메뉴 건너뛰기




Volumn 99, Issue 2, 2010, Pages 447-455

Is the in vitro ejection of bacteriophage DNA quasistatic? A bulk to single virus study

Author keywords

[No Author keywords available]

Indexed keywords

ESCHERICHIA COLI PROTEIN; FHUA PROTEIN, E COLI; OUTER MEMBRANE PROTEIN; PROTEIN BINDING; VIRUS DNA;

EID: 77955190740     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2010.04.048     Document Type: Article
Times cited : (35)

References (40)
  • 1
    • 0035043999 scopus 로고    scopus 로고
    • No syringes please, ejection of phage T7 DNA from the virion is enzyme driven
    • Molineux, I. J. 2001. No syringes please, ejection of phage T7 DNA from the virion is enzyme driven. Mol. Microbiol. 40: 1-8.
    • (2001) Mol. Microbiol. , vol.40 , pp. 1-8
    • Molineux, I.J.1
  • 3
    • 0017803051 scopus 로고
    • Packaging of DNA in bacteriophage heads: Some considerations on energetics
    • Riemer, S. C., and V. A. Bloomfield. 1978. Packaging of DNA in bacteriophage heads: some considerations on energetics. Biopolymers. 17: 785-794.
    • (1978) Biopolymers , vol.17 , pp. 785-794
    • Riemer, S.C.1    Bloomfield, V.A.2
  • 4
    • 0035909370 scopus 로고    scopus 로고
    • The bacteriophage straight φ p29 portal motor can package DNA against a large internal force
    • Smith, D. E., S. J. Tans, ..., C. Bustamante. 2001, The bacteriophage straight φ p29 portal motor can package DNA against a large internal force. Nature, 413: 748-752.
    • (2001) Nature , vol.413 , pp. 748-752
    • Smith, D.E.1    Tans, S.J.2    Bustamante, C.3
  • 5
    • 0010287406 scopus 로고    scopus 로고
    • Purification and structural and functional characterization of FhuA, a transporter of the Escherichia coli outer membrane
    • DOI 10.1021/bi9608673
    • Boulanger, P., M. le Maire, ..., L. Letellier. 1996. Purification and structural and functional characterization of FhuA, a transporter of the Escherichia coli outer membrane. Biochemistry. 35: 14216-14224. (Pubitemid 26384416)
    • (1996) Biochemistry , vol.35 , Issue.45 , pp. 14216-14224
    • Boulanger, P.1    Maire, M.L.2    Bonhivers, M.3    Dubois, S.4    Desmadril, M.5    Letellier, L.6
  • 6
    • 0029133708 scopus 로고
    • Overproduced and purified receptor binding protein pb5 of bacteriophage T5 binds to the T5 receptor protein FhuA
    • Mondigler, M., R. T. Vögele, and K. J. Heller. 1995. Overproduced and purified receptor binding protein pb5 of bacteriophage T5 binds to the T5 receptor protein FhuA. FEMS Microbiol. Lett. 130: 293-300.
    • (1995) FEMS Microbiol. Lett. , vol.130 , pp. 293-300
    • Mondigler, M.1    Vögele, R.T.2    Heller, K.J.3
  • 7
    • 33947325925 scopus 로고    scopus 로고
    • Forces controlling the rate of DNA ejection from phage A
    • DOI 10.1016/j.jmb.2007.01.076, PII S0022283607001349
    • Löf, D., K. Schulén, ..., A. Evilevitch. 2007. Forces controlling the rate of DNA ejection from phage A. J. Mol. Biol. 368: 55-65. (Pubitemid 46441215)
    • (2007) Journal of Molecular Biology , vol.368 , Issue.1 , pp. 55-65
    • Lof, D.1    Schillen, K.2    Jonsson, B.3    Evilevitch, A.4
  • 8
    • 36849062085 scopus 로고    scopus 로고
    • A kinetic analysis of DNA ejection from tailed phages revealing the prerequisite activation energy
    • DOI 10.1529/biophysj.107.111435
    • Raspaud, E., T. Forth, ..., M. de Frutos. 2007. A kinetic analysis of DNA ejection from tailed phages revealing the prerequisite activation energy. Biophys. J. 93: 3999-4005. (Pubitemid 350223815)
    • (2007) Biophysical Journal , vol.93 , Issue.11 , pp. 3999-4005
    • Raspaud, E.1    Forth, T.2    Sao-Jose, C.3    Tavares, P.4    De, F.M.5
  • 9
    • 14744274379 scopus 로고    scopus 로고
    • DNA ejection from bacteriophage T5: Analysis of the kinetics and energetics
    • de Frutos, M., L. Letellier, and E. Raspaud. 2005. DNA ejection from bacteriophage T5: analysis of the kinetics and energetics. Biophys. J. 88: 1364-1370.
