-
1
-
-
84905019193
-
Understanding Protein-Surface Interactions at the Atomistic Level through the Synergistic Development of Experimental and Molecular Simulation Methods
-
American Chemical Society: Washington, DC
-
Abramyan, T.; Collier, G.; Kucukkal, T. G.; Li, X.; Snyder, J. A.; Thyparambil, A. A.; Vellore, N. A.; Wei, Y.; Yancey, J. A.; Stuart, S. J.; Latour, R. A. Understanding Protein-Surface Interactions at the Atomistic Level through the Synergistic Development of Experimental and Molecular Simulation Methods. Proteins at Interfaces III State of the Art; American Chemical Society: Washington, DC, 2012; Vol. 1120, pp 197-228.
-
(2012)
Proteins at Interfaces III State of the Art
, vol.1120
, pp. 197-228
-
-
Abramyan, T.1
Collier, G.2
Kucukkal, T.G.3
Li, X.4
Snyder, J.A.5
Thyparambil, A.A.6
Vellore, N.A.7
Wei, Y.8
Yancey, J.A.9
Stuart, S.J.10
Latour, R.A.11
-
2
-
-
0037013360
-
A Brownian Dynamics Study of the Initial Stages of Hen Egg-White Lysozyme Adsorption at a Solid Interface
-
Ravichandran, S.; Madura, J. D.; Talbot, J. A Brownian Dynamics Study of the Initial Stages of Hen Egg-White Lysozyme Adsorption at a Solid Interface J. Phys. Chem. B 2001, 105, 3610-3613
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 3610-3613
-
-
Ravichandran, S.1
Madura, J.D.2
Talbot, J.3
-
3
-
-
0013172998
-
Controlling antibody orientation on charged self-assembled monolayers
-
Chen, S. F.; Liu, L. Y.; Zhou, J.; Jiang, S. Y. Controlling antibody orientation on charged self-assembled monolayers Langmuir 2003, 19, 2859-2864
-
(2003)
Langmuir
, vol.19
, pp. 2859-2864
-
-
Chen, S.F.1
Liu, L.Y.2
Zhou, J.3
Jiang, S.Y.4
-
4
-
-
0037447211
-
Orientation of adsorbed antibodies on charged surfaces by computer simulation based on a united-residue model
-
Zhou, J.; Chen, S. F.; Jiang, S. Y. Orientation of adsorbed antibodies on charged surfaces by computer simulation based on a united-residue model Langmuir 2003, 19, 3472-3478
-
(2003)
Langmuir
, vol.19
, pp. 3472-3478
-
-
Zhou, J.1
Chen, S.F.2
Jiang, S.Y.3
-
5
-
-
76749117243
-
Parallel tempering Monte Carlo simulations of lysozyme orientation on charged surfaces
-
Xie, Y.; Zhou, J.; Jiang, S. Y. Parallel tempering Monte Carlo simulations of lysozyme orientation on charged surfaces J. Chem. Phys. 2010, 132, 065101
-
(2010)
J. Chem. Phys.
, vol.132
, pp. 065101
-
-
Xie, Y.1
Zhou, J.2
Jiang, S.Y.3
-
6
-
-
9144237008
-
Molecular simulation studies of the orientation and conformation of cytochrome c adsorbed on self-assembled monolayers
-
Zhou, J.; Zheng, J.; Jiang, S. Y. Molecular simulation studies of the orientation and conformation of cytochrome c adsorbed on self-assembled monolayers J. Phys. Chem. B 2004, 108, 17418-17424
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 17418-17424
-
-
Zhou, J.1
Zheng, J.2
Jiang, S.Y.3
-
7
-
-
84884187910
-
Multiscale Simulations of Protein G B1 Adsorbed on Charged Self-Assembled Monolayers
-
Liu, J.; Liao, C. Y.; Zhou, J. Multiscale Simulations of Protein G B1 Adsorbed on Charged Self-Assembled Monolayers Langmuir 2013, 29, 11366-11374
-
(2013)
Langmuir
, vol.29
, pp. 11366-11374
-
-
Liu, J.1
Liao, C.Y.2
Zhou, J.3
-
8
-
-
84901675840
-
Computer simulation of bioenergy-oriented enzyme immobilization
-
Zhao, D. H.; Peng, C. W.; Liao, C. Y.; Zhou, J. Computer simulation of bioenergy-oriented enzyme immobilization CIESC J. 2014, 65, 1828-1834
-
(2014)
CIESC J.
