Roussoellaceae, a new pleosporalean family to accommodate the genera Neoroussoella gen. nov., Roussoella and Roussoellopsis

Phytotaxa

Volumn 181, Issue 1, 2014, Pages 1-33

  Liu, Jian Kui ^a,b   Phookamsak, Rungtiwa ^b   Dai, Dong Qin ^b   Tanaka, Kazuaki ^c   Jones, E B Gareth ^d   Xu, Jian Chu ^e   Chukeatirote, Ekachai ^b   Hyde, Kevin D ^a,b  

^a KUNMING INSTITUTE OF BOTANY   (China)

^b MAE FAH LUANG UNIVERSITY   (Thailand)

^c HIROSAKI UNIVERSITY   (Japan)

^d KING SAUD UNIVERSITY   (Saudi Arabia)

^e WORLD AGROFORESTRY CENTRE ICRAF   (Kenya)

Author keywords

Asexual morphs; Epitype; Phylogeny; Pleosporales; Taxonomy; Type

Indexed keywords

PLEOSPORALES; ROUSSOELLA;

EID: 84907530278     PISSN: 11793155     EISSN: 11793163     Source Type: Journal    
DOI: 10.11646/phytotaxa.181.1.1     Document Type: Article

References (59)

1. Alves, A., Correia, A. & Phillips, A. J. L. (2006) Multi-gene genealogies and morphological data support Diplodia cupressi sp. nov., previously recognized as D. pinea f. sp. cupressi, as a distinct species. Fungal Diversity 23: 1-15.
2. Aptroot, A. (1995a) Redisposition of some species excluded from Didymosphaeria (Ascomycotina). Nova Hedwigia 60: 325-379.
3. Aptroot, A. (1995b) A monograph of Didymosphaeria. Studies in Mycology 37: 1-161.
4. Ariyawansa, H. A., Camporesi, E., Thambugala, K. M., Mapook, A., Kang, J. C. & Hyde, K. D. (2014) Confusion surrounding Didymosphaeria-phylogenetic and morphological evidence suggest Didymosphaeriaceae is not a distinct family. Phytotaxa 176(1): 102-119. http://dx.doi.org/10.11646/phytotaxa.176.1.12.
5. Boonmee, S., Zhang, Y., Chomnunti, P., Chukeatirote, E., Tsui, C. K. M., Bahkali, A. H. & Hyde, K. D. (2011) Revision of lignicolous Tubeufiaceae based on morphological reexamination and phylogenetic analysis. Fungal Diversity 51: 63-102. http://dx. doi. org/10. 1007/s13225-011-0147-4.
6. Cannon, P. F. & Kirk, P. M. (2007) Fungal families of the world. CABI, UK, 456 pp.
7. Chomnunti, P., Schoch, C. L., Aguirre-Hudson, B., Ko-Ko, T. W., Hongsanan, S., Jones, E. B. G., Kodsueb, R., Phookamsak, R., Chukeatirote, E., Bahkali, A. H. & Hyde, K. D. (2011) Capnodiaceae. Fungal Diversity 51: 103-134. http://dx. doi. org/10. 1007/s13225-011-0145-6.
8. Crous, P. W., Braun, U., Hunter, G., Wingfield, M. J., Verkley, G., Shin, H. D., Nakashima, C. & Groenewald, J. (2012) Phylogenetic lineages in Pseudocercospora. Studies in Mycology 75: 37-114. http://dx. doi. org/10. 3114/sim0005.
9. Crous, P. W., Schoch, CL, Hyde, K. D., Wood, A, Gueidan, C., de Hoog, G. S. & Groenewald, J. Z. (2009) Phylogenetic lineages in the Capnodiales. Studies in Mycology 64: 17-47. http://dx. doi. org/10. 3114/sim. 2009. 64. 02.
10. Crous, P. W., Slippers, B., Wingfield, M. J., Rheeder, J., Marasas, W. F. O., Philips, A. J. L., Alves, A., Burgess, T. I., Barber, P. A. & Groenewald, J. Z. (2006) Phylogenetic lineages in the Botryosphaeriaceae. Studies in Mycology 55: 235-253. http://dx. doi. org/10. 3114/sim. 55. 1. 235.
11. De Gruyter, J., Woudenberg, J., Aveskamp, M., Verkley, G., Groenewald, J. & Crous, P. W. (2012) Redisposition of Phoma-like anamorphs in Pleosporales. Studies in Mycology 75: 1-36. http://dx. doi. org/10. 3114/sim0004.
12. De Gruyter, J., Woudenberg, J., Aveskamp, M., Verkley, G., Groenewald, J. & Crous, P. W. (2010) Systematic reappraisal of species in Phoma section Paraphoma, Pyrenochaeta and Pleurophoma. Mycologia 102: 1066-1081. http://dx. doi. org/10. 3852/09-240.
13. Eriksson, O. (1981) The families of bitunicate Ascomycetes. Opera Botanica 60: 1-220.
14. Eriksson, O (1984) Outline of the ascomycetes-1984. Systema Ascomycetum 3: 1-72.
