus, B.L., Kocsis, E., Conway, J.F., and Steven, A.C. (1996). Digital image processing of electron micrographs: the PIC system-III. J. Struct. Biol. 116, 61-67.
48. Trus, B.L., Newcomb, W.W., Booy, F.P., Brown, J.C., and Steven, A.C. (1992). Distinct monoclonal antibodies separately label the hexons or the pentons of herpes simplex virus capsid. Proc. Natl. Acad. Sci. USA 89, 11508-11512.
49. Widom, J., and Baldwin, R.L. (1983). Tests of spool models for DNA packaging in phage lambda. J. Mol. Biol. 171, 419-437.