Development of liquid chromatography mass spectrometry method for analysis of organic N monomers in soil

Soil Biology and Biochemistry

Volumn 78, Issue , 2014, Pages 233-242

  Warren, Charles R ^a  

^a UNIVERSITY OF SYDNEY   (Australia)

Author keywords

CE MS; HILIC; LC MS; Microbial biomass; Organic N; Soil extract

Indexed keywords

CAPILLARY ELECTROPHORESIS; DYES; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; MONOMERS;

CE-MS; HILIC; LC-MS; MICROBIAL BIOMASS; ORGANIC N; SOIL EXTRACTS;

SOILS;

CAPILLARITY; CONCENTRATION (COMPOSITION); ELECTROKINESIS; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; ORGANIC NITROGEN; SOIL TYPE; BIOMASS; SOIL CHEMISTRY; SOIL MICROORGANISM; SOIL NITROGEN;

EID: 84907371649     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2014.08.008     Document Type: Article

References (61)

1. Alpert A.J., et al. Hydrophilic-interaction chromatography of complex carbohydrates. Journal of Chromatography A 1994, 676:191-202.
2. Annesley T.M. Ion suppression in mass spectrometry. Clinical Chemistry 2003, 49:1041-1044.
3. Antignac J.P., de Wasch K., Monteau F., De Brabander H., Andre F., Le Bizec B. The ion suppression phenomenon in liquid chromatography-mass spectrometry and its consequences in the field of residue. Analytica Chimica Acta 2005, 529:129-136.
4. Boudra H., Doreau M., Noziere P., Pujos-Guillot E., Morgavi D.P. Simultaneous analysis of the main markers of nitrogen status in dairy cow's urine using hydrophilic interaction chromatography and tandem mass spectrometry detection. Journal of Chromatography A 2012, 1256:169-176.
5. Brigham R.O. Assimilation of organic nitrogen by Zea mays and the influence of Bacillus subtilis on such assimilation. Soil Science 1917, 3:155-200.
6. Büscher J.M., Czernik D., Ewald J.C., Sauer U., Zamboni N. Cross-platform comparison of methods for quantitative metabolomics of primary metabolism. Analytical Chemistry 2009, 81:2135-2143.
7. Buszewski B., Noga S. Hydrophilic interaction liquid chromatography (HILIC) - a powerful separation technique. Analytical and Bioanalytical Chemistry 2012, 402:231-247.
8. Chapin F.S., Moilanen L., Kielland K. Preferential use of organic nitrogen for growth by a nonmycorrhizal arctic sedge. Nature 1993, 361:150-153.
9. Chen J., et al. Urinary hydrophilic and hydrophobic metabolic profiling based on liquid chromatography-mass spectrometry methods: differential metabolite discovery specific to ovarian cancer. Electrophoresis 2012, 33:3361-3369.
10. Creek D.J., Jankevics A., Breitling R., Watson D.G., Barrett M.P., Burgess K.E.V. Toward global metabolomics analysis with hydrophilic interaction liquid chromatography-mass spectrometry: improved metabolite identification by retention time prediction. Analytical Chemistry 2011, 83:8703-8710.
11. Farrell M., Hill P.W., Farrar J., Bardgett R.D., Jones D.L. Seasonal variation in soluble soil carbon and nitrogen across a grassland productivity gradient. Soil Biology & Biochemistry 2011, 43:835-844.
12. Fraser K., et al. Non-targeted analysis of tea by hydrophilic interaction liquid chromatography and high resolution mass spectrometry. Food Chemistry 2012, 134:1616-1623.
13. Fujihara S. Biogenic amines in rhizobia and legume root nodules. Microbes and Environments 2009, 24:1-13.
14. Fujihara S., Harada Y. Anovel polyamine, aminobutylhomospermidine, in Japanese volcanic ash soils. Soil Biology & Biochemistry 1989, 21:449-452.
15. Gika H.G., Theodoridis G.A., Vrhovsek U., Mattivi F. Quantitative profiling of polar primary metabolites using hydrophilic interaction ultrahigh performance liquid chromatography-tandem mass spectrometry. Journal of Chromatography A 2012, 1259:121-127.
16. Hakkinen M.R., et al. Analysis of underivatized polyamines by reversed phase liquid chromatography with electrospray tandem mass spectrometry. Journal of Pharmaceutical and Biomedical Analysis 2007, 45:625-634.
17. Hewavitharana A.K. Matrix matching in liquid chromatography-mass spectrometry with stable isotope labelled internal standards - is it necessary?. Journal of Chromatography A 2011, 1218:359-361.
