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Volumn 52, Issue 3, 2012, Pages 655-669

In silico assessment of chemical biodegradability

Author keywords

[No Author keywords available]

Indexed keywords

BIODEGRADABILITY; BIODEGRADATION; BIOHAZARDS; CHEMICAL HAZARDS; DECISION TREES; INTERNATIONAL TRADE; NEAREST NEIGHBOR SEARCH; SUPPORT VECTOR MACHINES;

EID: 84859189951     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci200622d     Document Type: Article
Times cited : (91)

References (45)
  • 2
    • 77950415995 scopus 로고    scopus 로고
    • Identifying new persistent and bioaccumulative organics among chemicals in commerce
    • Howard, P. H.; Muir, D. C. Identifying new persistent and bioaccumulative organics among chemicals in commerce Environ. Sci. Technol. 2010, 44, 2277-2285
    • (2010) Environ. Sci. Technol. , vol.44 , pp. 2277-2285
    • Howard, P.H.1    Muir, D.C.2
  • 3
    • 80051748642 scopus 로고    scopus 로고
    • Identifying new persistent and bioaccumulative organics among chemicals in commerce II: Pharmaceuticals
    • Howard, P. H.; Muir, D. C. Identifying new persistent and bioaccumulative organics among chemicals in commerce II: pharmaceuticals Environ. Sci. Technol. 2011, 45, 6938-6946
    • (2011) Environ. Sci. Technol. , vol.45 , pp. 6938-6946
    • Howard, P.H.1    Muir, D.C.2
  • 4
    • 0033103838 scopus 로고    scopus 로고
    • Evaluation and application of models for the prediction of ready biodegradability in the MITI-I test
    • Rorije, E.; Loonen, H.; Muller, M.; Klopman, G.; Peijnenburg, W. J. Evaluation and application of models for the prediction of ready biodegradability in the MITI-I test Chemosphere. 1999, 38, 1409-1417
    • (1999) Chemosphere. , vol.38 , pp. 1409-1417
    • Rorije, E.1    Loonen, H.2    Muller, M.3    Klopman, G.4    Peijnenburg, W.J.5
  • 5
    • 77956066358 scopus 로고    scopus 로고
    • Computational toxicology: Realizing the promise of the toxicity testing in the 21st century
    • Rusyn, I.; Daston, G. P. Computational toxicology: realizing the promise of the toxicity testing in the 21st century Environ. Health. Perspect. 2010, 118, 1047-1050
    • (2010) Environ. Health. Perspect. , vol.118 , pp. 1047-1050
    • Rusyn, I.1    Daston, G.P.2
  • 6
    • 0036708522 scopus 로고    scopus 로고
    • The maximum common substructure as a molecular depiction in a supervised classification context: Experiments in quantitative structure/biodegradability relationships
    • Cuissart, B.; Touffet, F.; Cremilleux, B.; Bureau, R.; Rault, S. The maximum common substructure as a molecular depiction in a supervised classification context: experiments in quantitative structure/biodegradability relationships J. Chem. Inf. Comput. Sci. 2002, 42, 1043-1052
    • (2002) J. Chem. Inf. Comput. Sci. , vol.42 , pp. 1043-1052
    • Cuissart, B.1    Touffet, F.2    Cremilleux, B.3    Bureau, R.4    Rault, S.5
  • 7
    • 79953188035 scopus 로고    scopus 로고
    • A simple protocol for the comparative analysis of the structure and occurrence of biochemical pathways across superkingdoms
    • Andreini, C.; Bertini, I.; Cavallaro, G.; Decaria, L.; Rosato, A. A simple protocol for the comparative analysis of the structure and occurrence of biochemical pathways across superkingdoms J. Chem. Inf. Model. 2010, 51, 730-738
    • (2010) J. Chem. Inf. Model. , vol.51 , pp. 730-738