15. Hall, T. A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. In: Nucleic Acids Symposium Series 41 1999: 95-98.
16. Hambleton, S., Tsuneda, A. & Currah, R. S. (2003) Comparative morphology and phylogenetic placement of two microsclerotial black fungi from Sphagnum. Mycologia 95: 959-975. http://dx. doi. org/10. 2307/3762024.
17. Hillis, D. M. & Bull, J. J. (1993) An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology 42: 182. http://dx. doi. org/10. 2307/2992540.
18. Hino, I. & Katumoto, K. (1954) Illustrationes fungorum bambusicolorum. II. Bulletin of the Faculty of Agriculture Yamaguchi University 5: 213-234.
19. Hino, I. & Katumoto, K. (1965) Notes on bambusicolous fungi (1). Journal of Japanese Botany 40: 81-89.
20. Höhnel, F. (1919) Fragmente zur Mykologie XXIII. Sitzungsber Akad Wiss Wien, Math-Naturwiss Kl, Abt 1 128: 535-625.
21. Hyde, K. D. (1997) The genus Roussoëlla, including two new species from palms in Cuyabeno, Ecuador. Mycological Research 101: 609-616. http://dx. doi. org/10. 1017/s0953756296003061.
22. Hyde, K. D., Eriksson, O. E. & Yue, J. Z. (1996) Roussoëlla, an ascomycete genus of uncertain relationships with a Cytoplea anamorph. Mycological Research 100: 1522-1528. http://dx. doi. org/10. 1016/s0953-7562(96)80089-x.
23. Hyde, K. D., Jones, E. B. G., Liu, J. K., Ariyawansa, H., Boehm, E., Boonmee, S., Braun, U., Chomnunti, Crous, P. W., Dai, D. Q., Diederich, P., Dissanayake, A., Doilom, M., Doveri, F., Hongsanan, S., Jayawardena, R., Lawrey, J. D., Li, Y. M., Liu, Y. X., Lücking, R., Monkai, J., Muggia, L., Nelsen, M. P., Pang, K. L., Phookamsak, R., Senanayake, L. C., Shearer, C. A., Suetrong, S., Tanaka, K., Thambugala, K. M., Wijayawardene, N. N., Wikee, S., Wu, H. X., Zhang, Y., Aguirre-Hudson, B., Alias, S. A., Aptroot, A., Bahkali, A., Bezerra, J. L., Bhat, D. J., Camporesi, E., Chukeatirote, E., Gueidan, C., Hawksworth, D. L., Hirayama, K., De Hoog, S., Kang, J. C., Knudsen, K., li, W. J., Li, X. H., liu, Z. Y., Mapook, A., McKenzie, E. H. C., Miller, A. N., Mortimer, P., Phillips, A. J. L., Raja, H. A., Scheuer, C., Schumm, C., Taylor, J. E., Tian, Q., Tibpromma, S., Wanasinghe, D. N., Wang, Y., Xu, j. C., Yacharoen, S., yan, J. Y. & Zhang M. (2013) Families of Dothideomycetes. Fungal Diversity 63: 1-313. http://dx. doi. org/10. 1007/s13225-013-0263-4.
24. Ju, Y. M., Rogers, J. D. & Huhndorf, S. M. (1996) Valsaria and notes on Endoxylina, Pseudothyridaria, Pseudovalsaria, and Roussoella. Mycotaxon 58: 419-481.
25. Kirk, P. M., Ainsworth, G. C., Cannon, P. F & Minter, D. W. (2008) Ainsworth and Bisby's Dictionary of the Fungi. 10th edition. CABI, UK, 771 pp.
26. Liu, J. K., Phookamsak, R., Jones, E. B. G., Zhang, Y., Ko-Ko, T. W., Hu, H. L., Boonmee, S., Doilom, M., Chukeatirote, E., Bahkali, A. H., Wang, Y. & Hyde, K. D. (2011). Astrosphaeriella is polyphyletic, with species in Fissuroma gen. nov., and Neoastrosphaeriella gen. nov. Fungal Diversity 51: 135-154. http://dx. doi. org/10. 1007/s13225-011-0142-9.
27. Liu, J. K., Chomnunti, P., Cai, L., Phookamsak, R., Chukeatirote, E., Jones, E. B. G., Moslem, M. & Hyde, K. D. (2010) Phylogeny and morphology of Neodeightonia palmicola sp. nov. from palms. Sydowia 62: 261-276.
28. Liu J. K., Phookamsak R., Doilom M., Wikee S., Li Y. M., Ariyawansha H., Boonmee S., Chomnunti P., Dai D. Q., Bhat J. D., Romero A. I., Zhuang, W. Y., Monkai, J., Jones, E. B. G., Chukeatirote, E., Ko-Ko, T. W., Zhao, Y. C., Wang, Y. & Hyde, K. D. (2012) Towards a natural classification of Botryosphaeriales. Fungal Diversity 57: 149-210. http://dx. doi. org/10. 1007/s13225-012-0207-4.
