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Volumn 371, Issue 2, 2008, Pages 267-277

Three-dimensional architecture of the bacteriophage φ29 packaged genome and elucidation of its packaging process

Author keywords

29; Bacteriophage structure; Cryo electron microscopy; DNA packaging; Monte Carlo

Indexed keywords

DOUBLE STRANDED DNA;

EID: 38649114349     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2007.07.035     Document Type: Article
Times cited : (81)

References (41)
  • 1
    • 27744572947 scopus 로고    scopus 로고
    • Maturation of phage T7 involves structural modification of both shell and inner core components
    • Agirrezabala X., Martin-Benito J., Caston J.R., Miranda R., Valpuesta J.M., and Carrascosa J.L. Maturation of phage T7 involves structural modification of both shell and inner core components. EMBO J. 24 21 (2005) 3820-3829
    • (2005) EMBO J. , vol.24 , Issue.21 , pp. 3820-3829
    • Agirrezabala, X.1    Martin-Benito, J.2    Caston, J.R.3    Miranda, R.4    Valpuesta, J.M.5    Carrascosa, J.L.6
  • 2
    • 0037058959 scopus 로고    scopus 로고
    • Investigation of viral DNA packaging using molecular mechanics models
    • Arsuaga J., Tan R.K., Vazquez M., Sumners D.W., and Harvey S.C. Investigation of viral DNA packaging using molecular mechanics models. Biophys. Chem. 101-102 (2002) 475-484
    • (2002) Biophys. Chem. , vol.101-102 , pp. 475-484
    • Arsuaga, J.1    Tan, R.K.2    Vazquez, M.3    Sumners, D.W.4    Harvey, S.C.5
  • 3
    • 0020694653 scopus 로고
    • Morphogenesis of bacteriophage phi 29 of Bacillus subtilis: oriented and quantized in vitro packaging of DNA protein gp3
    • Bjornsti M.A., Reilly B.E., and Anderson D.L. Morphogenesis of bacteriophage phi 29 of Bacillus subtilis: oriented and quantized in vitro packaging of DNA protein gp3. J. Virol. 45 1 (1983) 383-396
    • (1983) J. Virol. , vol.45 , Issue.1 , pp. 383-396
    • Bjornsti, M.A.1    Reilly, B.E.2    Anderson, D.L.3
  • 4
    • 0006594183 scopus 로고
    • Ion etching bacteriophage T4: support for a spiral-fold model of packaged DNA
    • Black L.W., Newcomb W.W., Boring J.W., and Brown J.C. Ion etching bacteriophage T4: support for a spiral-fold model of packaged DNA. Proc. Natl. Acad. Sci. USA 82 23 (1985) 7960-7964
    • (1985) Proc. Natl. Acad. Sci. USA , vol.82 , Issue.23 , pp. 7960-7964
    • Black, L.W.1    Newcomb, W.W.2    Boring, J.W.3    Brown, J.C.4
  • 6
    • 33744811672 scopus 로고    scopus 로고
    • Cryo-EM asymmetric reconstruction of bacteriophage P22 reveals organization of its DNA packaging and infecting machinery
    • Chang J., Weigele P., King J., Chiu W., and Jiang W. Cryo-EM asymmetric reconstruction of bacteriophage P22 reveals organization of its DNA packaging and infecting machinery. Structure 14 6 (2006) 1073-1082
    • (2006) Structure , vol.14 , Issue.6 , pp. 1073-1082
    • Chang, J.1    Weigele, P.2    King, J.3    Chiu, W.4    Jiang, W.5
  • 7
    • 0018932980 scopus 로고
    • DNA packaging by the double-stranded DNA bacteriophages
    • Earnshaw W.C., and Casjens S.R. DNA packaging by the double-stranded DNA bacteriophages. Cell 21 2 (1980) 319-331
    • (1980) Cell , vol.21 , Issue.2 , pp. 319-331
    • Earnshaw, W.C.1    Casjens, S.R.2
  • 8
    • 0017657414 scopus 로고
    • DNA arrangement in isometric phage heads
    • Earnshaw W.C., and Harrison S.C. DNA arrangement in isometric phage heads. Nature 268 5621 (1977) 598-602
