-
3
-
-
2542637306
-
Mitogen-activated protein kinase phosphatase-1 is overexpressed in non-small cell lung cancer and is an independent predictor of outcome in patients
-
Vicent S, Garayoa M, Lopez-Picazo JM, et al: Mitogen-activated protein kinase phosphatase-1 is overexpressed in non-small cell lung cancer and is an independent predictor of outcome in patients. Clin Cancer Res 10:3639-3649, 2004.
-
(2004)
Clin Cancer Res
, vol.10
, pp. 3639-3649
-
-
Vicent, S.1
Garayoa, M.2
Lopez-Picazo, J.M.3
-
4
-
-
0037182759
-
CL100 expression is down-regulated in advanced epithelial ovarian cancer and its re-expression decreases its malignant potential
-
Manzano RG, Montuenga LM, Dayton M, et al: CL100 expression is down-regulated in advanced epithelial ovarian cancer and its re-expression decreases its malignant potential. Oncogene 21:4435-4447, 2002.
-
(2002)
Oncogene
, vol.21
, pp. 4435-4447
-
-
Manzano, R.G.1
Montuenga, L.M.2
Dayton, M.3
-
5
-
-
0242333835
-
Normalization of cDNA microarray data
-
Smyth GK and Speed T: Normalization of cDNA microarray data. Methods 31:265-273, 2003.
-
(2003)
Methods
, vol.31
, pp. 265-273
-
-
Smyth, G.K.1
Speed, T.2
-
6
-
-
34250652449
-
Strong time dependence of the 76-gene prognostic signature for node-negative breast cancer patients in the TRANSBIG multicenter independent validation series
-
Desmedt C, Piette F, Loi S, et al: Strong time dependence of the 76-gene prognostic signature for node-negative breast cancer patients in the TRANSBIG multicenter independent validation series. Clin Cancer Res 13:3207-3214, 2007.
-
(2007)
Clin Cancer Res
, vol.13
, pp. 3207-3214
-
-
Desmedt, C.1
Piette, F.2
Loi, S.3
-
7
-
-
78650735473
-
The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models
-
Shi L, Campbell G, Jones WD, et al: The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models. Nat Biotechnol 28:827-838, 2010.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 827-838
-
-
Shi, L.1
Campbell, G.2
Jones, W.D.3
-
8
-
-
13844310310
-
Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer
-
Wang Y, Klijn JG, Zhang Y, et al: Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer. Lancet 365:671-679, 2005.
-
(2005)
Lancet
, vol.365
, pp. 671-679
-
-
Wang, Y.1
Klijn, J.G.2
Zhang, Y.3
-
9
-
-
0037137519
-
A gene-expression signature as a predictor of survival in breast cancer
-
van de Vijver MJ, V, He YD, Van't Veer LJ, et al: A gene-expression signature as a predictor of survival in breast cancer. N Engl J Med 347:1999-2009, 2002.
-
(2002)
N Engl J Med
, vol.347
, pp. 1999-2009
-
-
Van De Vijver, M.J.V.1
He, Y.D.2
Van't Veer, L.J.3
-
10
-
-
77954347142
-
Discovering causal signaling pathways through gene-expression patterns
-
Parikh JR, Klinger B, Xia Y, Marto JA and Bluthgen N: Discovering causal signaling pathways through gene-expression patterns. Nucleic Acids Res 38: W109-W117, 2010.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. W109-W117
-
-
Parikh, J.R.1
Klinger, B.2
Xia, Y.3
Marto, J.A.4
Bluthgen, N.5
-
11
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian A, Tamayo P, Mootha VK, et al: Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci USA 102:15545-15550, 2005.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
-
12
-
-
19344375744
-
Semi-supervised methods to predict patient survival from gene expression data
-
Bair E and Tibshirani R: Semi-supervised methods to predict patient survival from gene expression data. PLoS Biol 2: E108, 2004.
-
(2004)
PLoS Biol
, vol.2
, pp. E108
-
-
Bair, E.1
Tibshirani, R.2
-
13
-
-
78149262301
-
GeneMANIA Cytoscape plugin: Fast gene function predictions on the desktop
-
Montojo J, Zuberi K, Rodriguez H, et al: GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop. Bioinformatics 26:2927-2928, 2010.
