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Volumn 110, Issue , 2014, Pages 280-287

Computational models to predict endocrine-disrupting chemical binding with androgen or oestrogen receptors

Author keywords

Androgen receptor; Endocrine disrupting chemicals; Machine learning; Oestrogen receptors; Substructure alert

Indexed keywords

ALKYL CHLORIDE; AMINE; ANDROGEN RECEPTOR; ANNELATED RING; ARYL CHLORIDE; ENDOCRINE DISRUPTOR; ESTROGEN RECEPTOR; KETONE; NITRO DERIVATIVE; PHENOL DERIVATIVE; TRIFLUOROMETHYL; UNCLASSIFIED DRUG; PROTEIN BINDING;

EID: 84907500336     PISSN: 01476513     EISSN: 10902414     Source Type: Journal    
DOI: 10.1016/j.ecoenv.2014.08.026     Document Type: Article
Times cited : (53)

References (35)
  • 1
    • 0035906457 scopus 로고    scopus 로고
    • Hydrogen bond structural group constants
    • Abraham M.H., Platts J.A. Hydrogen bond structural group constants. J. Org. Chem. 2001, 66:3484-3491.
    • (2001) J. Org. Chem. , vol.66 , pp. 3484-3491
    • Abraham, M.H.1    Platts, J.A.2
  • 2
    • 0242509805 scopus 로고    scopus 로고
    • Structure-activity relationships for the mutagenicity and carcinogenicity of simple and α-β unsaturated aldehydes
    • Benigni R., Passerini L., Rodomonte A. Structure-activity relationships for the mutagenicity and carcinogenicity of simple and α-β unsaturated aldehydes. Environ. Mol. Mutagen. 2003, 42:136-143.
    • (2003) Environ. Mol. Mutagen. , vol.42 , pp. 136-143
    • Benigni, R.1    Passerini, L.2    Rodomonte, A.3
  • 3
    • 27144489164 scopus 로고    scopus 로고
    • A tutorial on support vector machines for pattern recognition
    • Burges C.J. A tutorial on support vector machines for pattern recognition. Data Min. Knowl. Discov. 1998, 2:121-167.
    • (1998) Data Min. Knowl. Discov. , vol.2 , pp. 121-167
    • Burges, C.J.1
  • 6
    • 0028832564 scopus 로고
    • Environmental estrogens: health implications for humans and wildlife
    • Colborn T. Environmental estrogens: health implications for humans and wildlife. Environ. Health Perspect. 1995, 103:135.
    • (1995) Environ. Health Perspect. , vol.103 , pp. 135
    • Colborn, T.1
  • 7
    • 34249753618 scopus 로고
    • Support-vector networks
    • Cortes C., Vapnik V. Support-vector networks. Mach. Learn. 1995, 20:273-297.
    • (1995) Mach. Learn. , vol.20 , pp. 273-297
    • Cortes, C.1    Vapnik, V.2
  • 10
    • 84907520285 scopus 로고    scopus 로고
    • QSAR Model for Androgen Receptor Antagonism-Data from CHO Cell Reporter Gene Assays
    • Gunde Egeskov J. QSAR Model for Androgen Receptor Antagonism-Data from CHO Cell Reporter Gene Assays. J. Steroids Horm. Sci. 2012.
    • (2012) J. Steroids Horm. Sci.
    • Gunde Egeskov, J.1
  • 11
    • 84857362154 scopus 로고    scopus 로고
    • Recent developments in antiandrogens and selective androgen receptor modulators
    • Haendler B., Cleve A. Recent developments in antiandrogens and selective androgen receptor modulators. Mol. Cell Endocrinol. 2012, 352:79-91.
    • (2012) Mol. Cell Endocrinol. , vol.352 , pp. 79-91
    • Haendler, B.1    Cleve, A.2
  • 12
    • 0029404240 scopus 로고
    • Electrotopological state indices for atom types: a novel combination of electronic, topological, and valence state information
    • Hall L.H., Kier L.B. Electrotopological state indices for atom types: a novel combination of electronic, topological, and valence state information. J. Chem. Inf. Comput. Sci. 1995, 35:1039-1045.
    • (1995) J. Chem. Inf. Comput. Sci. , vol.35 , pp. 1039-1045
    • Hall, L.H.1    Kier, L.B.2
  • 15
    • 0035498337 scopus 로고    scopus 로고
    • QSAR and k-nearest neighbor classification analysis of selective cyclooxygenase-2 inhibitors using topologically-based numerical descriptors