    • (1977) Nature , vol.268 , Issue.5621 , pp. 598-602
    • Earnshaw, W.C.1    Harrison, S.C.2
  • 10
    • 33745759318 scopus 로고    scopus 로고
    • Langevin dynamics simulations of genome packing in bacteriophage
    • Forrey C., and Muthukumar M. Langevin dynamics simulations of genome packing in bacteriophage. Biophys. J. 91 1 (2006) 25-41
    • (2006) Biophys. J. , vol.91 , Issue.1 , pp. 25-41
    • Forrey, C.1    Muthukumar, M.2
  • 12
    • 0031567019 scopus 로고    scopus 로고
    • The bacteriophage phi29 packaging proteins supercoil the DNA ends
    • Grimes S., and Anderson D. The bacteriophage phi29 packaging proteins supercoil the DNA ends. J. Mol. Biol. 266 5 (1997) 901-914
    • (1997) J. Mol. Biol. , vol.266 , Issue.5 , pp. 901-914
    • Grimes, S.1    Anderson, D.2
  • 13
    • 0036052845 scopus 로고    scopus 로고
    • Bacteriophage phi 29 DNA packaging protein
    • Grimes S., Jardine P.J., and Anderson D. Bacteriophage phi 29 DNA packaging protein. Adv. Virus Res. 58 (2002) 255-294
    • (2002) Adv. Virus Res. , vol.58 , pp. 255-294
    • Grimes, S.1    Jardine, P.J.2    Anderson, D.3
  • 14
    • 0020362320 scopus 로고
    • Flow dichroism of capsid DNA phages: I. Fast and slow T4B
    • Hall S.B., and Schellman J.A. Flow dichroism of capsid DNA phages: I. Fast and slow T4B. Biopolymers 21 10 (1982) 1991-2010
    • (1982) Biopolymers , vol.21 , Issue.10 , pp. 1991-2010
    • Hall, S.B.1    Schellman, J.A.2
  • 15
    • 0020467194 scopus 로고
    • Flow dichroism of capsid DNA phages: II. Effect of DNA deletions and intercalating dyes
    • Hall S.B., and Schellman J.A. Flow dichroism of capsid DNA phages: II. Effect of DNA deletions and intercalating dyes. Biopolymers 21 10 (1982) 2011-2031
    • (1982) Biopolymers , vol.21 , Issue.10 , pp. 2011-2031
    • Hall, S.B.1    Schellman, J.A.2
  • 16
    • 0035909970 scopus 로고    scopus 로고
    • Cryoelectron microscopy of lambda phage DNA condensates in vitreous ice: the fine structure of DNA toroids
    • Hud N.V., and Downing K.H. Cryoelectron microscopy of lambda phage DNA condensates in vitreous ice: the fine structure of DNA toroids. Proc. Natl. Acad. Sci. USA 98 26 (2001) 14925-14930
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , Issue.26 , pp. 14925-14930
    • Hud, N.V.1    Downing, K.H.2
  • 17
    • 0028906570 scopus 로고
    • A constant radius of curvature model for the organization of DNA in toroidal condensates
    • Hud N.V., Downing K.H., and Balhorn R. A constant radius of curvature model for the organization of DNA in toroidal condensates. Proc. Natl. Acad. Sci. USA 92 8 (1995) 3581-3585
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , Issue.8 , pp. 3581-3585
    • Hud, N.V.1    Downing, K.H.2    Balhorn, R.3
  • 18
    • 33744805436 scopus 로고    scopus 로고
    • DNA packaging in double-stranded DNA bacteriophages
    • Calendar R. (Ed), Oxford Press, Oxford
    • Jardine P.J., and Anderson D. DNA packaging in double-stranded DNA bacteriophages. In: Calendar R. (Ed). The Bacteriophages (2006), Oxford Press, Oxford
    • (2006) The Bacteriophages
    • Jardine, P.J.1    Anderson, D.2
  • 19
    • 31844435708 scopus 로고    scopus 로고
    • Structure of epsilon15 bacteriophage reveals genome organization and DNA packaging/injection apparatus