-
(2010)
Bioinformatics
, vol.26
, pp. 2927-2928
-
-
Montojo, J.1
Zuberi, K.2
Rodriguez, H.3
-
14
-
-
47549107689
-
GeneMANIA: A real-time multiple association network integration algorithm for predicting gene function
-
Mostafavi S, Ray D, Warde-Farley D, Grouios C and Morris Q: GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function. Genome Biol 9(Suppl 1):S4, 2008.
-
(2008)
Genome Biol
, vol.9
, pp. S4
-
-
Mostafavi, S.1
Ray, D.2
Warde-Farley, D.3
Grouios, C.4
Morris, Q.5
-
15
-
-
77954269901
-
The GeneMANIA prediction server: Biological network integration for gene prioritization and predicting gene function
-
Warde-Farley D, Donaldson SL, Comes O, et al: The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function. Nucleic Acids Res 38: W214-W220, 2010.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. W214-W220
-
-
Warde-Farley, D.1
Donaldson, S.L.2
Comes, O.3
-
16
-
-
0034680102
-
Molecular portraits of human breast tumours
-
Perou CM, Sorlie T, Eisen MB, et al: Molecular portraits of human breast tumours. Nature 406:747-752, 2000.
-
(2000)
Nature
, vol.406
, pp. 747-752
-
-
Perou, C.M.1
Sorlie, T.2
Eisen, M.B.3
-
17
-
-
62449131093
-
Supervised risk predictor of breast cancer based on intrinsic subtypes
-
Parker JS, Mullins M, Cheang MC, et al: Supervised risk predictor of breast cancer based on intrinsic subtypes. J Clin Oncol 27:1160-1167, 2009.
-
(2009)
J Clin Oncol
, vol.27
, pp. 1160-1167
-
-
Parker, J.S.1
Mullins, M.2
Cheang, M.C.3
-
18
-
-
33646874546
-
The molecular portraits of breast tumors are conserved across microarray platforms
-
Hu Z, Fan C, Oh DS, et al: The molecular portraits of breast tumors are conserved across microarray platforms. BMC Genomics 7:96, 2006.
-
(2006)
BMC Genomics
, vol.7
, pp. 96
-
-
Hu, Z.1
Fan, C.2
Oh, D.S.3
-
19
-
-
67651148274
-
Evidence that inositol polyphosphate 4-phosphatase type II is a tumor suppressor that inhibits PI3K signaling
-
Gewinner C, Wang ZC, Richardson A, et al: Evidence that inositol polyphosphate 4-phosphatase type II is a tumor suppressor that inhibits PI3K signaling. Cancer Cell 16:115-125, 2009.
-
(2009)
Cancer Cell
, vol.16
, pp. 115-125
-
-
Gewinner, C.1
Wang, Z.C.2
Richardson, A.3
-
20
-
-
78650675585
-
Inositol polyphosphate 4-phosphatase II regulates PI3K/Akt signaling and is lost in human basal-like breast cancers
-
Fedele CG, Ooms LM, Ho M, et al: Inositol polyphosphate 4-phosphatase II regulates PI3K/Akt signaling and is lost in human basal-like breast cancers. Proc Natl Acad Sci USA 107:22231-22236, 2010.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 22231-22236
-
-
Fedele, C.G.1
Ooms, L.M.2
Ho, M.3
-
21
-
-
63849329936
-
Frequent PTEN genomic alterations and activated phosphatidylinositol 3-kinase pathway in basal-like breast cancer cells
-
Marty B, Maire V, Gravier E, et al: Frequent PTEN genomic alterations and activated phosphatidylinositol 3-kinase pathway in basal-like breast cancer cells. Breast Cancer Res 10: R101, 2008.
-
(2008)
Breast Cancer Res
, vol.10
, pp. R101
-
-
Marty, B.1
Maire, V.2
Gravier, E.3
-
22
-
-
65549165975
-
Genetic alterations and oncogenic pathways associated with breast cancer subtypes
-
Hu X, Stern HM, Ge L, et al: Genetic alterations and oncogenic pathways associated with breast cancer subtypes. Mol Cancer Res 7:511-522, 2009.