29. Liu, Y. J., Whelen, S. & Hall, B. D. (1999) Phylogenetic relationships among ascomycetes: evidence from an RNA polymerse II subunit. Molecular Biology and Evolution 16: 1799-1808. http://dx. doi. org/10. 1093/oxfordjournals. molbev. a026092.
30. Lumbsch, H. T. & Huhndorf, S. M. (2009) Outline of Ascomycota-2009. Myconet 14: 1-64. http://dx. doi. org/10. 3158/1557. 1.
31. Manamgoda, D. S, Cai, L., Bahkali, A. H., Chukeatirote, E. & Hyde, KD. (2011) Cochliobolus: an overview and current status of species. Fungal Diversity 51: 3-42. http://dx. doi. org/10. 1007/s13225-011-0139-4.
32. Miller, M. A., Pfeiffer, W. & Schwartz, T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: Gateway Computing Environments Workshop 2010 (GCE), 2010. IEEE, pp. 1-8. http://dx. doi. org/10. 1109/gce. 2010. 5676129.
33. Müller, E. & Arx, J. A. von (1962) Die Gattungen der didymosporen Pyrenomyceten. Mycologia 55: 251-253. http://dx. doi. org/10. 2307/3756296.
34. Nylander, J. A. A. (2004) MrModeltest 2. 0. Program distributed by the author. Evolutionary Biology Centre, Uppsala University.
35. Page, R. D. M. (1996) TreeView: an application to display phylogenetic trees on personal computers. Computer applications in the biosciences 12: 357-358.
36. Phookamsak, R., Liu J. K., Manamgoda, D. S., Wanasinghe, D. N., Mortimer, P. E. & Hyde, K. D. (2014) Epitypification of two bambusicolous fungi from Thailand. Phytotaxa (in press).
37. Rannala, B. & Yang, Z. (1996) Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. Journal of Molecular Evolution 43: 304-311.
38. Rehner, S. (2001) Primers for Elongation Factor 1-alpha (EF1-alpha). Insect Biocontrol Laboratory: USDA, ARS, PSI rehner@ ba ars usda gov.
39. Saccardo, P. A. & Paoletti, G. (1888) Mycetes Malacenses. Funghi della penisola di Malacca raccolti nel 1885 dell. Ab Benedetto Scortechini 6: 387-428.
40. Schoch, C. L., Crous, P. W., Groenewald, J. Z., Boehm, E. W. A., Burgess, T. I., de Gruyter, J., de Hoog, G. S., Dixon, L. J., Grube, M., Gueidan, C., Harada, Y., Hatakeyama, S., Hirayama, K., Hosoya, T., Huhndorf, S. M., Hyde, K. D., Jones, E. B. G., Kohlmeyer, J., Kruys, A., Li, Y. M., Lucking, R., Lumbsch, H. T., Marvanova, L., Mbatchou, J. S., McVay, A. H., Miller, A. N., Mugambi, G. K., Muggia, L., Nelsen, M. P., Nelson, P., Owensby, C. A., Phillips, A. J., Phongpaichit, S., Pointing, S. B., Pujade-Renaud, V., Raja, H. A., Plata, E. R., Robbertse, B., Ruibal, C., Sakayaroj, J., Sano, T., Selbmann, L., Shearer, C. A., Shirouzu, T., Slippers, B., Suetrong, S., Tanaka, K., Volkmann-Kohlmeyer, B., Wingfield, M. J., Wood, A. R., Woudenberg, J. H., Yonezawa, H., Zhang, Y. & Spatafora, J. W. (2009a) A class-wide phylogenetic assessment of Dothideomycetes. Studies in Mycology 64: 1-15. http://dx. doi. org/10. 3114/sim. 2009. 64. 01.
41. Schoch, C. L., Sung, G. H., López-Giráldez, F., Townsend, J. P., Miadlikowska, J., Hofstetter, V., Robbertse, B., Mathen, P. B., Kauff, F., Wang, Z., Gueidan, C. C., Andrie, R. M., Trippe, K., Ciufetti, L. M., Wynns, A., Fraker, E., Hodkinson, B. P., Bonito, G., Groenewald, J. Z., Arzanlou, M., De-Hoog, G. S., Crous, P. W., Hewitt, D., Pfister, D. H., Peterson, K., Gryzenhout, M., Wingfield, M. J., Aptroot, A., Suh, S. O., Blackwell, M., Hillis, D. M., Griffith, G. W., Castlebury, L. A., Rossman, A. Y., Lumbsch, H. T., Lücking, R., Büdel, B., Rauhut, A., Diederich, P., Ertz, D., Geiser, D. M., Hosaka, K., Inderbitzin, P., Kohlmeyer, J., Volkmann-Kohlmeyer, B., Mostert, L., O'Donnell, K., Sipman, H., Rogers, J., Shoemaker, R. A., Sugiyama, J., Summerbell, R. C., Untereiner, W., Johnston, P. R., Stenroos, S., Zuccaro, A., Dyer, P. S., Crittenden, P. D., Cole, M. S., Hansen, K., Trappe, J. M., Yahr, R., Lutzoni, F. O. & Spatafora, J. W. (2009b) The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits. Systematic Biology 58: 224-239. http://dx. doi. org/10. 1093/sysbio/syp020.