, vol.65
, pp. 1828-1834
-
-
Zhao, D.H.1
Peng, C.W.2
Liao, C.Y.3
Zhou, J.4
-
9
-
-
67649904993
-
Selective protein and DNA adsorption on PLL-PEG films modulated by ionic strength
-
Schlapak, R.; Armitage, D.; Saucedo-Zeni, N.; Chrzanowski, W.; Hohage, M.; Caruana, D.; Howorka, S. Selective protein and DNA adsorption on PLL-PEG films modulated by ionic strength Soft Matter 2009, 5, 613-621
-
(2009)
Soft Matter
, vol.5
, pp. 613-621
-
-
Schlapak, R.1
Armitage, D.2
Saucedo-Zeni, N.3
Chrzanowski, W.4
Hohage, M.5
Caruana, D.6
Howorka, S.7
-
10
-
-
25844440748
-
Effects of Ionic Strength and Surface Charge on Protein Adsorption at PEGylated Surfaces
-
Pasche, S.; Vörös, J.; Griesser, H. J.; Spencer, N. D.; Textor, M. Effects of Ionic Strength and Surface Charge on Protein Adsorption at PEGylated Surfaces J. Phys. Chem. B 2005, 109, 17545-17552
-
(2005)
J. Phys. Chem. B
, vol.109
, pp. 17545-17552
-
-
Pasche, S.1
Vörös, J.2
Griesser, H.J.3
Spencer, N.D.4
Textor, M.5
-
11
-
-
84891379109
-
Probing the Contribution of Different Intermolecular Forces to the Adsorption of Spheroproteins onto Hydrophilic Surfaces
-
Borges, J.; Campina, J. M.; Silva, A. F. Probing the Contribution of Different Intermolecular Forces to the Adsorption of Spheroproteins onto Hydrophilic Surfaces J. Phys. Chem. B 2013, 117, 16565-16576
-
(2013)
J. Phys. Chem. B
, vol.117
, pp. 16565-16576
-
-
Borges, J.1
Campina, J.M.2
Silva, A.F.3
-
12
-
-
84857822466
-
Self-assembly of Class II Hydrophobins on Polar Surfaces
-
Grunér, M. S.; Szilvay, G. R.; Berglin, M.; Lienemann, M.; Laaksonen, P.; Linder, M. B. Self-assembly of Class II Hydrophobins on Polar Surfaces Langmuir 2012, 28, 4293-4300
-
(2012)
Langmuir
, vol.28
, pp. 4293-4300
-
-
Grunér, M.S.1
Szilvay, G.R.2
Berglin, M.3
Lienemann, M.4
Laaksonen, P.5
Linder, M.B.6
-
13
-
-
84899806114
-
Mesoscopic Coarse-Grained Simulations of Lysozyme Adsorption
-
Yu, G. B.; Liu, J.; Zhou, J. Mesoscopic Coarse-Grained Simulations of Lysozyme Adsorption J. Phys. Chem. B 2014, 118, 4451-4460
-
(2014)
J. Phys. Chem. B
, vol.118
, pp. 4451-4460
-
-
Yu, G.B.1
Liu, J.2
Zhou, J.3
-
14
-
-
0000010524
-
Hydrophobic moments and protein structure
-
Eisenberg, D.; Weiss, R. M.; Terwilliger, T. C.; Wilcox, W. Hydrophobic moments and protein structure Faraday Symp. Chem. Soc. 1982, 17, 109-120
-
(1982)
Faraday Symp. Chem. Soc.