    • Kauffman G.W., Jurs P.C. QSAR and k-nearest neighbor classification analysis of selective cyclooxygenase-2 inhibitors using topologically-based numerical descriptors. J. Chem. Inf. Comput. Sci. 2001, 41:1553-1560.
    • (2001) J. Chem. Inf. Comput. Sci. , vol.41 , pp. 1553-1560
    • Kauffman, G.W.1    Jurs, P.C.2
  • 16
    • 54949134905 scopus 로고    scopus 로고
    • Chemical substructures that enrich for biological activity
    • Klekota J., Roth F.P. Chemical substructures that enrich for biological activity. Bioinformatics 2008, 24:2518-2525.
    • (2008) Bioinformatics , vol.24 , pp. 2518-2525
    • Klekota, J.1    Roth, F.P.2
  • 17
    • 84907520284 scopus 로고    scopus 로고
    • KNIME, version 2.7.4
    • KNIME, version 2.7.4. http://www.knime.org/.
  • 18
    • 33846820291 scopus 로고    scopus 로고
    • Progress in QSAR toxicity screening of pharmaceutical impurities and other FDA regulated products
    • Kruhlak N.L., Contrera J.F., Benz R.D., Matthews E.J. Progress in QSAR toxicity screening of pharmaceutical impurities and other FDA regulated products. Adv. Drug Deliv. Rev. 2007, 59:43-55.
    • (2007) Adv. Drug Deliv. Rev. , vol.59 , pp. 43-55
    • Kruhlak, N.L.1    Contrera, J.F.2    Benz, R.D.3    Matthews, E.J.4
  • 19
    • 77952756796 scopus 로고    scopus 로고
    • Classification and virtual screening of androgen receptor antagonists
    • Li J., Gramatica P. Classification and virtual screening of androgen receptor antagonists. J. Chem. Inf. Model. 2010, 50:861-874.
    • (2010) J. Chem. Inf. Model. , vol.50 , pp. 861-874
    • Li, J.1    Gramatica, P.2
  • 20
    • 78649790472 scopus 로고    scopus 로고
    • QSAR classification of estrogen receptor binders and pre-screening of potential pleiotropic EDCs
    • Li J., Gramatica P. QSAR classification of estrogen receptor binders and pre-screening of potential pleiotropic EDCs. SAR QSAR Environ. Res. 2010, 21:657-669.
    • (2010) SAR QSAR Environ. Res. , vol.21 , pp. 657-669
    • Li, J.1    Gramatica, P.2
  • 21
    • 34250824089 scopus 로고    scopus 로고
    • In silico screening of estrogen-like chemicals based on different nonlinear classification models
    • Liu H., Papa E., Walker J.D., Gramatica P. In silico screening of estrogen-like chemicals based on different nonlinear classification models. J. Mol. Graph. Model. 2007, 26:135-144.
    • (2007) J. Mol. Graph. Model. , vol.26 , pp. 135-144
    • Liu, H.1    Papa, E.2    Walker, J.D.3    Gramatica, P.4
  • 22
    • 40249111659 scopus 로고    scopus 로고
    • Decision trees versus support vector machine for classification of androgen receptor ligands 1
    • Panaye A., Doucet J., Devillers J., Marchand-Geneste N., Porcher J. Decision trees versus support vector machine for classification of androgen receptor ligands 1. SAR QSAR Environ. Res. 2008, 19:129-151.
    • (2008) SAR QSAR Environ. Res. , vol.19 , pp. 129-151
    • Panaye, A.1    Doucet, J.2    Devillers, J.3    Marchand-Geneste, N.4    Porcher, J.5
  • 23
    • 33745420796 scopus 로고    scopus 로고
    • Assessing different classification methods for virtual screening
    • Plewczynski D., Spieser S.A., Koch U. Assessing different classification methods for virtual screening. J. Chem. Inf. Model. 2006, 46:1098-1106.
    • (2006) J. Chem. Inf. Model. , vol.46 , pp. 1098-1106
    • Plewczynski, D.1    Spieser, S.A.2    Koch, U.3
  • 25
    • 79960980803 scopus 로고    scopus 로고
    • Bisphenol A: an endocrine disruptor with widespread exposure and multiple effects
    • Rubin B.S. Bisphenol A: an endocrine disruptor with widespread exposure and multiple effects. J. Steroid Biochem. Mol. Biol. 2011, 127:27-34.
    • (2011) J. Steroid Biochem. Mol. Biol. , vol.127 , pp. 27-34
    • Rubin, B.S.1
  • 26
    • 77954068708 scopus 로고    scopus 로고
    • Estimation of ADME properties with substructure pattern recognition