    • Andreini, C.1    Bertini, I.2    Cavallaro, G.3    Decaria, L.4    Rosato, A.5
  • 9
    • 0033797060 scopus 로고    scopus 로고
    • Predicting Ready Biodegradability in the Japanese Ministry of International Trade and Industry Test
    • Tunkel, J.; Howard, P. H.; Boethling, R. S.; Stiteler, W.; Loonen, H. Predicting Ready Biodegradability in the Japanese Ministry of International Trade and Industry Test Environ. Toxicol. Chem. 2000, 19, 2478-2485
    • (2000) Environ. Toxicol. Chem. , vol.19 , pp. 2478-2485
    • Tunkel, J.1    Howard, P.H.2    Boethling, R.S.3    Stiteler, W.4    Loonen, H.5
  • 10
    • 0033872735 scopus 로고    scopus 로고
    • Prediction for biodegradability of chemicals by an empirical flowchart
    • Hiromatsu, K.; Yakabe, Y.; Katagiri, K.; Nishihara, T. Prediction for biodegradability of chemicals by an empirical flowchart Chemosphere. 2000, 41, 1749-1754
    • (2000) Chemosphere. , vol.41 , pp. 1749-1754
    • Hiromatsu, K.1    Yakabe, Y.2    Katagiri, K.3    Nishihara, T.4
  • 11
    • 33847196497 scopus 로고    scopus 로고
    • Biochemical interpretation of quantitative structure-activity relationships (QSAR) for biodegradation of N-heterocycles: A complementary approach to predict biodegradability
    • Philipp, B.; Hoff, M.; Germa, F.; Schink, B.; Beimborn, D.; Mersch-Sundermann, V. Biochemical interpretation of quantitative structure-activity relationships (QSAR) for biodegradation of N-heterocycles: a complementary approach to predict biodegradability Environ. Sci. Technol. 2007, 41, 1390-1398
    • (2007) Environ. Sci. Technol. , vol.41 , pp. 1390-1398
    • Philipp, B.1    Hoff, M.2    Germa, F.3    Schink, B.4    Beimborn, D.5    Mersch-Sundermann, V.6
  • 12
    • 0037498035 scopus 로고    scopus 로고
    • Microbial pathway prediction: A functional group approach
    • Hou, B. K.; Wackett, L. P.; Ellis, L. B. Microbial pathway prediction: a functional group approach J. Chem. Inf. Comput. Sci. 2003, 43, 1051-1057
    • (2003) J. Chem. Inf. Comput. Sci. , vol.43 , pp. 1051-1057
    • Hou, B.K.1    Wackett, L.P.2    Ellis, L.B.3
  • 13
    • 2942737435 scopus 로고    scopus 로고
    • Induction of decision trees via evolutionary programming
    • DeLisle, R. K.; Dixon, S. L. Induction of decision trees via evolutionary programming J. Chem. Inf. Comput. Sci. 2004, 44, 862-870
    • (2004) J. Chem. Inf. Comput. Sci. , vol.44 , pp. 862-870
    • Delisle, R.K.1    Dixon, S.L.2
  • 14
    • 0142089684 scopus 로고    scopus 로고
    • Recent developments in broadly applicable structure-biodegradability relationships
    • Jaworska, J. S.; Boethling, R. S.; Howard, P. H. Recent developments in broadly applicable structure-biodegradability relationships Environ. Toxicol. Chem. 2003, 22, 1710-1723
    • (2003) Environ. Toxicol. Chem. , vol.22 , pp. 1710-1723
    • Jaworska, J.S.1    Boethling, R.S.2    Howard, P.H.3
  • 15
    • 0037366605 scopus 로고    scopus 로고
    • The combinatorial synthesis of bicyclic privileged structures or privileged substructures
    • Horton, D. A.; Bourne, G. T.; Smythe, M. L. The combinatorial synthesis of bicyclic privileged structures or privileged substructures Chem. Rev. 2003, 103, 893-930
    • (2003) Chem. Rev. , vol.103 , pp. 893-930
    • Horton, D.A.1    Bourne, G.T.2    Smythe, M.L.3
  • 16
    • 0007357272 scopus 로고
    • Guideline for Testing of Chemicals
    • OECD 301. OECD: Paris.