, vol.17
, pp. 109-120
-
-
Eisenberg, D.1
Weiss, R.M.2
Terwilliger, T.C.3
Wilcox, W.4
-
15
-
-
0021691817
-
Analysis of membrane and surface protein sequences with the hydrophobic moment plot
-
Eisenberg, D.; Schwarz, E.; Komaromy, M.; Wall, R. Analysis of membrane and surface protein sequences with the hydrophobic moment plot J. Mol. Biol. 1984, 179, 125-142
-
(1984)
J. Mol. Biol.
, vol.179
, pp. 125-142
-
-
Eisenberg, D.1
Schwarz, E.2
Komaromy, M.3
Wall, R.4
-
16
-
-
0034456592
-
Use of hydrophobic moment plot methodology to aid the identification of oblique orientated alpha-helices
-
Harris, F.; Wallace, J.; Phoenix, D. A. Use of hydrophobic moment plot methodology to aid the identification of oblique orientated alpha-helices Mol. Membr. Biol. 2000, 17, 201-207
-
(2000)
Mol. Membr. Biol.
, vol.17
, pp. 201-207
-
-
Harris, F.1
Wallace, J.2
Phoenix, D.A.3
-
17
-
-
0036123661
-
The hydrophobic moment and its use in the classification of amphiphilic structures (Review)
-
Phoenix, D. A.; Harris, F. The hydrophobic moment and its use in the classification of amphiphilic structures (Review) Mol. Membr. Biol. 2002, 19, 1-10
-
(2002)
Mol. Membr. Biol.
, vol.19
, pp. 1-10
-
-
Phoenix, D.A.1
Harris, F.2
-
18
-
-
15244340260
-
Investigation of hydrophobic moment and hydrophobicity properties for transmembrane alpha-helices
-
Wallace, J.; Daman, O. A.; Harris, F.; Phoenix, D. A. Investigation of hydrophobic moment and hydrophobicity properties for transmembrane alpha-helices Theor. Biol. Med. Modell. 2004, 1, 5
-
(2004)
Theor. Biol. Med. Modell.
, vol.1
, pp. 5
-
-
Wallace, J.1
Daman, O.A.2
Harris, F.3
Phoenix, D.A.4
-
19
-
-
0000929505
-
The hydrophobic moment detects periodicity in protein hydrophobicity
-
Eisenberg, D.; Weiss, R. M.; Terwilliger, T. C. The hydrophobic moment detects periodicity in protein hydrophobicity Proc. Natl. Acad. Sci. U. S. A. 1984, 81, 140-144
-
(1984)
Proc. Natl. Acad. Sci. U. S. A.
, vol.81
, pp. 140-144
-
-
Eisenberg, D.1
Weiss, R.M.2
Terwilliger, T.C.3
-
20
-
-
0345411957
-
Hydrophobic moments of tertiary protein structures
-
Silverman, B. D. Hydrophobic moments of tertiary protein structures Proteins: Struct., Funct., Genet. 2003, 53, 880-888
-
(2003)
Proteins: Struct., Funct., Genet.