    • (2005) Biophys. J. , vol.88 , pp. 1364-1370
    • De Frutos, M.1    Letellier, L.2    Raspaud, E.3
  • 11
    • 38149099289 scopus 로고    scopus 로고
    • DNA ejection from bacteriophage: Towards a general behavior for osmotic-suppression experiments
    • Castelnovo, M., and A. Evilevitch. 2007. DNA ejection from bacteriophage: towards a general behavior for osmotic-suppression experiments. Eur Phys J E Soft Matter. 24: 9-18.
    • (2007) Eur Phys J e Soft Matter , vol.24 , pp. 9-18
    • Castelnovo, M.1    Evilevitch, A.2
  • 12
    • 84954358715 scopus 로고    scopus 로고
    • Bacteriophage T5 DNA ejection under pressure
    • Leforestier, A., S. Brasilés, ..., F. Livolant. 2008. Bacteriophage T5 DNA ejection under pressure. J. Mol. Biol. 384: 730-739.
    • (2008) J. Mol. Biol. , vol.384 , pp. 730-739
    • Leforestier, A.1    Brasilés, S.2    Livolant, F.3
  • 13
    • 35548967585 scopus 로고    scopus 로고
    • Pressure built by DNA packing inside virions: Enough to drive DNA ejection in vitro, largely insufficient for delivery into the bacterial cytoplasm
    • DOI 10.1016/j.jmb.2007.09.045, PII S0022283607012338
    • Sao-José, C., M. de Frutos, ..., P. Tavares. 2007. Pressure built by DNA packing inside virions: enough to drive DNA ejection, in vitro, largely insufficient for delivery into the bacterial cytoplasm. J. Mol. Biol. 374: 346-355. (Pubitemid 350007657)
    • (2007) Journal of molecular biology , vol.374 , Issue.2 , pp. 346-355
    • Sao-Jose, C.1    De, F.M.2    Raspaud, E.3    Santos, M.A.4    Tavares, P.5
  • 14
    • 44849102419 scopus 로고    scopus 로고
    • Ejection, dynamics of polymeric chains from viral capsids: Effect of solvent quality
    • Ali, I., D. Marenduzzo, and J. M. Yeomans. 2008. Ejection, dynamics of polymeric chains from viral capsids: effect of solvent quality. Biophys. J. 94: 4159-4164.
    • (2008) Biophys. J. , vol.94 , pp. 4159-4164
    • Ali, I.1    Marenduzzo, D.2    Yeomans, J.M.3
  • 15
    • 48549100410 scopus 로고    scopus 로고
    • DNA knotting in spooling like conformations in bacteriophages
    • Arsuaga, J., and Y. Diao. 2008. DNA knotting in spooling like conformations in bacteriophages. Comput. Math. Meth. Med. 9: 303-316.
    • (2008) Comput. Math. Meth. Med. , vol.9 , pp. 303-316
    • Arsuaga, J.1    Diao, Y.2
  • 18
    • 33745714419 scopus 로고    scopus 로고
    • Dynamics of DNA ejection from bacteriophage
    • Inamdar, M. M., W. M. Gelbart, and R. Phillips. 2006. Dynamics of DNA ejection from bacteriophage. Biophys. J. 91: 411-420.
    • (2006) Biophys. J. , vol.91 , pp. 411-420
    • Inamdar, M.M.1    Gelbart, W.M.2    Phillips, R.3
  • 19
    • 61449215083 scopus 로고    scopus 로고
    • Knot-controlled ejection of a polymer from, a virus capsid
    • Matthews, R., A. A. Louis, and J. M. Yeomans. 2009. Knot-controlled ejection of a polymer from, a virus capsid. Phys. Rev. Lett. 102: 088101-088104.
    • (2009) Phys. Rev. Lett. , vol.102 , pp. 88101-88104
    • Matthews, R.1    Louis, A.A.2    Yeomans, J.M.3
  • 20
    • 21244473581 scopus 로고    scopus 로고
    • Forces during bacteriophage DNA packaging and ejection
    • Purohit, P. K., M. M. Inamdar, ..., R, Phillips. 2005. Forces during bacteriophage DNA packaging and ejection. Biophys. J. 88: 851-866.
    • (2005) Biophys. J. , vol.88 , pp. 851-866
    • Purohit, P.K.1    Inamdar, M.M.2    Phillips, R.3
  • 21
    • 14744279786 scopus 로고    scopus 로고
    • Real-time imaging of DNA ejection from single phage particles
    • DOI 10.1016/j.cub.2004.12.080
    • Mangenot, S., M. Hochrein, ..., L. Letellier. 2005. Real-time imaging of DNA ejection from single phage particles. Curr. Biol. 15: 430-435. (Pubitemid 40323528)
    • (2005) Current Biology , vol.15 , Issue.5 , pp. 430-435
    • Mangenot, S.1    Hochrein, M.2    Radler, J.3    Letellier, L.4
  • 22
    • 77449116980 scopus 로고    scopus 로고