42. Stamatakis, A. (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22 (21): 2688-2690. http://dx. doi. org/10. 1093/bioinformatics/btl446.
43. Sutton, B. C. (1980) The Coelomycetes. Commonwealth Mycological Institute. Kew, UK, 696 pp.
44. Swofford, D. L. (2002) PAUP: phylogenetic analysis using parsimony, version 4. 0 b10. Sunderland, MA: Sinauer Associates.
45. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011) MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Molecular Biology and Evolution 28: 2731-2739. http://dx. doi. org/10. 1093/molbev/msr121.
46. Tanaka, K., Hirayama, K., Yonezawa, H., Hatakeyama, S., Harada, Y., Sano, T., Shirouzu, T. & Hosoya, T. (2009) Molecular taxonomy of bambusicolous fungi: Tetraplosphaeriaceae, a new pleosporalean family with Tetraploa-like anamorphs. Studies in Mycology 64: 175-209. http://dx. doi. org/10. 3114/sim. 2009. 64. 10.
47. Taylor, J. E. & Hyde, K. D. (2003) Microfungi of tropical and temperate palms. vol 12. Fungal Diversity Press.
48. Thiessen, F. & Sydow, H. (1915) Die Dothideales. Kritisch-systematische Originaluntersuchungen. In: Annales mycologici 147-746.
49. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997) The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25: 4876-4882. http://dx. doi. org/10. 1093/nar/25. 24. 4876.
50. Vilgalys, R. & Hester, M. (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172: 4238-4246.
51. White, T., Bruns, T., Lee, S. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M., Gelfand, D., Shinsky, J. & White, T. (Eds.) PCR protocols: a guide to methods and applications. Academic Press, New York, pp. 315-322.
52. Woudenberg, J. H., Groenewald, J. Z., Binder, M. & Crous, P. W. (2013) Alternaria redefined. Studies in Mycology 75: 171-212. http://dx. doi. org/10. 3114/sim0015.
53. Zhang, Y., Crous, P. W., Schoch, C. L. & Hyde, K. D. (2012) Pleosporales. Fungal Diversity 53: 1-221. http://dx. doi. org/10. 1007/s13225-011-0117-x.
54. Zhang, Y., Fournier, J., Phookamsak, R., Bahkali, A. & Hyde, K. D. (2013) Halotthiaceae fam. nov. (Pleosporales) accommodates the new genus Phaeoseptum and several other aquatic genera. Mycologia 105: 603-609. http://dx. doi. org/10. 3852/11-286.
55. Zhang, Y., Fournier, J., Pointing, S. B. & Hyde, K. D. (2008) Are Melanomma pulvis-pyrius and Trematosphaeria pertusa congeneric. Fungal Diversity 33: 47-60.
56. Zhang, Y., Schoch, C. L., Fournier, J., Crous, P. W., De Gruyter, J., Woudenberg, J., Hirayama, K., Tanaka, K., Pointing, S. & Spatafora, J. (2009a) Multi-locus phylogeny of Pleosporales: a taxonomic, ecological and evolutionary re-evaluation. Studies in Mycology 64: 85-102. http://dx. doi. org/10. 3114/sim. 2009. 64. 04.
57. Zhang, Y., Wang, H. K., Fournier, J., Crous, P. W., Jeewon, R., Pointing, S. B. & Hyde, K. D. (2009b) Towards a phylogenetic clarification of Lophiostoma/Massarina and morphologically similar genera in the Pleosporales. Fungal Diversity 38: 225-251.
58. Zhaxybayeva, O. & Gogarten, J. P. (2002) Bootstrap, Bayesian probability and maximum likelihood mapping: exploring new tools for comparative genome analyses. BMC Genomics 3: 4.
59. Zhou, D. Q., Cai, L. & Hyde, K. D. (2003) Astrosphaeriella and Roussoella species on bamboo from Hong Kong and Yunnan, China, including a new species of Roussoella. Cryptogamie Mycologie 24: 191-197.