18. Hewavitharana A.K., Tan S.K., Shaw P.N. Strategies for the detection and elimination of matrix effects in quantitative LC-MS analysis. LC GC North America 2014, 32:54-64.
19. Holcapek M., et al. Effects of ion-pairing reagents on the electrospray signal suppression of sulphonated dyes and intermediates. Journal of Mass Spectrometry 2004, 39:43-50.
20. Inagaki S., Tano Y., Yamakata Y., Higashi T., Min J.Z., Toyo'oka T. Highly sensitive and positively charged precolumn derivatization reagent for amines and amino acids in liquid chromatography/electrospray ionization tandem mass spectrometry. Rapid Communications in Mass Spectrometry 2010, 24:1358-1364.
21. Iwasaki Y., et al. Development and validation of a hydrophilic interaction chromatography-tandem mass spectrometry for quantification of nicotine and its metabolites in human maternal and cord sera. Biomedical Chromatography 2011, 25:503-510.
22. Jones D.L., Darrah P.R. Influx and efflux of amino-acids from Zea mays L roots and their implications for n-nutrition and the rhizosphere. Plant and Soil 1993, 156:87-90.
23. Kaspar H., et al. Urinary amino acid analysis: a comparison of iTRAQ (R)-LC-MS/MS, GC-MS, and amino acid analyzer. Journal of Chromatography B - Analytical Technologies in the Biomedical and Life Sciences 2009, 877:1838-1846.
24. Kato M., Kato H., Eyama S., Takatsu A. Application of amino acid analysis using hydrophilic interaction liquid chromatography coupled with isotope dilution mass spectrometry for peptide and protein quantification. Journal of Chromatography B-Analytical Technologies in the Biomedical and Life Sciences 2009, 877:3059-3064.
25. Kielland K. Landscape patterns of free amino acids in arctic tundra soils. Biogeochemistry 1995, 31:85-98.
26. Kuehnbaum N.L., Britz-McKibbin P. New advances in separation science for metabolomics: resolving chemical diversity in a Post-Genomic era. Chemical Reviews 2013, 113:2437-2468.
27. Larsen P.E., Sreedasyam A., Trivedi G., Podila G.K., Cseke L.J., Collart F.R. Using next generation transcriptome sequencing to predict an ectomycorrhizal metabolome. BMC Systems Biology 2011, 5:70.
28. Lee R., Ptolemy A.S., Niewczas L., Britz-McKibbin P. Integrative metabolomics for characterizing unknown low-abundance metabolites by capillary electrophoresis-mass spectrometry with computer simulations. Analytical Chemistry 2007, 79:403-415.
29. Lu W., Bennett B.D., Rabinowitz J.D. Analytical strategies for LC-MS-based targeted metabolomics. Journal of Chromatography B - Analytical Technologies in the Biomedical and Life Sciences 2008, 871:236-242.
30. Molliard M. Recherches sur l'utilisation par les plantes supérieures de diverses substances azotées. Bulletin de la Société Botanique de France 1910, 57:541-546.
31. Murphy J.P., Everley R.A., Coloff J.L., Gygi S.P. Combining amine metabolomics and quantitative proteomics of cancer cells using derivatization with isobaric tags. Analytical Chemistry 2014, 86:3585-3593.
32. Näsholm T., Kielland K., Ganeteg U. Uptake of organic nitrogen by plants. New Phytologist 2009, 182:31-48.
33. Oikawa A., Fujita N., Horie R., Saito K., Tawaraya K. Solid-phase extraction for metabolomic analysis of high-salinity samples by capillary electrophoresis-mass spectrometry. Journal of Separation Science 2011, 34:1063-1068.
34. Pesek J., Matyska M.T. Acomparison of two separation modes: HILIC and aqueous normal phase chromatography. LC GC North America 2007, 25:480-490.
35. Ramautar R., et al. Explorative analysis of urine by capillary electrophoresis-mass spectrometry in chronic patients with complex regional pain syndrome. Journal of Proteome Research 2009, 8:5559-5567.
36. Rappold B.A., Grant R.P. HILIC-MS/MS method development for targeted quantitation of metabolites: practical considerations from a clinical diagnostic perspective. Journal of Separation Science 2011, 34:3527-3537.
37. Remane D., Meyer M.R., Wissenbach D.K., Maurer H.H. Ion suppression and enhancement effects of co-eluting analytes in multi-analyte approaches: systematic investigation using ultra-high-performance liquid chromatography/mass spectrometry with atmospheric pressure chemical ionization or electrospray ionization. Rapid Communications in Mass Spectrometry 2010, 24:3103-3108.