    • The bacteriophage genome undergoes a succession of intracapsid phase transitions upon DNA ejection
    • Leforestier, A., and F. Livolant. 2010. The bacteriophage genome undergoes a succession of intracapsid phase transitions upon DNA ejection. J. Mol. Biol. 396: 384-395.
    • (2010) J. Mol. Biol. , vol.396 , pp. 384-395
    • Leforestier, A.1    Livolant, F.2
  • 23
    • 10544220547 scopus 로고
    • Invasion by bacteriophage T5. II. Dissociation of calcium-independent and calcium-dependent processes
    • Lanni, Y. T. 1960. Invasion by bacteriophage T5. II. Dissociation of calcium-independent and calcium-dependent processes. Virology. 10: 514-529.
    • (1960) Virology , vol.10 , pp. 514-529
    • Lanni, Y.T.1
  • 24
    • 0014333701 scopus 로고
    • First-step-transfer deoxyribonucleic acid of bacteriophage T5
    • Lanni, Y. T. 1968. First-step-transfer deoxyribonucleic acid of bacteriophage T5. Bacterial. Rev. 32: 227-242.
    • (1968) Bacterial. Rev. , vol.32 , pp. 227-242
    • Lanni, Y.T.1
  • 25
    • 77955179633 scopus 로고
    • Molecular aspects of DNA transfer from phage T5 to host cells. 2. Origin of firststep-transfer DNA fragments
    • Lanni, Y. T., D. J. McCorquodale, and C. M. Wilson. 1964. Molecular aspects of DNA transfer from phage T5 to host cells. 2. Origin of firststep-transfer DNA fragments. J. Mol. Biol. 10: 19-27.
    • (1964) J. Mol. Biol. , vol.10 , pp. 19-27
    • Lanni, Y.T.1    McCorquodale, D.J.2    Wilson, C.M.3
  • 26
    • 0000022469 scopus 로고
    • Bacteriophage T5 and related phages
    • R. Calendar, editor. Plenum Press, New York
    • McCorquodale, J. D., and H. R. Warner. 1988. Bacteriophage T5 and related phages. In The Viruses. R. Calendar, editor. Plenum Press, New York.
    • (1988) The Viruses
    • McCorquodale, J.D.1    Warner, H.R.2
  • 27
    • 0018375165 scopus 로고
    • Interruption-deficient mutants of bacteriophage T5. I. Isolation and general properties
    • Rogers, S. G., E. A. Godwin, ..., M. Rhoades. 1979. Interruption- deficient mutants of bacteriophage T5. I. Isolation and general, properties. J. Virol. 29: 716-725. (Pubitemid 9098440)
    • (1979) Journal of Virology , vol.29 , Issue.2 , pp. 716-725
    • Rogers, S.G.1    Godwin, E.A.2    Shinosky, E.S.3    Rhoades, M.4
  • 28
    • 62449097312 scopus 로고    scopus 로고
    • Purification of bacteriophages and SDS-PAGE analysis of phage structural proteins from ghost particles
    • Boulanger, P. 2009. Purification of bacteriophages and SDS-PAGE analysis of phage structural proteins from ghost particles. Methods Mol. Biol. 502: 227-238.
    • (2009) Methods Mol. Biol. , vol.502 , pp. 227-238
    • Boulanger, P.1
  • 29
    • 8644274165 scopus 로고    scopus 로고
    • Noise reduction in single-molecule fluorescence trajectories of folding proteins
    • Haran, G. 2004. Noise reduction in single-molecule fluorescence trajectories of folding proteins. Chem. Phys. 307: 137-145.
    • (2004) Chem. Phys. , vol.307 , pp. 137-145
    • Haran, G.1
  • 30
    • 0026607545 scopus 로고
    • Kinetics of protein-protein association explained by Brownian dynamics computer simulation
    • Northrup, S. H., and H. P. Erickson. 1992. Kinetics of protein-protein association explained by Brownian dynamics computer simulation. Proc. Natl. Acad. Sci. USA. 89: 3338-3342.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 3338-3342
    • Northrup, S.H.1    Erickson, H.P.2
  • 31
    • 0036308517 scopus 로고    scopus 로고
    • Characterization of a high-affinity complex between the bacterial outer membrane protein FhuA and the phage T5 protein pb5
    • DOI 10.1016/S0022-2836(02)00089-X
    • Plançon, L., C. Janmot, ..., P. Boulanger. 2002. Characterization of a high-affinity complex between the bacterial outer membrane protein FhuA and the phage T5 protein pb5. J. Mol. Biol. 318: 557-569. (Pubitemid 34734847)
    • (2002) Journal of Molecular Biology , vol.318 , Issue.2 , pp. 557-569