, vol.53
, pp. 880-888
-
-
Silverman, B.D.1
-
21
-
-
42949162627
-
Peptide adsorption on a hydrophobic surface results from an interplay of solvation, surface, and intrapeptide forces
-
Horinek, D.; Serr, A.; Geisler, M.; Pirzer, T.; Slotta, U.; Lud, S.; Garrido, J.; Scheibel, T.; Hugel, T.; Netz, R. Peptide adsorption on a hydrophobic surface results from an interplay of solvation, surface, and intrapeptide forces Proc. Natl. Acad. Sci. U. S. A. 2008, 105, 2842-2847
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 2842-2847
-
-
Horinek, D.1
Serr, A.2
Geisler, M.3
Pirzer, T.4
Slotta, U.5
Lud, S.6
Garrido, J.7
Scheibel, T.8
Hugel, T.9
Netz, R.10
-
22
-
-
77956068610
-
Adsorption of an antimicrobial peptide on self-assembled monolayers by molecular dynamics simulation
-
Soliman, W.; Bhattacharjee, S.; Kaur, K. Adsorption of an antimicrobial peptide on self-assembled monolayers by molecular dynamics simulation J. Phys. Chem. B 2010, 114, 11292-11302
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 11292-11302
-
-
Soliman, W.1
Bhattacharjee, S.2
Kaur, K.3
-
23
-
-
77749309609
-
Comparative Molecular Dynamics Study of Aβ Adsorption on the Self-Assembled Monolayers
-
Wang, Q.; Zhao, C.; Zhao, J.; Wang, J.; Yang, J.-C.; Yu, X.; Zheng, J. Comparative Molecular Dynamics Study of Aβ Adsorption on the Self-Assembled Monolayers Langmuir 2009, 26, 3308-3316
-
(2009)
Langmuir
, vol.26
, pp. 3308-3316
-
-
Wang, Q.1
Zhao, C.2
Zhao, J.3
Wang, J.4
Yang, J.-C.5
Yu, X.6
Zheng, J.7
-
24
-
-
77955043921
-
1-42Monomer Adsorbed on the Self-Assembled Monolayers
-
1-42Monomer Adsorbed on the Self-Assembled Monolayers Langmuir 2010, 26, 12722-12732
-
(2010)
Langmuir
, vol.26
, pp. 12722-12732
-
-
Wang, Q.1
Zhao, J.2
Yu, X.3
Zhao, C.4
Li, L.5
Zheng, J.6
-
25
-
-
84862512817
-
Molecular dynamics simulations of peptide adsorption on self-assembled monolayers
-
Xie, Y.; Liu, M. F.; Zhou, J. Molecular dynamics simulations of peptide adsorption on self-assembled monolayers Appl. Surf. Sci. 2012, 258, 8153-8159
-
(2012)
Appl. Surf. Sci.
, vol.258
, pp. 8153-8159
-
-
Xie, Y.1
Liu, M.F.2
Zhou, J.3
-
26
-
-
26844460799
-
Strong Resistance of Phosphorylcholine Self-Assembled Monolayers to Protein Adsorption: Insights into Nonfouling Properties of Zwitterionic Materials
-
Chen, S.; Zheng, J.; Li, L.; Jiang, S. Strong Resistance of Phosphorylcholine Self-Assembled Monolayers to Protein Adsorption: Insights into Nonfouling Properties of Zwitterionic Materials J. Am. Chem. Soc. 2005, 127, 14473-14478
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 14473-14478
-
-
Chen, S.1
Zheng, J.2
Li, L.3
Jiang, S.4
-
27
-
-
68949194700
-
Hydrophobins: Proteins that self assemble at interfaces
-
Linder, M. B. Hydrophobins: Proteins that self assemble at interfaces Curr. Opin. Colloid Interface Sci. 2009, 14, 356-363
-
(2009)
Curr. Opin. Colloid Interface Sci.
, vol.14
, pp. 356-363
-
-
Linder, M.B.1
-
28
-
-
24344501018
-
Hydrophobins: The protein-amphiphiles of filamentous fungi
-
Linder, M. B.; Szilvay, G. R.; Nakari-Setälä, T.; Penttilä, M. E. Hydrophobins: the protein-amphiphiles of filamentous fungi FEMS Microbiol. Rev. 2005, 29, 877-896
-
(2005)
FEMS Microbiol. Rev.
, vol.29
, pp. 877-896
-
-
Linder, M.B.1
Szilvay, G.R.2
Nakari-Setälä, T.3
Penttilä, M.E.4
-
29
-
-
33746064591
-
Two crystal structures of Trichoderma reesei hydrophobin HFBI - The structure of a protein amphiphile with and without detergent interaction
-
Hakanpää, J.; Szilvay, G. R.; Kaljunen, H.; Maksimainen, M.; Linder, M. B.; Rouvinen, J. Two crystal structures of Trichoderma reesei hydrophobin HFBI - The structure of a protein amphiphile with and without detergent interaction Protein Sci. 2006, 15, 2129-2140
-
(2006)
Protein Sci.