    • Shen J., Cheng F., Xu Y., Li W., Tang Y. Estimation of ADME properties with substructure pattern recognition. J. Chem. Inf. Model. 2010, 50:1034-1041.
    • (2010) J. Chem. Inf. Model. , vol.50 , pp. 1034-1041
    • Shen, J.1    Cheng, F.2    Xu, Y.3    Li, W.4    Tang, Y.5
  • 28
    • 0034121290 scopus 로고    scopus 로고
    • Androgen receptor antagonists (antiandrogens) structure-activity relationships
    • Singh S.M., Gauthier S., Labrie F. Androgen receptor antagonists (antiandrogens) structure-activity relationships. Curr. Med. Chem. 2000, 7:211-247.
    • (2000) Curr. Med. Chem. , vol.7 , pp. 211-247
    • Singh, S.M.1    Gauthier, S.2    Labrie, F.3
  • 29
    • 78649522324 scopus 로고    scopus 로고
    • Prediction of toxicity and data exploratory analysis of estrogen-active endocrine disruptors using counter-propagation artificial neural networks
    • Stojić N., Erić S., Kuzmanovski I. Prediction of toxicity and data exploratory analysis of estrogen-active endocrine disruptors using counter-propagation artificial neural networks. J. Mol. Graph. Model. 2010, 29:450-460.
    • (2010) J. Mol. Graph. Model. , vol.29 , pp. 450-460
    • Stojić, N.1    Erić, S.2    Kuzmanovski, I.3
  • 30
    • 23044442687 scopus 로고    scopus 로고
    • In vivo and in vitro anti-androgenic effects of DE-71, a commercial polybrominated diphenyl ether (PBDE) mixture
    • Stoker T., Cooper R., Lambright C., Wilson V., Furr J., Gray L. In vivo and in vitro anti-androgenic effects of DE-71, a commercial polybrominated diphenyl ether (PBDE) mixture. Toxicol. Appl. Pharm. 2005, 207:78-88.
    • (2005) Toxicol. Appl. Pharm. , vol.207 , pp. 78-88
    • Stoker, T.1    Cooper, R.2    Lambright, C.3    Wilson, V.4    Furr, J.5    Gray, L.6
  • 31
    • 33748763282 scopus 로고    scopus 로고
    • Structural basis for androgen receptor agonists and antagonists: interaction of SPEED 98-listed chemicals and related compounds with the androgen receptor based on an in vitro reporter gene assay and 3D-QSAR
    • Tamura H., Ishimoto Y., Fujikawa T., Aoyama H., Yoshikawa H., Akamatsu M. Structural basis for androgen receptor agonists and antagonists: interaction of SPEED 98-listed chemicals and related compounds with the androgen receptor based on an in vitro reporter gene assay and 3D-QSAR. Bioor. Med. Chem. 2006, 14:7160-7174.
    • (2006) Bioor. Med. Chem. , vol.14 , pp. 7160-7174
    • Tamura, H.1    Ishimoto, Y.2    Fujikawa, T.3    Aoyama, H.4    Yoshikawa, H.5    Akamatsu, M.6
  • 33
    • 43149089371 scopus 로고    scopus 로고
    • Screening of 397 chemicals and development of a quantitative structure-activity relationship model for androgen receptor antagonism
    • Vinggaard A.M., Niemelä J., Wedebye E.B., Jensen G.E. Screening of 397 chemicals and development of a quantitative structure-activity relationship model for androgen receptor antagonism. Chem. Res. Toxicol. 2008, 21:813-823.
    • (2008) Chem. Res. Toxicol. , vol.21 , pp. 813-823
    • Vinggaard, A.M.1    Niemelä, J.2    Wedebye, E.B.3    Jensen, G.E.4
  • 34
    • 39449088858 scopus 로고    scopus 로고
    • Naive Bayes classification using 2D pharmacophore feature triplet vectors
    • Watson P. Naive Bayes classification using 2D pharmacophore feature triplet vectors. J. Chem. Inf. Model. 2008, 48:166-178.
    • (2008) J. Chem. Inf. Model. , vol.48 , pp. 166-178
    • Watson, P.1
  • 35
    • 79953005609 scopus 로고    scopus 로고
    • PaDEL-descriptor: an open source software to calculate molecular descriptors and fingerprints
    • Yap C.W. PaDEL-descriptor: an open source software to calculate molecular descriptors and fingerprints. J. Comput. Chem. 2011, 32:1466-1474.
    • (2011) J. Comput. Chem. , vol.32 , pp. 1466-1474
    • Yap, C.W.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.