    • Plancon, L.1    Janmot, C.2    Le, M.M.3    Desmadril, M.4    Bonhivers, M.5    Letellier, L.6    Boulanger, P.7
  • 32
    • 46649087608 scopus 로고    scopus 로고
    • Phage T5 straight tail fiber is a multifunctional protein acting as a tape measure and carrying fusogenic and muralytic activities
    • Boulanger, P., P. Jacquot, ..., L. Letellier. 2008. Phage T5 straight tail fiber is a multifunctional protein acting as a tape measure and carrying fusogenic and muralytic activities. J. Biol. Chem, 283: 13556-13564.
    • (2008) J. Biol. Chem , vol.283 , pp. 13556-13564
    • Boulanger, P.1    Jacquot, P.2    Letellier, L.3
  • 34
    • 0019162308 scopus 로고
    • Evidence for heterogeneity in populations of T5 bacteriophage. II. Some particles are unable to inject their second-step-transfer DNA
    • Hulen, C., B. Labedan, and J. Legault-Demare. 1980. Evidence for heterogeneity in populations of T5 bacteriophage. II. Some particles are unable to inject their second-step-transfer DNA. J. Virol, 36: 633-638. (Pubitemid 11194302)
    • (1980) Journal of Virology , vol.36 , Issue.3 , pp. 633-638
    • Hulen, C.1    Labedan, B.2    Legault-Demare, J.3
  • 35
    • 35148815738 scopus 로고    scopus 로고
    • Measurements of single DNA molecule packaging dynamics in bacteriophage A reveal high forces, high motor processivity, and capsid transformations
    • Fuller, D. N., D. M. Raymer, ..., D. E. Smith. 2007. Measurements of single DNA molecule packaging dynamics in bacteriophage A reveal high forces, high motor processivity, and capsid transformations. J. Mol. Biol. 373: 1113-1122.
    • (2007) J. Mol. Biol. , vol.373 , pp. 1113-1122
    • Fuller, D.N.1    Raymer, D.M.2    Smith, D.E.3
  • 36
    • 36749028241 scopus 로고    scopus 로고
    • Single phage T4 DNA packaging motors exhibit large force generation, high velocity, and dynamic variability
    • Fuller, D. N., D. M. Raymer, ..., D. E. Smith. 2007. Single phage T4 DNA packaging motors exhibit large force generation, high velocity, and dynamic variability. Proc. Natl. Acad. Sci. USA. 104: 16868-16873.
    • (2007) Proc. Natl. Acad. Sci. USA. , vol.104 , pp. 16868-16873
    • Fuller, D.N.1    Raymer, D.M.2    Smith, D.E.3
  • 37
    • 34547430442 scopus 로고    scopus 로고
    • Ionic effects on viral DNA packaging and portal motor function in bacteriophage 029
    • Fuller, D. N., J. P. Rickgauer, ..., D. E. Smith. 2007. Ionic effects on viral DNA packaging and portal motor function in bacteriophage 029. Proc. Natl. Acad. Sci. USA. 104: 11245-11250.
    • (2007) Proc. Natl. Acad. Sci. USA. , vol.104 , pp. 11245-11250
    • Fuller, D.N.1    Rickgauer, J.P.2    Smith, D.E.3
  • 38
    • 24344474376 scopus 로고    scopus 로고
    • Effect of spermine and DNase on DNA release from bacteriophage T5
    • de Frutos, M., S. Brasiles, ..., E. Raspaud. 2005. Effect of spermine and DNase on DNA release from bacteriophage T5. Eur Phys J E Soft Matter. 17: 429-434.
    • (2005) Eur Phys J e Soft Matter. , vol.17 , pp. 429-434
    • De Frutos, M.1    Brasiles, S.2    Raspaud, E.3
  • 39
    • 76149131390 scopus 로고    scopus 로고
    • DNA-DNA interactions in bacteriophage capsids are responsible for the observed DNA knotting
    • Marenduzzo, D., E. Orlandini, ..., C. Micheletti. 2009. DNA-DNA interactions in bacteriophage capsids are responsible for the observed DNA knotting. Proc. Natl. Acad. Sci. USA. 106: 22269-22274.
    • (2009) Proc. Natl. Acad. Sci. USA. , vol.106 , pp. 22269-22274
    • Marenduzzo, D.1    Orlandini, E.2    Micheletti, C.3
  • 40
    • 0028875214 scopus 로고
    • Calcium controls phage T5 infection at the level of the Escherichia coli cytoplasmic membrane
    • Bonhivers, M., and L. Letellier. 1995. Calcium controls phage T5 infection at the level of the Escherichia coli cytoplasmic membrane. FEBS Lett. 374: 169-173.
    • (1995) FEBS Lett. , vol.374 , pp. 169-173
    • Bonhivers, M.1    Letellier, L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.