-
1
-
-
0035967915
-
A review of structure-based biodegradation estimation methods
-
Raymond, J. W.; Rogers, T. N.; Shonnard, D. R.; Kline, A. A. A review of structure-based biodegradation estimation methods J. Hazard. Mater. 2001, 84, 189-215
-
(2001)
J. Hazard. Mater.
, vol.84
, pp. 189-215
-
-
Raymond, J.W.1
Rogers, T.N.2
Shonnard, D.R.3
Kline, A.A.4
-
2
-
-
77950415995
-
Identifying new persistent and bioaccumulative organics among chemicals in commerce
-
Howard, P. H.; Muir, D. C. Identifying new persistent and bioaccumulative organics among chemicals in commerce Environ. Sci. Technol. 2010, 44, 2277-2285
-
(2010)
Environ. Sci. Technol.
, vol.44
, pp. 2277-2285
-
-
Howard, P.H.1
Muir, D.C.2
-
3
-
-
80051748642
-
Identifying new persistent and bioaccumulative organics among chemicals in commerce II: Pharmaceuticals
-
Howard, P. H.; Muir, D. C. Identifying new persistent and bioaccumulative organics among chemicals in commerce II: pharmaceuticals Environ. Sci. Technol. 2011, 45, 6938-6946
-
(2011)
Environ. Sci. Technol.
, vol.45
, pp. 6938-6946
-
-
Howard, P.H.1
Muir, D.C.2
-
4
-
-
0033103838
-
Evaluation and application of models for the prediction of ready biodegradability in the MITI-I test
-
Rorije, E.; Loonen, H.; Muller, M.; Klopman, G.; Peijnenburg, W. J. Evaluation and application of models for the prediction of ready biodegradability in the MITI-I test Chemosphere. 1999, 38, 1409-1417
-
(1999)
Chemosphere.
, vol.38
, pp. 1409-1417
-
-
Rorije, E.1
Loonen, H.2
Muller, M.3
Klopman, G.4
Peijnenburg, W.J.5
-
5
-
-
77956066358
-
Computational toxicology: Realizing the promise of the toxicity testing in the 21st century
-
Rusyn, I.; Daston, G. P. Computational toxicology: realizing the promise of the toxicity testing in the 21st century Environ. Health. Perspect. 2010, 118, 1047-1050
-
(2010)
Environ. Health. Perspect.
, vol.118
, pp. 1047-1050
-
-
Rusyn, I.1
Daston, G.P.2
-
6
-
-
0036708522
-
The maximum common substructure as a molecular depiction in a supervised classification context: Experiments in quantitative structure/biodegradability relationships
-
Cuissart, B.; Touffet, F.; Cremilleux, B.; Bureau, R.; Rault, S. The maximum common substructure as a molecular depiction in a supervised classification context: experiments in quantitative structure/biodegradability relationships J. Chem. Inf. Comput. Sci. 2002, 42, 1043-1052
-
(2002)
J. Chem. Inf. Comput. Sci.
, vol.42
, pp. 1043-1052
-
-
Cuissart, B.1
Touffet, F.2
Cremilleux, B.3
Bureau, R.4
Rault, S.5
-
7
-
-
79953188035
-
A simple protocol for the comparative analysis of the structure and occurrence of biochemical pathways across superkingdoms
-
Andreini, C.; Bertini, I.; Cavallaro, G.; Decaria, L.; Rosato, A. A simple protocol for the comparative analysis of the structure and occurrence of biochemical pathways across superkingdoms J. Chem. Inf. Model. 2010, 51, 730-738
-
(2010)
J. Chem. Inf. Model.
, vol.51
, pp. 730-738
-
-
Andreini, C.1
Bertini, I.2
Cavallaro, G.3
Decaria, L.4
Rosato, A.5
-
8
-
-
0026769273
-
Predictive model for aerobic biodegradability developed from a file of evaluated biodegradation data
-
Howard, P. H.; Boethling, R. S.; Stiteler, W. M.; Meylan, W. M.; Hueber, A. E.; Beauman, J. A.; Larosche, M. E. Predictive model for aerobic biodegradability developed from a file of evaluated biodegradation data Environ. Toxicol. Chem. 1992, 11, 593-603
-
(1992)
Environ. Toxicol. Chem.