-
(2009)
Mol Cancer Res
, vol.7
, pp. 511-522
-
-
Hu, X.1
Stern, H.M.2
Ge, L.3
-
23
-
-
74049107249
-
PI3K pathway activation in breast cancer is associated with the basal-like phenotype and cancer-specific mortality
-
Lopez-Knowles E, O'Toole SA, McNeil CM, et al: PI3K pathway activation in breast cancer is associated with the basal-like phenotype and cancer-specific mortality. Int J Cancer 126:1121-1131, 2010.
-
(2010)
Int J Cancer
, vol.126
, pp. 1121-1131
-
-
Lopez-Knowles, E.1
O'Toole, S.A.2
McNeil, C.M.3
-
24
-
-
33745700217
-
Integrative genomics identifies distinct molecular classes of neuroblastoma and shows that multiple genes are targeted by regional alterations in DNA copy number
-
Wang Q, Diskin S, Rappaport E, et al: Integrative genomics identifies distinct molecular classes of neuroblastoma and shows that multiple genes are targeted by regional alterations in DNA copy number. Cancer Res 66:6050-6062, 2006.
-
(2006)
Cancer Res
, vol.66
, pp. 6050-6062
-
-
Wang, Q.1
Diskin, S.2
Rappaport, E.3
-
25
-
-
34250680520
-
Gene expression analysis of soft tissue sarcomas: Characterization and reclassification of malignant fibrous histiocytoma
-
Nakayama R, Nemoto T, Takahashi H, et al: Gene expression analysis of soft tissue sarcomas: characterization and reclassification of malignant fibrous histiocytoma. Mod Pathol 20:749-759, 2007.
-
(2007)
Mod Pathol
, vol.20
, pp. 749-759
-
-
Nakayama, R.1
Nemoto, T.2
Takahashi, H.3
-
26
-
-
84856252361
-
Epidermal growth factor receptor (EGFR)-mediated positive feedback of proteintyrosine phosphatase epsilon (PTPepsilon) on ERK1/2 and AKT protein pathways is required for survival of human breast cancer cells
-
Nunes-Xavier CE, Elson A and Pulido R: Epidermal growth factor receptor (EGFR)-mediated positive feedback of proteintyrosine phosphatase epsilon (PTPepsilon) on ERK1/2 and AKT protein pathways is required for survival of human breast cancer cells. J Biol Chem 287:3433-3444, 2012.
-
(2012)
J Biol Chem
, vol.287
, pp. 3433-3444
-
-
Nunes-Xavier, C.E.1
Elson, A.2
Pulido, R.3
-
27
-
-
77955907279
-
The dual-specificity MAP kinase phosphatases: Critical roles in development and cancer
-
Bermudez O, Pages G and Gimond C: The dual-specificity MAP kinase phosphatases: critical roles in development and cancer. Am J Physiol Cell Physiol 299: C189-C202, 2010.
-
(2010)
Am J Physiol Cell Physiol
, vol.299
, pp. C189-C202
-
-
Bermudez, O.1
Pages, G.2
Gimond, C.3
-
28
-
-
84884180105
-
SurvExpress: An online biomarker validation tool and database for cancer gene expression data using survival analysis
-
Aguirre-Gamboa R, Gomez-Rueda H, Martinez-Ledesma E, et al: SurvExpress: an online biomarker validation tool and database for cancer gene expression data using survival analysis. PLoS One 8: e74250, 2013.
-
(2013)
PLoS One
, vol.8
, pp. e74250
-
-
Aguirre-Gamboa, R.1
Gomez-Rueda, H.2
Martinez-Ledesma, E.3
-
29
-
-
77953992438
-
Expression profile of tyrosine phosphatases in HER2 breast cancer cells and tumors
-
Lucci MA, Orlandi R, Triulzi T, Tagliabue E, Balsari A and Villa-Moruzzi E: Expression profile of tyrosine phosphatases in HER2 breast cancer cells and tumors. Cell Oncol 32:361-372, 2010.