, vol.15
, pp. 2129-2140
-
-
Hakanpää, J.1
Szilvay, G.R.2
Kaljunen, H.3
Maksimainen, M.4
Linder, M.B.5
Rouvinen, J.6
-
31
-
-
84862296168
-
Hydrophobins: Exceptional proteins for many applications in brewery environment and other bio-industries
-
Khalesi, M.; Deckers, S. M.; Gebruers, K.; Vissers, L.; Verachtert, H.; Derdelinckx, G. Hydrophobins: Exceptional proteins for many applications in brewery environment and other bio-industries Cerevisia 2012, 37, 3-9
-
(2012)
Cerevisia
, vol.37
, pp. 3-9
-
-
Khalesi, M.1
Deckers, S.M.2
Gebruers, K.3
Vissers, L.4
Verachtert, H.5
Derdelinckx, G.6
-
32
-
-
84874403963
-
Kinetic and Equilibrium Aspects of Adsorption and Desorption of Class II Hydrophobins HFBI and HFBII at Silicon Oxynitride/Water and Air/Water Interfaces
-
Krivosheeva, O.; Dedinaite, A.; Linder, M. B.; Tilton, R. D.; Claesson, P. M. Kinetic and Equilibrium Aspects of Adsorption and Desorption of Class II Hydrophobins HFBI and HFBII at Silicon Oxynitride/Water and Air/Water Interfaces Langmuir 2013, 29, 2683-2691
-
(2013)
Langmuir
, vol.29
, pp. 2683-2691
-
-
Krivosheeva, O.1
Dedinaite, A.2
Linder, M.B.3
Tilton, R.D.4
Claesson, P.M.5
-
33
-
-
84868121622
-
Adsorption Behavior of Hydrophobin Proteins on Polydimethylsiloxane Substrates
-
Liu, Y. Z.; Wu, M.; Feng, X. Z.; Shao, X. G.; Cai, W. S. Adsorption Behavior of Hydrophobin Proteins on Polydimethylsiloxane Substrates J. Phys. Chem. B 2012, 116, 12227-12234
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 12227-12234
-
-
Liu, Y.Z.1
Wu, M.2
Feng, X.Z.3
Shao, X.G.4
Cai, W.S.5
-
34
-
-
80255134533
-
Molecular dynamics of the hydrophobic patch that immobilizes hydrophobin protein HFBII on silicon
-
Moldovan, C.; Thompson, D. Molecular dynamics of the hydrophobic patch that immobilizes hydrophobin protein HFBII on silicon J. Mol. Model. 2011, 17, 2227-2235
-
(2011)
J. Mol. Model.
, vol.17
, pp. 2227-2235
-
-
Moldovan, C.1
Thompson, D.2
-
35
-
-
80052886006
-
Diffusion of hydrophobin proteins in solution and interactions with a graphite surface
-
Mereghetti, P.; Wade, R. Diffusion of hydrophobin proteins in solution and interactions with a graphite surface BMC Biophys. 2011, 4, 1-11
-
(2011)
BMC Biophys.
, vol.4
, pp. 1-11
-
-
Mereghetti, P.1
Wade, R.2
-
36
-
-
84868114083
-
Molecular Dynamics Simulation of Hydrophobin Proteins on the Surface of Single-walled Carbon Nanotubes
-
Liu, Y. Z.; Cai, W. S.; Shao, X. G. Molecular Dynamics Simulation of Hydrophobin Proteins on the Surface of Single-walled Carbon Nanotubes Chem. J. Chin. Univ. 2012, 33, 2013-2018
-
(2012)
Chem. J. Chin. Univ.