, vol.11
, pp. 593-603
-
-
Howard, P.H.1
Boethling, R.S.2
Stiteler, W.M.3
Meylan, W.M.4
Hueber, A.E.5
Beauman, J.A.6
Larosche, M.E.7
-
9
-
-
0033797060
-
Predicting Ready Biodegradability in the Japanese Ministry of International Trade and Industry Test
-
Tunkel, J.; Howard, P. H.; Boethling, R. S.; Stiteler, W.; Loonen, H. Predicting Ready Biodegradability in the Japanese Ministry of International Trade and Industry Test Environ. Toxicol. Chem. 2000, 19, 2478-2485
-
(2000)
Environ. Toxicol. Chem.
, vol.19
, pp. 2478-2485
-
-
Tunkel, J.1
Howard, P.H.2
Boethling, R.S.3
Stiteler, W.4
Loonen, H.5
-
10
-
-
0033872735
-
Prediction for biodegradability of chemicals by an empirical flowchart
-
Hiromatsu, K.; Yakabe, Y.; Katagiri, K.; Nishihara, T. Prediction for biodegradability of chemicals by an empirical flowchart Chemosphere. 2000, 41, 1749-1754
-
(2000)
Chemosphere.
, vol.41
, pp. 1749-1754
-
-
Hiromatsu, K.1
Yakabe, Y.2
Katagiri, K.3
Nishihara, T.4
-
11
-
-
33847196497
-
Biochemical interpretation of quantitative structure-activity relationships (QSAR) for biodegradation of N-heterocycles: A complementary approach to predict biodegradability
-
Philipp, B.; Hoff, M.; Germa, F.; Schink, B.; Beimborn, D.; Mersch-Sundermann, V. Biochemical interpretation of quantitative structure-activity relationships (QSAR) for biodegradation of N-heterocycles: a complementary approach to predict biodegradability Environ. Sci. Technol. 2007, 41, 1390-1398
-
(2007)
Environ. Sci. Technol.
, vol.41
, pp. 1390-1398
-
-
Philipp, B.1
Hoff, M.2
Germa, F.3
Schink, B.4
Beimborn, D.5
Mersch-Sundermann, V.6
-
12
-
-
0037498035
-
Microbial pathway prediction: A functional group approach
-
Hou, B. K.; Wackett, L. P.; Ellis, L. B. Microbial pathway prediction: a functional group approach J. Chem. Inf. Comput. Sci. 2003, 43, 1051-1057
-
(2003)
J. Chem. Inf. Comput. Sci.
, vol.43
, pp. 1051-1057
-
-
Hou, B.K.1
Wackett, L.P.2
Ellis, L.B.3
-
13
-
-
2942737435
-
Induction of decision trees via evolutionary programming
-
DeLisle, R. K.; Dixon, S. L. Induction of decision trees via evolutionary programming J. Chem. Inf. Comput. Sci. 2004, 44, 862-870
-
(2004)
J. Chem. Inf. Comput. Sci.
, vol.44
, pp. 862-870
-
-
Delisle, R.K.1
Dixon, S.L.2
-
14
-
-
0142089684
-
Recent developments in broadly applicable structure-biodegradability relationships
-
Jaworska, J. S.; Boethling, R. S.; Howard, P. H. Recent developments in broadly applicable structure-biodegradability relationships Environ. Toxicol. Chem. 2003, 22, 1710-1723
-
(2003)
Environ. Toxicol. Chem.
, vol.22
, pp. 1710-1723
-
-
Jaworska, J.S.1
Boethling, R.S.2
Howard, P.H.3
-
15
-
-
0037366605
-
The combinatorial synthesis of bicyclic privileged structures or privileged substructures
-
Horton, D. A.; Bourne, G. T.; Smythe, M. L. The combinatorial synthesis of bicyclic privileged structures or privileged substructures Chem. Rev. 2003, 103, 893-930
-
(2003)
Chem. Rev.