    • Jiang W., Chang J., Jakana J., Weigele P., King J., and Chiu W. Structure of epsilon15 bacteriophage reveals genome organization and DNA packaging/injection apparatus. Nature 439 7076 (2006) 612-616
    • (2006) Nature , vol.439 , Issue.7076 , pp. 612-616
    • Jiang, W.1    Chang, J.2    Jakana, J.3    Weigele, P.4    King, J.5    Chiu, W.6
  • 20
    • 0043130459 scopus 로고    scopus 로고
    • A director-field model of DNA packaging in viral capsids
    • Klug W.S., and Ortiz M. A director-field model of DNA packaging in viral capsids. J. Mech. Phys. Solids 51 10 (2003) 1815-1847
    • (2003) J. Mech. Phys. Solids , vol.51 , Issue.10 , pp. 1815-1847
    • Klug, W.S.1    Ortiz, M.2
  • 21
    • 10844240579 scopus 로고    scopus 로고
    • Three-dimensional director-field predictions of viral DNA packing arrangements
    • Klug W.S., Feldmann M.T., and Ortiz M. Three-dimensional director-field predictions of viral DNA packing arrangements. Comput. Mech. 35 2 (2005) 146-152
    • (2005) Comput. Mech. , vol.35 , Issue.2 , pp. 146-152
    • Klug, W.S.1    Feldmann, M.T.2    Ortiz, M.3
  • 22
    • 84982060514 scopus 로고
    • Rontgenuntersuchung geloster Fadenmolekule
    • Kratky O. Rontgenuntersuchung geloster Fadenmolekule. Rec. Trav. Chim. Pays-Bas. 68 (1949) 1106-1123
    • (1949) Rec. Trav. Chim. Pays-Bas. , vol.68 , pp. 1106-1123
    • Kratky, O.1
  • 23
    • 1242336964 scopus 로고    scopus 로고
    • Packaging double-helical DNA into viral capsids
    • LaMarque J.C., Le T.V., and Harvey S.C. Packaging double-helical DNA into viral capsids. Biopolymers 73 3 (2004) 348-355
    • (2004) Biopolymers , vol.73 , Issue.3 , pp. 348-355
    • LaMarque, J.C.1    Le, T.V.2    Harvey, S.C.3
  • 25
    • 0023341103 scopus 로고
    • Organization of double-stranded DNA in bacteriophages: a study by cryo-electron microscopy of vitrified samples
    • Lepault J., Dubochet J., Baschong W., and Kellenberger E. Organization of double-stranded DNA in bacteriophages: a study by cryo-electron microscopy of vitrified samples. EMBO J. 6 5 (1987) 1507-1512
    • (1987) EMBO J. , vol.6 , Issue.5 , pp. 1507-1512
    • Lepault, J.1    Dubochet, J.2    Baschong, W.3    Kellenberger, E.4
  • 26
    • 0033377664 scopus 로고    scopus 로고
    • EMAN: semiautomated software for high-resolution single-particle reconstructions
    • Ludtke S.J., Baldwin P.R., and Chiu W. EMAN: semiautomated software for high-resolution single-particle reconstructions. J. Struct. Biol. 128 1 (1999) 82-97
    • (1999) J. Struct. Biol. , vol.128 , Issue.1 , pp. 82-97
    • Ludtke, S.J.1    Baldwin, P.R.2    Chiu, W.3
  • 27
    • 0006852302 scopus 로고
    • X-ray diffraction studies of bacterial viruses
    • North A.C., and Rich A. X-ray diffraction studies of bacterial viruses. Nature 191 (1961) 1242-1245
    • (1961) Nature , vol.191 , pp. 1242-1245
    • North, A.C.1    Rich, A.2
  • 28
    • 0031688164 scopus 로고    scopus 로고
    • Hexagonally packed DNA within bacteriophage T7 stabilized by curvature stress
    • Odijk T. Hexagonally packed DNA within bacteriophage T7 stabilized by curvature stress. Biophys. J. 75 3 (1998) 1223-1227
    • (1998) Biophys. J. , vol.75 , Issue.3 , pp. 1223-1227
    • Odijk, T.1
  • 29
    • 0035864288 scopus 로고    scopus 로고
    • The structure of isometric capsids of bacteriophage T4
    • Olson N.H., Gingery M., Eiserling F.A., and Baker T.S. The structure of isometric capsids of bacteriophage T4. Virology 279 2 (2001) 385-391