, vol.33
, pp. 2013-2018
-
-
Liu, Y.Z.1
Cai, W.S.2
Shao, X.G.3
-
37
-
-
84879176334
-
Nanoscale Dynamics and Protein Adhesivity of Alkylamine Self-Assembled Monolayers on Graphene
-
O'Mahony, S.; O'Dwyer, C.; Nijhuis, C. A.; Greer, J. C.; Quinn, A. J.; Thompson, D. Nanoscale Dynamics and Protein Adhesivity of Alkylamine Self-Assembled Monolayers on Graphene Langmuir 2013, 29, 7271-7282
-
(2013)
Langmuir
, vol.29
, pp. 7271-7282
-
-
O'Mahony, S.1
O'Dwyer, C.2
Nijhuis, C.A.3
Greer, J.C.4
Quinn, A.J.5
Thompson, D.6
-
38
-
-
84862162535
-
Molecular Simulation of Hydrophobin Adsorption at an Oil-Water Interface
-
Cheung, D. L. Molecular Simulation of Hydrophobin Adsorption at an Oil-Water Interface Langmuir 2012, 28, 8730-8736
-
(2012)
Langmuir
, vol.28
, pp. 8730-8736
-
-
Cheung, D.L.1
-
39
-
-
85039708024
-
Molecular simulation of adsorption of hydrophobin HFBI to the air-water, DPPC-water and decane-water interfaces
-
Euston, S. R. Molecular simulation of adsorption of hydrophobin HFBI to the air-water, DPPC-water and decane-water interfaces Food Hydrocolloids 2013, 1-9
-
(2013)
Food Hydrocolloids
, pp. 1-9
-
-
Euston, S.R.1
-
40
-
-
80053307171
-
Lysozyme Adsorption on Polyethylene Surfaces: Why Are Long Simulations Needed?
-
Wei, T.; Carignano, M. A.; Szleifer, I. Lysozyme Adsorption on Polyethylene Surfaces: Why Are Long Simulations Needed? Langmuir 2011, 27, 12074-12081
-
(2011)
Langmuir
, vol.27
, pp. 12074-12081
-
-
Wei, T.1
Carignano, M.A.2
Szleifer, I.3
-
41
-
-
84860112219
-
Structure, Orientation, and Surface Interaction of Alzheimer Amyloid-β Peptides on the Graphite
-
Yu, X.; Wang, Q.; Lin, Y.; Zhao, J.; Zhao, C.; Zheng, J. Structure, Orientation, and Surface Interaction of Alzheimer Amyloid-β Peptides on the Graphite Langmuir 2012, 28, 6595-6605
-
(2012)
Langmuir
, vol.28
, pp. 6595-6605
-
-
Yu, X.1
Wang, Q.2
Lin, Y.3
Zhao, J.4
Zhao, C.5
Zheng, J.6
-
42
-
-
84865697706
-
Molecular Dynamics Simulation of Lysozyme Adsorption/Desorption on Hydrophobic Surfaces
-
Wei, T.; Carignano, M. A.; Szleifer, I. Molecular Dynamics Simulation of Lysozyme Adsorption/Desorption on Hydrophobic Surfaces J. Phys. Chem. B 2012, 116, 10189-10194
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 10189-10194
-
-
Wei, T.1
Carignano, M.A.2
Szleifer, I.3
-
43
-
-
84890858674
-
Molecular simulations of myoglobin adsorbed on rutile (110) and (001) surfaces
-
Yang, C.; Peng, C. W.; Zhao, D. H.; Liao, C. Y.; Zhou, J.; Lu, X. H. Molecular simulations of myoglobin adsorbed on rutile (110) and (001) surfaces Fluid Phase Equilib. 2014, 362, 349-354
-
(2014)
Fluid Phase Equilib.
, vol.362
, pp. 349-354
-
-
Yang, C.1
Peng, C.W.2
Zhao, D.H.3
Liao, C.Y.4
Zhou, J.5
Lu, X.H.6
-
44
-
-
84901700032
-
Computer Simulations of Fibronectin Adsorption on Graphene Modified Titanium Dioxide Surfaces
-
Yang, C.; Peng, C. W.; Liao, C. Y.; Zhou, J. Computer Simulations of Fibronectin Adsorption on Graphene Modified Titanium Dioxide Surfaces Acta Chim. Sin. 2014, 72, 401-406
-
(2014)
Acta Chim. Sin.
, vol.72
, pp. 401-406
-
-
Yang, C.1
Peng, C.W.2
Liao, C.Y.3
Zhou, J.4
-
45
-
-
84898060940
-
Computer simulations of fibronectin adsorption on hydroxyapatite surfaces
-
Liao, C. Y.; Xie, Y.; Zhou, J. Computer simulations of fibronectin adsorption on hydroxyapatite surfaces RSC Adv. 2014, 4, 15759-15769
-
(2014)
RSC Adv.