, vol.103
, pp. 893-930
-
-
Horton, D.A.1
Bourne, G.T.2
Smythe, M.L.3
-
16
-
-
0007357272
-
Guideline for Testing of Chemicals
-
OECD 301. OECD: Paris.
-
OECD 301. Guideline for Testing of Chemicals. Ready Biodegradability. OECD: Paris, 1992.
-
(1992)
Ready Biodegradability
-
-
-
17
-
-
75349111301
-
Evaluation of the OECD 314B activated sludge die-away test for assessing the biodegradation of pharmaceuticals
-
Ericson, J. F. Evaluation of the OECD 314B activated sludge die-away test for assessing the biodegradation of pharmaceuticals Environ. Sci. Technol. 2010, 44, 375-381
-
(2010)
Environ. Sci. Technol.
, vol.44
, pp. 375-381
-
-
Ericson, J.F.1
-
18
-
-
55649116409
-
ACToR - Aggregated Computational Toxicology Resource
-
Judson, R.; Richard, A.; Dix, D.; Houck, K.; Elloumi, F.; Martin, M.; Cathey, T.; Transue, T. R.; Spencer, R.; Wolf, M. ACToR - Aggregated Computational Toxicology Resource Toxicol. Appl. Pharmacol. 2008, 233, 7-13
-
(2008)
Toxicol. Appl. Pharmacol.
, vol.233
, pp. 7-13
-
-
Judson, R.1
Richard, A.2
Dix, D.3
Houck, K.4
Elloumi, F.5
Martin, M.6
Cathey, T.7
Transue, T.R.8
Spencer, R.9
Wolf, M.10
-
19
-
-
67849104638
-
PubChem: A public information system for analyzing bioactivities of small molecules
-
Wang, Y.; Xiao, J.; Suzek, T. O.; Zhang, J.; Wang, J.; Bryant, S. H. PubChem: a public information system for analyzing bioactivities of small molecules Nucleic Acids Res. 2009, 37, W623-633
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 623-633
-
-
Wang, Y.1
Xiao, J.2
Suzek, T.O.3
Zhang, J.4
Wang, J.5
Bryant, S.H.6
-
20
-
-
1842563890
-
Using Biowin, Bayes, and batteries to predict ready biodegradability
-
Boethling, R. S.; Lynch, D. G.; Jaworska, J. S.; Tunkel, J. L.; Thom, G. C.; Webb, S. Using Biowin, Bayes, and batteries to predict ready biodegradability Environ. Toxicol. Chem. 2004, 23, 911-920
-
(2004)
Environ. Toxicol. Chem.
, vol.23
, pp. 911-920
-
-
Boethling, R.S.1
Lynch, D.G.2
Jaworska, J.S.3
Tunkel, J.L.4
Thom, G.C.5
Webb, S.6
-
21
-
-
79953005609
-
PaDEL-descriptor: An open source software to calculate molecular descriptors and fingerprints
-
Yap, C. W. PaDEL-descriptor: An open source software to calculate molecular descriptors and fingerprints J. Comput. Chem. 2011, 32, 1466-1474
-
(2011)
J. Comput. Chem.
, vol.32
, pp. 1466-1474
-
-
Yap, C.W.1
-
24
-
-
79960245348
-
Classification of Cytochrome P450 Inhibitors and non-Inhibitors using Combined Classifiers
-
Cheng, F.; Yu, Y.; Shen, J.; Yang, L.; Li, W.; Liu, G.; Lee, P. W.; Tang, Y. Classification of Cytochrome P450 Inhibitors and non-Inhibitors using Combined Classifiers J. Chem. Inf. Model. 2011, 51, 996-1011
-
(2011)
J. Chem. Inf. Model.
, vol.51
, pp. 996-1011
-
-
Cheng, F.1
Yu, Y.2
Shen, J.3
Yang, L.4
Li, W.5
Liu, G.6
Lee, P.W.7
Tang, Y.8
-
25
-
-
85192675514
-
In silico prediction of blood-brain partitioning using a chemometric method called genetic algorithm based variable selection
-
Shen, J.; Du, Y.; Zhao, Y.; Liu, G.; Tang, Y. In silico prediction of blood-brain partitioning using a chemometric method called genetic algorithm based variable selection QSAR Comb. Sci. 2008, 72, 635-645
-
(2008)
QSAR Comb. Sci.