-
(2010)
Cell Oncol
, vol.32
, pp. 361-372
-
-
Lucci, M.A.1
Orlandi, R.2
Triulzi, T.3
Tagliabue, E.4
Balsari, A.5
Villa-Moruzzi, E.6
-
30
-
-
58149279840
-
Expression of the putative tumor suppressor gene PTPN13/PTPL1 is an independent prognostic marker for overall survival in breast cancer
-
Revillion F, Puech C, Rabenoelina F, Chalbos D, Peyrat JP and Freiss G: Expression of the putative tumor suppressor gene PTPN13/PTPL1 is an independent prognostic marker for overall survival in breast cancer. Int J Cancer 124:638-643, 2009.
-
(2009)
Int J Cancer
, vol.124
, pp. 638-643
-
-
Revillion, F.1
Puech, C.2
Rabenoelina, F.3
Chalbos, D.4
Peyrat, J.P.5
Freiss, G.6
-
31
-
-
84859412054
-
Comprehensive predictive biomarker analysis for MEK inhibitor GSK1120212
-
Jing J, Greshock J, Holbrook JD, et al: Comprehensive predictive biomarker analysis for MEK inhibitor GSK1120212. Mol Cancer Ther 11:720-729, 2012.
-
(2012)
Mol Cancer Ther
, vol.11
, pp. 720-729
-
-
Jing, J.1
Greshock, J.2
Holbrook, J.D.3
-
32
-
-
33645730357
-
Activation of mitogen-activated protein kinase in estrogen receptor alpha-positive breast cancer cells in vitro induces an in vivo molecular phenotype of estrogen receptor alpha-negative human breast tumors
-
Creighton CJ, Hilger AM, Murthy S, Rae JM, Chinnaiyan AM and El-Ashry D: Activation of mitogen-activated protein kinase in estrogen receptor alpha-positive breast cancer cells in vitro induces an in vivo molecular phenotype of estrogen receptor alpha-negative human breast tumors. Cancer Res 66:3903-3911, 2006.
-
(2006)
Cancer Res
, vol.66
, pp. 3903-3911
-
-
Creighton, C.J.1
Hilger, A.M.2
Murthy, S.3
Rae, J.M.4
Chinnaiyan, A.M.5
El-Ashry, D.6
-
33
-
-
35148885729
-
A functional genetic approach identifies the PI3K pathway as a major determinant of trastuzumab resistance in breast cancer
-
Berns K, Horlings HM, Hennessy BT, et al: A functional genetic approach identifies the PI3K pathway as a major determinant of trastuzumab resistance in breast cancer. Cancer Cell 12:395-402, 2007.
-
(2007)
Cancer Cell
, vol.12
, pp. 395-402
-
-
Berns, K.1
Horlings, H.M.2
Hennessy, B.T.3
-
34
-
-
84894557306
-
Rapid induction of apoptosis by PI3K inhibitors is dependent upon their transient inhibition of RAS-ERK signaling
-
Will M, Qin AC, Toy W, et al: Rapid induction of apoptosis by PI3K inhibitors is dependent upon their transient inhibition of RAS-ERK signaling. Cancer Discov 4:334-347, 2014.
-
(2014)
Cancer Discov
, vol.4
, pp. 334-347
-
-
Will, M.1
Qin, A.C.2
Toy, W.3
-
35
-
-
0038244058
-
Gene expression predictors of breast cancer outcomes
-
Huang E, Cheng SH, Dressman H, et al: Gene expression predictors of breast cancer outcomes. Lancet 361:1590-1596, 2003.
-
(2003)
Lancet
, vol.361
, pp. 1590-1596
-
-
Huang, E.1
Cheng, S.H.2
Dressman, H.3
-
36
-
-
84863726932
-
Profiling of residual breast cancers after neoadjuvant chemotherapy identifies DUSP4 deficiency as a mechanism of drug resistance
-
Balko JM, Cook RS, Vaught DB, et al: Profiling of residual breast cancers after neoadjuvant chemotherapy identifies DUSP4 deficiency as a mechanism of drug resistance. Nat Med 18:1052-1059, 2012.
-
(2012)
Nat Med
, vol.18
, pp. 1052-1059
-
-
Balko, J.M.1
Cook, R.S.2
Vaught, D.B.3
|