, vol.4
, pp. 15759-15769
-
-
Liao, C.Y.1
Xie, Y.2
Zhou, J.3
-
46
-
-
84901992391
-
Replica-Exchange Molecular Dynamics Simulation of Basic Fibroblast Growth Factor Adsorption on Hydroxyapatite
-
Liao, C.; Zhou, J. Replica-Exchange Molecular Dynamics Simulation of Basic Fibroblast Growth Factor Adsorption on Hydroxyapatite J. Phys. Chem. B 2014, 118, 5843-5852
-
(2014)
J. Phys. Chem. B
, vol.118
, pp. 5843-5852
-
-
Liao, C.1
Zhou, J.2
-
47
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte, J.; Doolittle, R. F. A simple method for displaying the hydropathic character of a protein J. Mol. Biol. 1982, 157, 105-132
-
(1982)
J. Mol. Biol.
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
48
-
-
33746067896
-
Behavior of Trichoderma reesei Hydrophobins in Solution: Interactions, Dynamics, and Multimer Formation
-
Szilvay, G. R.; Nakari-Setälä, T.; Linder, M. B. Behavior of Trichoderma reesei Hydrophobins in Solution: Interactions, Dynamics, and Multimer Formation Biochemistry 2006, 45, 8590-8598
-
(2006)
Biochemistry
, vol.45
, pp. 8590-8598
-
-
Szilvay, G.R.1
Nakari-Setälä, T.2
Linder, M.B.3
-
49
-
-
37749006898
-
Interactions of Hydrophobin Proteins in Solution Studied by Small-Angle X-Ray Scattering
-
Kisko, K.; Szilvay, G. R.; Vainio, U.; Linder, M. B.; Serimaa, R. Interactions of Hydrophobin Proteins in Solution Studied by Small-Angle X-Ray Scattering Biophys. J. 2008, 94, 198-206
-
(2008)
Biophys. J.
, vol.94
, pp. 198-206
-
-
Kisko, K.1
Szilvay, G.R.2
Vainio, U.3
Linder, M.B.4
Serimaa, R.5
-
50
-
-
34249659125
-
The relation between solution association and surface activity of the hydrophobin HFBI from Trichoderma reesei
-
Szilvay, G. R.; Kisko, K.; Serimaa, R.; Linder, M. B. The relation between solution association and surface activity of the hydrophobin HFBI from Trichoderma reesei FEBS Lett. 2007, 581, 2721-2726
-
(2007)
FEBS Lett.
, vol.581
, pp. 2721-2726
-
-
Szilvay, G.R.1
Kisko, K.2
Serimaa, R.3
Linder, M.B.4
-
51
-
-
0031473847
-
SWISS-MODEL and the Swiss-Pdb Viewer: An environment for comparative protein modeling
-
Guex, N.; Peitsch, M. C. SWISS-MODEL and the Swiss-Pdb Viewer: an environment for comparative protein modeling Electrophoresis 1997, 18, 2714-2723
-
(1997)
Electrophoresis
, vol.18
, pp. 2714-2723
-
-
Guex, N.1
Peitsch, M.C.2
-
52
-
-
46249092554
-
GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation
-
Hess, B.; Kutzner, C.; van der Spoel, D.; Lindahl, E. GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation J. Chem. Theory Comput. 2008, 4, 435-447
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 435-447
-
-
Hess, B.1
Kutzner, C.2
Van Der Spoel, D.3
Lindahl, E.4
-
53
-
-
0041784950
-
All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins
-
MacKerell, A. D.; Bashford, D.; Bellott; Dunbrack, R. L.; Evanseck, J. D.; Field, M. J.; Fischer, S.; Gao, J.; Guo, H.; Ha, S.; Joseph-McCarthy, D.; Kuchnir, L.; Kuczera, K.; Lau, F. T. K.; Mattos, C.; Michnick, S.; Ngo, T.; Nguyen, D. T.; Prodhom, B.; Reiher, W. E.; Roux, B.; Schlenkrich, M.; Smith, J. C.; Stote, R.; Straub, J.; Watanabe, M.; Wio rkiewicz-Kuczera, J.; Yin, D.; Karplus, M. All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins J. Phys. Chem. B 1998, 102, 3586-3616
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 3586-3616
-
-
Mackerell, A.D.1
Bashford, D.2
Bellott3
Dunbrack, R.L.4
Evanseck, J.D.5
Field, M.J.6
Fischer, S.7
Gao, J.8
Guo, H.9
Ha, S.10
Joseph-Mccarthy, D.11
Kuchnir, L.12
Kuczera, K.13
Lau, F.T.K.14
Mattos, C.15
Michnick, S.16
Ngo, T.17
Nguyen, D.T.18
Prodhom, B.19
Reiher, W.E.20
Roux, B.21
Schlenkrich, M.22
Smith, J.C.23
Stote, R.24
Straub, J.25
Watanabe, M.26
Wiorkiewicz-Kuczera, J.27
Yin, D.28
Karplus, M.29
more..