    • OECD 301. Guideline for Testing of Chemicals. Ready Biodegradability. OECD: Paris, 1992.
    • (1992) Ready Biodegradability
  • 17
    • 75349111301 scopus 로고    scopus 로고
    • Evaluation of the OECD 314B activated sludge die-away test for assessing the biodegradation of pharmaceuticals
    • Ericson, J. F. Evaluation of the OECD 314B activated sludge die-away test for assessing the biodegradation of pharmaceuticals Environ. Sci. Technol. 2010, 44, 375-381
    • (2010) Environ. Sci. Technol. , vol.44 , pp. 375-381
    • Ericson, J.F.1
  • 19
    • 67849104638 scopus 로고    scopus 로고
    • PubChem: A public information system for analyzing bioactivities of small molecules
    • Wang, Y.; Xiao, J.; Suzek, T. O.; Zhang, J.; Wang, J.; Bryant, S. H. PubChem: a public information system for analyzing bioactivities of small molecules Nucleic Acids Res. 2009, 37, W623-633
    • (2009) Nucleic Acids Res. , vol.37 , pp. 623-633
    • Wang, Y.1    Xiao, J.2    Suzek, T.O.3    Zhang, J.4    Wang, J.5    Bryant, S.H.6
  • 21
    • 79953005609 scopus 로고    scopus 로고
    • PaDEL-descriptor: An open source software to calculate molecular descriptors and fingerprints
    • Yap, C. W. PaDEL-descriptor: An open source software to calculate molecular descriptors and fingerprints J. Comput. Chem. 2011, 32, 1466-1474
    • (2011) J. Comput. Chem. , vol.32 , pp. 1466-1474
    • Yap, C.W.1
  • 24
    • 79960245348 scopus 로고    scopus 로고
    • Classification of Cytochrome P450 Inhibitors and non-Inhibitors using Combined Classifiers
    • Cheng, F.; Yu, Y.; Shen, J.; Yang, L.; Li, W.; Liu, G.; Lee, P. W.; Tang, Y. Classification of Cytochrome P450 Inhibitors and non-Inhibitors using Combined Classifiers J. Chem. Inf. Model. 2011, 51, 996-1011
    • (2011) J. Chem. Inf. Model. , vol.51 , pp. 996-1011
    • Cheng, F.1    Yu, Y.2    Shen, J.3    Yang, L.4    Li, W.5    Liu, G.6    Lee, P.W.7    Tang, Y.8
  • 25
    • 85192675514 scopus 로고    scopus 로고
    • In silico prediction of blood-brain partitioning using a chemometric method called genetic algorithm based variable selection
    • Shen, J.; Du, Y.; Zhao, Y.; Liu, G.; Tang, Y. In silico prediction of blood-brain partitioning using a chemometric method called genetic algorithm based variable selection QSAR Comb. Sci. 2008, 72, 635-645
    • (2008) QSAR Comb. Sci. , vol.72 , pp. 635-645
    • Shen, J.1    Du, Y.2    Zhao, Y.3    Liu, G.4    Tang, Y.5
  • 26
    • 54949134905 scopus 로고    scopus 로고
    • Chemical substructures that enrich for biological activity
    • Klekota, J.; Roth, F. P. Chemical substructures that enrich for biological activity Bioinformatics. 2008, 24, 2518-2525
    • (2008) Bioinformatics. , vol.24 , pp. 2518-2525
    • Klekota, J.1    Roth, F.P.2
  • 28
    • 36949022890 scopus 로고    scopus 로고
    • Predictive QSAR modeling workflow, model applicability domains, and virtual screening
    • Tropsha, A.; Golbraikh, A. Predictive QSAR modeling workflow, model applicability domains, and virtual screening Curr. Pharm. Des. 2007, 13, 3494-3504
    • (2007) Curr. Pharm. Des. , vol.13 , pp. 3494-3504