    • (2001) Virology , vol.279 , Issue.2 , pp. 385-391
    • Olson, N.H.1    Gingery, M.2    Eiserling, F.A.3    Baker, T.S.4
  • 30
    • 33846113838 scopus 로고    scopus 로고
    • Structural and thermodynamic principles of viral packaging
    • Petrov A.S., and Harvey S.C. Structural and thermodynamic principles of viral packaging. Structure 15 1 (2007) 21-27
    • (2007) Structure , vol.15 , Issue.1 , pp. 21-27
    • Petrov, A.S.1    Harvey, S.C.2
  • 31
    • 0001533502 scopus 로고
    • Measurement of the repulsive force between polyelectrolyte molecules in ionic solution: hydration forces between parallel DNA double helices
    • Rau D.C., Lee B., and Parsegian V.A. Measurement of the repulsive force between polyelectrolyte molecules in ionic solution: hydration forces between parallel DNA double helices. Proc. Natl. Acad. Sci. USA 81 9 (1984) 2621-2625
    • (1984) Proc. Natl. Acad. Sci. USA , vol.81 , Issue.9 , pp. 2621-2625
    • Rau, D.C.1    Lee, B.2    Parsegian, V.A.3
  • 32
    • 0015839714 scopus 로고
    • Mode of DNA packing within bacteriophage heads
    • Richards K.E., Williams R.C., and Calendar R. Mode of DNA packing within bacteriophage heads. J. Mol. Biol. 78 2 (1973) 255-259
    • (1973) J. Mol. Biol. , vol.78 , Issue.2 , pp. 255-259
    • Richards, K.E.1    Williams, R.C.2    Calendar, R.3
  • 33
    • 0023042589 scopus 로고
    • Arrangement of double-stranded DNA packaged in bacteriophage capsids. An alternative model
    • Serwer P. Arrangement of double-stranded DNA packaged in bacteriophage capsids. An alternative model. J. Mol. Biol. 190 3 (1986) 509-512
    • (1986) J. Mol. Biol. , vol.190 , Issue.3 , pp. 509-512
    • Serwer, P.1
  • 35
    • 0035909370 scopus 로고    scopus 로고
    • The bacteriophage straight phi29 portal motor can package DNA against a large internal force
    • Smith D.E., Tans S.J., Smith S.B., Grimes S., Anderson D.L., and Bustamante C. The bacteriophage straight phi29 portal motor can package DNA against a large internal force. Nature 413 6857 (2001) 748-752
    • (2001) Nature , vol.413 , Issue.6857 , pp. 748-752
    • Smith, D.E.1    Tans, S.J.2    Smith, S.B.3    Grimes, S.4    Anderson, D.L.5    Bustamante, C.6
  • 36
    • 22244483736 scopus 로고    scopus 로고
    • DNA packaging in bacteriophage: is twist important?
    • Spakowitz A.J., and Wang Z.G. DNA packaging in bacteriophage: is twist important?. Biophys. J. 88 6 (2005) 3912-3923
    • (2005) Biophys. J. , vol.88 , Issue.6 , pp. 3912-3923
    • Spakowitz, A.J.1    Wang, Z.G.2
  • 38
    • 0024967168 scopus 로고
    • Prohead RNA of bacteriophage phi 29: size, stoichiometry and biological activity
    • Wichitwechkarn J., Bailey S., Bodley J.W., and Anderson D. Prohead RNA of bacteriophage phi 29: size, stoichiometry and biological activity. Nucleic Acids Res. 17 9 (1989) 3459-3468
    • (1989) Nucleic Acids Res. , vol.17 , Issue.9 , pp. 3459-3468
    • Wichitwechkarn, J.1    Bailey, S.2    Bodley, J.W.3    Anderson, D.4
  • 39
    • 0021040481 scopus 로고
    • Tests of spool models for DNA packaging in phage lambda
    • Widom J., and Baldwin R.L. Tests of spool models for DNA packaging in phage lambda. J. Mol. Biol. 171 4 (1983) 419-437
    • (1983) J. Mol. Biol. , vol.171 , Issue.4 , pp. 419-437
    • Widom, J.1    Baldwin, R.L.2


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