-
54
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen, W. L.; Chandrasekhar, J.; Madura, J. D.; Impey, R. W.; Klein, M. L. Comparison of simple potential functions for simulating liquid water J. Chem. Phys. 1983, 79, 926
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
55
-
-
0001538909
-
Canonical dynamics: Equilibrium phase-space distributions
-
Hoover, W. G. Canonical dynamics: equilibrium phase-space distributions Phys. Rev. A 1985, 31, 1695
-
(1985)
Phys. Rev. A
, vol.31
, pp. 1695
-
-
Hoover, W.G.1
-
56
-
-
0000388705
-
LINCS: A linear constraint solver for molecular simulations
-
Hess, B.; Bekker, H.; Berendsen, H. J. C.; Fraaije, J. G. E. M. LINCS: a linear constraint solver for molecular simulations J. Comput. Chem. 1997, 18, 1463-1472
-
(1997)
J. Comput. Chem.
, vol.18
, pp. 1463-1472
-
-
Hess, B.1
Bekker, H.2
Berendsen, H.J.C.3
Fraaije, J.G.E.M.4
-
57
-
-
0000202909
-
Ewald summation for systems with slab geometry
-
Yeh, I. C.; Berkowitz, M. L. Ewald summation for systems with slab geometry J. Chem. Phys. 1999, 111, 3155-3162
-
(1999)
J. Chem. Phys.
, vol.111
, pp. 3155-3162
-
-
Yeh, I.C.1
Berkowitz, M.L.2
-
58
-
-
0029878720
-
VMD: Visual molecular dynamics
-
Humphrey, W.; Dalke, A.; Schulten, K. VMD: visual molecular dynamics J. Mol. Graphics 1996, 14, 33-38
-
(1996)
J. Mol. Graphics
, vol.14
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
59
-
-
77952839756
-
Mechanisms of Protein Adhesion on Surface Films of Hydrophobin
-
Wang, Z. F.; Lienemann, M.; Qiao, M. Q.; Linder, M. B. Mechanisms of Protein Adhesion on Surface Films of Hydrophobin Langmuir 2010, 26, 8491-8496
-
(2010)
Langmuir
, vol.26
, pp. 8491-8496
-
-
Wang, Z.F.1
Lienemann, M.2
Qiao, M.Q.3
Linder, M.B.4
-
60
-
-
79960255479
-
Microscopic wetting of self-assembled monolayers with different surfaces: A combined molecular dynamics and quantum mechanics study
-
Xu, Z.; Song, K.; Yuan, S. L.; Liu, C. B. Microscopic wetting of self-assembled monolayers with different surfaces: A combined molecular dynamics and quantum mechanics study Langmuir 2011, 27, 8611-8620
-
(2011)
Langmuir
, vol.27
, pp. 8611-8620
-
-
Xu, Z.1
Song, K.2
Yuan, S.L.3
Liu, C.B.4
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