, vol.72
, pp. 635-645
-
-
Shen, J.1
Du, Y.2
Zhao, Y.3
Liu, G.4
Tang, Y.5
-
26
-
-
54949134905
-
Chemical substructures that enrich for biological activity
-
Klekota, J.; Roth, F. P. Chemical substructures that enrich for biological activity Bioinformatics. 2008, 24, 2518-2525
-
(2008)
Bioinformatics.
, vol.24
, pp. 2518-2525
-
-
Klekota, J.1
Roth, F.P.2
-
28
-
-
36949022890
-
Predictive QSAR modeling workflow, model applicability domains, and virtual screening
-
Tropsha, A.; Golbraikh, A. Predictive QSAR modeling workflow, model applicability domains, and virtual screening Curr. Pharm. Des. 2007, 13, 3494-3504
-
(2007)
Curr. Pharm. Des.
, vol.13
, pp. 3494-3504
-
-
Tropsha, A.1
Golbraikh, A.2
-
29
-
-
45749129400
-
Use of cell viability assay data improves the prediction accuracy of conventional quantitative structure-activity relationship models of animal carcinogenicity
-
Zhu, H.; Rusyn, I.; Richard, A.; Tropsha, A. Use of cell viability assay data improves the prediction accuracy of conventional quantitative structure-activity relationship models of animal carcinogenicity Environ. Health. Perspect. 2008, 116, 506-513
-
(2008)
Environ. Health. Perspect.
, vol.116
, pp. 506-513
-
-
Zhu, H.1
Rusyn, I.2
Richard, A.3
Tropsha, A.4
-
30
-
-
77951213013
-
Modeling liver-related adverse effects of drugs using knearest neighbor quantitative structure-activity relationship method
-
Rodgers, A. D.; Zhu, H.; Fourches, D.; Rusyn, I.; Tropsha, A. Modeling liver-related adverse effects of drugs using knearest neighbor quantitative structure-activity relationship method Chem. Res. Toxicol. 2010, 23, 724-732
-
(2010)
Chem. Res. Toxicol.
, vol.23
, pp. 724-732
-
-
Rodgers, A.D.1
Zhu, H.2
Fourches, D.3
Rusyn, I.4
Tropsha, A.5
-
31
-
-
34249753618
-
Support-Vector Networks
-
Corinna, C.; Vladimir, V. Support-Vector Networks Mach. Learn. 1995, 20, 273-297
-
(1995)
Mach. Learn.
, vol.20
, pp. 273-297
-
-
Corinna, C.1
Vladimir, V.2
-
33
-
-
84926662675
-
Nearest neighbor pattern classification
-
Cover, T. M.; Hart, P. E. Nearest neighbor pattern classification IEEE. T. Inform. Theory. 1967, 13, 21-27
-
(1967)
IEEE. T. Inform. Theory.
, vol.13
, pp. 21-27
-
-
Cover, T.M.1
Hart, P.E.2
-
34
-
-
39449088858
-
Naive Bayes classification using 2D pharmacophore feature triplet vectors
-
Watson, P. Naive Bayes classification using 2D pharmacophore feature triplet vectors J. Chem. Inf. Model. 2008, 48, 166-178
-
(2008)
J. Chem. Inf. Model.
, vol.48
, pp. 166-178
-
-
Watson, P.1
-
35
-
-
77954068708
-
Estimation of ADME properties with substructure pattern recognition
-
Shen, J.; Cheng, F.; Xu, Y.; Li, W.; Tang, Y. Estimation of ADME properties with substructure pattern recognition J. Chem. Inf. Model. 2010, 50, 1034-1041
-
(2010)