38. Rutters H., Mohring T., Rullkotter J., Griep-Raming J., Metzger J.O. The persistent memory effect of triethylamine in the analysis of phospholipids by liquid chromatography/mass spectrometry. Rapid Communications in Mass Spectrometry 2000, 14:122-123.
39. Rychlik M., Asam S. Stable isotope dilution assays in mycotoxin analysis. Analytical and Bioanalytical Chemistry 2008, 390:617-628.
40. Sanchez-Lopez J., et al. Underivatized polyamine analysis in plant samples by ion pair LC coupled with electrospray tandem mass spectrometry. Plant Physiology and Biochemistry 2009, 47:592-598.
41. Schiesel S., Lammerhofer M., Lindner W. Multitarget quantitative metabolic profiling of hydrophilic metabolites in fermentation broths of beta-lactam antibiotics production by HILIC-ESI-MS/MS. Analytical and Bioanalytical Chemistry 2010, 396:1655-1679.
42. Schimel J., Balser T.C., Wallenstein M. Microbial stress-response physiology and its implications for ecosystem function. Ecology 2007, 88:1386-1394.
43. Setia R., Verma S.L., Marschner P. Measuring microbial biomass carbon by direct extraction - comparison with chloroform fumigation-extraction. European Journal of Soil Biology 2012, 53:103-106.
44. Sharples J.M., Cairney J.W.G. Organic nitrogen utilization by an unidentified mycobiont isolated from mycorrhizas of Pisonia grandis. Mycological Research 1997, 101:315-318.
45. Shen Y., Smith R.D. Proteomics based on high-efficiency capillary separations. Electrophoresis 2002, 23:3106-3124.
46. Simpson S.L., Quirino J.P., Terabe S. On-line sample preconcentration in capillary electrophoresis fundamentals and applications. Journal of Chromatography A 2008, 1184:504-541.
47. Soga T., Kakazu Y., Robert M., Tomita M., Nishioka T. Qualitative and quantitative analysis of amino acids by capillary electrophoresis-electrospray ionization-tandem mass spectrometry. Electrophoresis 2004, 25:1964-1972.
48. Sojo L.E., Lum G., Chee P. Internal standard signal suppression by co-eluting analyte in isotope dilution LC-ESI-MS. Analyst 2003, 128:51-54.
49. Sugimoto M., et al. Differential metabolomics software for capillary electrophoresis-mass spectrometry data analysis. Metabolomics 2010, 6:27-41.
50. Vogels G.D., Vanderdrift C. Degradation of purines and pyrimidines by microorganisms. Bacteriological Reviews 1976, 40:403-468.
51. Wang W.H., Kohler B., Cao F.Q., Liu L.H. Molecular and physiological aspects of urea transport in higher plants. Plant Science 2008, 175:467-477.
52. Warren C.R. Rapid and sensitive quantification of amino acids in soil extracts by capillary electrophoresis with laser-induced fluorescence. Soil Biology & Biochemistry 2008, 40:916-923.
53. Warren C.R. High diversity of small organic N observed in soil water. Soil Biology and Biochemistry 2013, 57:444-450.
54. Warren C.R. Quaternary ammonium compounds can be abundant in some soils and are taken up as intact molecules by plants. New Phytologist 2013, 198:476-485.
55. Warren C.R. Organic N molecules in the soil solution: what is known, what is unknown and the path forwards. Plant and Soil 2014, 375:1-19.
56. Warren C.R. Response of organic N monomers in a sub-alpine soil to a dry-wet cycle. Soil Biology and Biochemistry 2014, 77:233-242. (2 July 2014) (in press).
57. Warren C.R. Response of osmolytes in soil to drying and rewetting. Soil Biology and Biochemistry 2014, 70:22-32.
58. Witte C.P. Urea metabolism in plants. Plant Science 2011, 180:431-438.
59. Young E.G., Conway C.F. On the estimation of allantoin by the Rimini-Schryver reaction. Journal of Biological Chemistry 1942, 142:839-853.
60. Yu Z., Zhang Q., Kraus T.E.C., Dahlgren R.A., Anastasio C., Zasoski R.J. Contribution of amino compounds to dissolved organic nitrogen in forest soils. Biogeochemistry 2002, 61:173-198.
61. Zhang T., Creek D.J., Barrett M.P., Blackburn G., Watson D.G. Evaluation of coupling reversed phase, aqueous normal phase, and hydrophilic interaction liquid chromatography with orbitrap mass spectrometry for metabolomic studies of human urine. Analytical Chemistry 2012, 84:1994-2001.