    • Tropsha, A.1    Golbraikh, A.2
  • 29
    • 45749129400 scopus 로고    scopus 로고
    • Use of cell viability assay data improves the prediction accuracy of conventional quantitative structure-activity relationship models of animal carcinogenicity
    • Zhu, H.; Rusyn, I.; Richard, A.; Tropsha, A. Use of cell viability assay data improves the prediction accuracy of conventional quantitative structure-activity relationship models of animal carcinogenicity Environ. Health. Perspect. 2008, 116, 506-513
    • (2008) Environ. Health. Perspect. , vol.116 , pp. 506-513
    • Zhu, H.1    Rusyn, I.2    Richard, A.3    Tropsha, A.4
  • 30
    • 77951213013 scopus 로고    scopus 로고
    • Modeling liver-related adverse effects of drugs using knearest neighbor quantitative structure-activity relationship method
    • Rodgers, A. D.; Zhu, H.; Fourches, D.; Rusyn, I.; Tropsha, A. Modeling liver-related adverse effects of drugs using knearest neighbor quantitative structure-activity relationship method Chem. Res. Toxicol. 2010, 23, 724-732
    • (2010) Chem. Res. Toxicol. , vol.23 , pp. 724-732
    • Rodgers, A.D.1    Zhu, H.2    Fourches, D.3    Rusyn, I.4    Tropsha, A.5
  • 31
    • 34249753618 scopus 로고
    • Support-Vector Networks
    • Corinna, C.; Vladimir, V. Support-Vector Networks Mach. Learn. 1995, 20, 273-297
    • (1995) Mach. Learn. , vol.20 , pp. 273-297
    • Corinna, C.1    Vladimir, V.2
  • 33
    • 84926662675 scopus 로고
    • Nearest neighbor pattern classification
    • Cover, T. M.; Hart, P. E. Nearest neighbor pattern classification IEEE. T. Inform. Theory. 1967, 13, 21-27
    • (1967) IEEE. T. Inform. Theory. , vol.13 , pp. 21-27
    • Cover, T.M.1    Hart, P.E.2
  • 34
    • 39449088858 scopus 로고    scopus 로고
    • Naive Bayes classification using 2D pharmacophore feature triplet vectors
    • Watson, P. Naive Bayes classification using 2D pharmacophore feature triplet vectors J. Chem. Inf. Model. 2008, 48, 166-178
    • (2008) J. Chem. Inf. Model. , vol.48 , pp. 166-178
    • Watson, P.1
  • 35
    • 77954068708 scopus 로고    scopus 로고
    • Estimation of ADME properties with substructure pattern recognition
    • Shen, J.; Cheng, F.; Xu, Y.; Li, W.; Tang, Y. Estimation of ADME properties with substructure pattern recognition J. Chem. Inf. Model. 2010, 50, 1034-1041
    • (2010) J. Chem. Inf. Model. , vol.50 , pp. 1034-1041
    • Shen, J.1    Cheng, F.2    Xu, Y.3    Li, W.4    Tang, Y.5
  • 37
    • 33846923287 scopus 로고    scopus 로고
    • In silico prediction of cytochrome P450 2D6 and 3A4 inhibition using Gaussian kernel weighted k-nearest neighbor and extended connectivity fingerprints, including structural fragment analysis of inhibitors versus noninhibitors
    • Jensen, B. F.; Vind, C.; Padkjaer, S. B.; Brockhoff, P. B.; Refsgaard, H. H. In silico prediction of cytochrome P450 2D6 and 3A4 inhibition using Gaussian kernel weighted k-nearest neighbor and extended connectivity fingerprints, including structural fragment analysis of inhibitors versus noninhibitors J. Med. Chem. 2007, 50, 501-511
    • (2007) J. Med. Chem. , vol.50 , pp. 501-511