J. Chem. Inf. Model.
, vol.50
, pp. 1034-1041
-
-
Shen, J.1
Cheng, F.2
Xu, Y.3
Li, W.4
Tang, Y.5
-
36
-
-
0024239320
-
Methods for drug discovery: Development of potent, selective, orally effective cholecystokinin antagonists
-
Evans, B. E.; Rittle, K. E.; Bock, M. G.; DiPardo, R. M.; Freidinger, R. M.; Whitter, W. L.; Lundell, G. F.; Veber, D. F.; Anderson, P. S.; Chang, R. S. Methods for drug discovery: development of potent, selective, orally effective cholecystokinin antagonists J. Med. Chem. 1988, 31, 2235-2246
-
(1988)
J. Med. Chem.
, vol.31
, pp. 2235-2246
-
-
Evans, B.E.1
Rittle, K.E.2
Bock, M.G.3
Dipardo, R.M.4
Freidinger, R.M.5
Whitter, W.L.6
Lundell, G.F.7
Veber, D.F.8
Anderson, P.S.9
Chang, R.S.10
-
37
-
-
33846923287
-
In silico prediction of cytochrome P450 2D6 and 3A4 inhibition using Gaussian kernel weighted k-nearest neighbor and extended connectivity fingerprints, including structural fragment analysis of inhibitors versus noninhibitors
-
Jensen, B. F.; Vind, C.; Padkjaer, S. B.; Brockhoff, P. B.; Refsgaard, H. H. In silico prediction of cytochrome P450 2D6 and 3A4 inhibition using Gaussian kernel weighted k-nearest neighbor and extended connectivity fingerprints, including structural fragment analysis of inhibitors versus noninhibitors J. Med. Chem. 2007, 50, 501-511
-
(2007)
J. Med. Chem.
, vol.50
, pp. 501-511
-
-
Jensen, B.F.1
Vind, C.2
Padkjaer, S.B.3
Brockhoff, P.B.4
Refsgaard, H.H.5
-
38
-
-
0033931867
-
Assessing the accuracy of prediction algorithms for classification: An overview
-
Baldi, P.; Brunak, S.; Chauvin, Y.; Andersen, C. A.; Nielsen, H. Assessing the accuracy of prediction algorithms for classification: an overview Bioinformatics. 2000, 16, 412-424
-
(2000)
Bioinformatics.
, vol.16
, pp. 412-424
-
-
Baldi, P.1
Brunak, S.2
Chauvin, Y.3
Andersen, C.A.4
Nielsen, H.5
-
39
-
-
42749092988
-
The importance of the domain of applicability in QSAR modeling
-
Weaver, S.; Gleeson, M. P. The importance of the domain of applicability in QSAR modeling J. Mol. Graphics Modell. 2008, 26, 1315-1326
-
(2008)
J. Mol. Graphics Modell.
, vol.26
, pp. 1315-1326
-
-
Weaver, S.1
Gleeson, M.P.2
-
40
-
-
54249125512
-
Critical assessment of QSAR models of environmental toxicity against Tetrahymena pyriformis: Focusing on applicability domain and overfitting by variable selection
-
Tetko, I. V.; Sushko, I.; Pandey, A. K.; Zhu, H.; Tropsha, A.; Papa, E.; Oberg, T.; Todeschini, R.; Fourches, D.; Varnek, A. Critical assessment of QSAR models of environmental toxicity against Tetrahymena pyriformis: focusing on applicability domain and overfitting by variable selection J. Chem. Inf. Model. 2008, 48, 1733-1746
-
(2008)
