Combining amine metabolomics and quantitative proteomics of cancer cells using derivatization with isobaric tags

Analytical Chemistry

Volumn 86, Issue 7, 2014, Pages 3585-3593

  Murphy, J Patrick ^a   Everley, Robert A ^a   Coloff, Jonathan L ^a   Gygi, Steven P ^a  

^a HARVARD MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; BIOMOLECULES; METABOLISM; MULTIPLEXING; PEPTIDES;

AMINO ACID ANALYSIS; METABOLIC LABELING; METABOLIC REGULATIONS; METABOLITE ANALYSIS; PROTEOMICS TECHNOLOGY; QUANTITATIVE MEASUREMENT; QUANTITATIVE PROTEOMICS; SENSITIVE MEASUREMENT;

METABOLITES;

AMINE;

HUMAN; METABOLISM; METABOLOMICS; NEOPLASM; PATHOLOGY; PROTEOMICS;

AMINES; HUMANS; METABOLOMICS; NEOPLASMS; PROTEOMICS;

EID: 84897500817     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac500153a     Document Type: Article

References (23)

1. Patti, G. J.; Yanes, O.; Siuzdak, G. Nat. Rev. Mol. Cell Biol. 2012, 13, 263-269
2. Blau, N.; van Spronsen, F. J.; Levy, H. L. Lancet 2010, 376, 1417-1427
3. Simon, E.; Flaschker, N.; Schadewaldt, P.; Langenbeck, U.; Wendel, U. J. Inherited Metab. Dis. 2006, 29, 716-724
4. Locasale, J. W. Nat. Rev. Cancer 2013, 13, 572-583
5. Kaspar, H.; Dettmer, K.; Gronwald, W.; Oefner, P. J. Anal. Bioanal. Chem. 2009, 393, 445-452
6. Kaspar, H.; Dettmer, K.; Chan, Q.; Daniels, S.; Nimkar, S.; Daviglus, M. L.; Stamler, J.; Elliott, P.; Oefner, P. J. J. Chromatogr., B 2009, 877, 1838-1846
7. Boughton, B. A.; Callahan, D. L.; Silva, C.; Bowne, J.; Nahid, A.; Rupasinghe, T.; Tull, D. L.; McConville, M. J.; Bacic, A.; Roessner, U. Anal. Chem. 2011, 83, 7523-7530
8. Yuan, W.; Zhang, J.; Li, S.; Edwards, J. L. J. Proteome Res. 2011, 10, 5242-5250
9. Yuan, W.; Anderson, K. W.; Li, S.; Edwards, J. L. Anal. Chem. 2012, 84, 2892-2899
10. Thompson, A.; Schafer, J.; Kuhn, K.; Kienle, S.; Schwarz, J.; Schmidt, G.; Neumann, T.; Hamon, C. Anal. Chem. 2003, 75, 1895-1904
11. Ross, P. L.; Huang, Y. N.; Marchese, J. N.; Williamson, B.; Parker, K.; Hattan, S.; Khainovski, N.; Pillai, S.; Dey, S.; Daniels, S. Mol. Cell. Proteomics 2004, 3, 1154-1169
12. Rappsilber, J.; Ishihama, Y.; Mann, M. Anal. Chem. 2003, 75, 663-670
13. Haas, W.; Faherty, B. K.; Gerber, S. A.; Elias, J. E.; Beausoleil, S. A.; Bakalarski, C. E.; Li, X.; Villen, J.; Gygi, S. P. Mol. Cell. Proteomics 2006, 5, 1326-1337
14. Melamud, E.; Vastag, L.; Rabinowitz, J. D. Anal. Chem. 2010, 82, 9818-9826
15. Lu, W.; Clasquin, M. F.; Melamud, E.; Amador-Noguez, D.; Caudy, A. A.; Rabinowitz, J. D. Anal. Chem. 2010, 82, 3212-3221
16. McAlister, G. C.; Huttlin, E. L.; Haas, W.; Ting, L.; Jedrychowski, M. P.; Rogers, J. C.; Kuhn, K.; Pike, I.; Grothe, R. A.; Blethrow, J. D. Anal. Chem. 2012, 84, 7469-7478
17. Elias, J. E.; Gygi, S. P. Nat. Methods 2007, 4, 207-214
18. Jain, M.; Nilsson, R.; Sharma, S.; Madhusudhan, N.; Kitami, T.; Souza, A. L.; Kafri, R.; Kirschner, M. W.; Clish, C. B.; Mootha, V. K. Science 2012, 336, 1040-1044
19. DeBerardinis, R. J.; Mancuso, A.; Daikhin, E.; Nissim, I.; Yudkoff, M.; Wehrli, S.; Thompson, C. B. Proc. Natl. Acad. Sci. 2007, 104, 19345-19350
20. Zheng, J.; Dixon, R. A.; Li, L. Anal. Chem. 2012, 84, 10802-10811
21. Huang, D. W.; Sherman, B. T.; Lempicki, R. A. Nat. Protoc. 2008, 4, 44-57
22. Possemato, R.; Marks, K. M.; Shaul, Y. D.; Pacold, M. E.; Kim, D.; Birsoy, K.; Sethumadhavan, S.; Woo, H. K.; Jang, H. G.; Jha, A. K. Nature 2011, 476, 346-350
23. Locasale, J. W.; Grassian, A. R.; Melman, T.; Lyssiotis, C. A.; Mattaini, K. R.; Bass, A. J.; Heffron, G.; Metallo, C. M.; Muranen, T.; Sharfi, H. Nat. Genet. 2011, 43, 869-874