    • Jensen, B.F.1    Vind, C.2    Padkjaer, S.B.3    Brockhoff, P.B.4    Refsgaard, H.H.5
  • 38
    • 0033931867 scopus 로고    scopus 로고
    • Assessing the accuracy of prediction algorithms for classification: An overview
    • Baldi, P.; Brunak, S.; Chauvin, Y.; Andersen, C. A.; Nielsen, H. Assessing the accuracy of prediction algorithms for classification: an overview Bioinformatics. 2000, 16, 412-424
    • (2000) Bioinformatics. , vol.16 , pp. 412-424
    • Baldi, P.1    Brunak, S.2    Chauvin, Y.3    Andersen, C.A.4    Nielsen, H.5
  • 39
    • 42749092988 scopus 로고    scopus 로고
    • The importance of the domain of applicability in QSAR modeling
    • Weaver, S.; Gleeson, M. P. The importance of the domain of applicability in QSAR modeling J. Mol. Graphics Modell. 2008, 26, 1315-1326
    • (2008) J. Mol. Graphics Modell. , vol.26 , pp. 1315-1326
    • Weaver, S.1    Gleeson, M.P.2
  • 40
    • 54249125512 scopus 로고    scopus 로고
    • Critical assessment of QSAR models of environmental toxicity against Tetrahymena pyriformis: Focusing on applicability domain and overfitting by variable selection
    • Tetko, I. V.; Sushko, I.; Pandey, A. K.; Zhu, H.; Tropsha, A.; Papa, E.; Oberg, T.; Todeschini, R.; Fourches, D.; Varnek, A. Critical assessment of QSAR models of environmental toxicity against Tetrahymena pyriformis: focusing on applicability domain and overfitting by variable selection J. Chem. Inf. Model. 2008, 48, 1733-1746
    • (2008) J. Chem. Inf. Model. , vol.48 , pp. 1733-1746
    • Tetko, I.V.1    Sushko, I.2    Pandey, A.K.3    Zhu, H.4    Tropsha, A.5    Papa, E.6    Oberg, T.7    Todeschini, R.8    Fourches, D.9    Varnek, A.10
  • 42
    • 79951721392 scopus 로고    scopus 로고
    • In silico prediction of Tetrahymena pyriformis toxicity for diverse industrial chemicals with substructure pattern recognition and machine learning methods
    • Cheng, F.; Shen, J.; Yu, Y.; Li, W.; Liu, G.; Lee, P. W.; Tang, Y. In silico prediction of Tetrahymena pyriformis toxicity for diverse industrial chemicals with substructure pattern recognition and machine learning methods Chemosphere. 2011, 82, 1636-1643
    • (2011) Chemosphere. , vol.82 , pp. 1636-1643
    • Cheng, F.1    Shen, J.2    Yu, Y.3    Li, W.4    Liu, G.5    Lee, P.W.6    Tang, Y.7
  • 43
  • 44
    • 65049084207 scopus 로고    scopus 로고
    • Structure-biodegradability relationship of nonylphenol isomers during biological wastewater treatment process
    • Hao, R.; Li, J.; Zhou, Y.; Cheng, S.; Zhang, Y. Structure- biodegradability relationship of nonylphenol isomers during biological wastewater treatment process Chemosphere 2009, 75, 987-994
    • (2009) Chemosphere , vol.75 , pp. 987-994
    • Hao, R.1    Li, J.2    Zhou, Y.3    Cheng, S.4    Zhang, Y.5
  • 45
    • 38849181634 scopus 로고    scopus 로고
    • Review of Estimation Models for Biodegradation
    • Pavan, M.; Worth, A. P. Review of Estimation Models for Biodegradation QSAR Comb. Sci. 2008, 27, 32-40
    • (2008) QSAR Comb. Sci. , vol.27 , pp. 32-40
    • Pavan, M.1    Worth, A.P.2


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