J. Chem. Inf. Model.
, vol.48
, pp. 1733-1746
-
-
Tetko, I.V.1
Sushko, I.2
Pandey, A.K.3
Zhu, H.4
Tropsha, A.5
Papa, E.6
Oberg, T.7
Todeschini, R.8
Fourches, D.9
Varnek, A.10
-
41
-
-
78650714907
-
Applicability domains for classification problems: Benchmarking of distance to models for Ames mutagenicity set
-
Sushko, I.; Novotarskyi, S.; Korner, R.; Pandey, A. K.; Cherkasov, A.; Li, J.; Gramatica, P.; Hansen, K.; Schroeter, T.; Muller, K. R.; Xi, L.; Liu, H.; Yao, X.; Oberg, T.; Hormozdiari, F.; Dao, P.; Sahinalp, C.; Todeschini, R.; Polishchuk, P.; Artemenko, A.; Kuz'min, V.; Martin, T. M.; Young, D. M.; Fourches, D.; Muratov, E.; Tropsha, A.; Baskin, I.; Horvath, D.; Marcou, G.; Muller, C.; Varnek, A.; Prokopenko, V. V.; Tetko, I. V. Applicability domains for classification problems: Benchmarking of distance to models for Ames mutagenicity set J. Chem. Inf. Model. 2010, 50, 2094-2111
-
(2010)
J. Chem. Inf. Model.
, vol.50
, pp. 2094-2111
-
-
Sushko, I.1
Novotarskyi, S.2
Korner, R.3
Pandey, A.K.4
Cherkasov, A.5
Li, J.6
Gramatica, P.7
Hansen, K.8
Schroeter, T.9
Muller, K.R.10
Xi, L.11
Liu, H.12
Yao, X.13
Oberg, T.14
Hormozdiari, F.15
Dao, P.16
Sahinalp, C.17
Todeschini, R.18
Polishchuk, P.19
Artemenko, A.20
Kuz'Min, V.21
Martin, T.M.22
Young, D.M.23
Fourches, D.24
Muratov, E.25
Tropsha, A.26
Baskin, I.27
Horvath, D.28
Marcou, G.29
Muller, C.30
Varnek, A.31
Prokopenko, V.V.32
Tetko, I.V.33
more..
-
42
-
-
79951721392
-
In silico prediction of Tetrahymena pyriformis toxicity for diverse industrial chemicals with substructure pattern recognition and machine learning methods
-
Cheng, F.; Shen, J.; Yu, Y.; Li, W.; Liu, G.; Lee, P. W.; Tang, Y. In silico prediction of Tetrahymena pyriformis toxicity for diverse industrial chemicals with substructure pattern recognition and machine learning methods Chemosphere. 2011, 82, 1636-1643
-
(2011)
Chemosphere.
, vol.82
, pp. 1636-1643
-
-
Cheng, F.1
Shen, J.2
Yu, Y.3
Li, W.4
Liu, G.5
Lee, P.W.6
Tang, Y.7
-
43
-
-
80054965570
-
Insights into molecular basis of cytochrome p450 inhibitory promiscuity of compounds
-
Cheng, F.; Yu, Y.; Zhou, Y.; Shen, Z.; Xiao, W.; Liu, G.; Li, W.; Lee, P. W.; Tang, Y. Insights into molecular basis of cytochrome p450 inhibitory promiscuity of compounds J. Chem. Inf. Model. 2011, 51, 2482-2495
-
(2011)
J. Chem. Inf. Model.
, vol.51
, pp. 2482-2495
-
-
Cheng, F.1
Yu, Y.2
Zhou, Y.3
Shen, Z.4
Xiao, W.5
Liu, G.6
Li, W.7
Lee, P.W.8
Tang, Y.9
-
44
-
-
65049084207
-
Structure-biodegradability relationship of nonylphenol isomers during biological wastewater treatment process
-
Hao, R.; Li, J.; Zhou, Y.; Cheng, S.; Zhang, Y. Structure- biodegradability relationship of nonylphenol isomers during biological wastewater treatment process Chemosphere 2009, 75, 987-994
-
(2009)
Chemosphere
, vol.75
, pp. 987-994
-
-
Hao, R.1
Li, J.2
Zhou, Y.3
Cheng, S.4
Zhang, Y.5
-
45
-
-
38849181634
-
Review of Estimation Models for Biodegradation
-
Pavan, M.; Worth, A. P. Review of Estimation Models for Biodegradation QSAR Comb. Sci. 2008, 27, 32-40
-
(2008)
QSAR Comb. Sci.
, vol.27
, pp. 32-40
-
-
Pavan, M.1
Worth, A.P.2
|